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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoFB_comp10305_c0_seq3
Scaffold_idBomo_Chr1
NCBI non-redundant
(nr)		PREDICTED:_CCR4-NOT_transcription_complex_subunit_1_isoform_X3_[Bombyx_mori]
Ontology
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000288 P nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000932 C P-body
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006417 P regulation of translation
GO:0010606 P positive regulation of cytoplasmic mRNA processing body assembly
GO:0017148 P negative regulation of translation
GO:0030014 C CCR4-NOT complex
GO:0030015 C CCR4-NOT core complex
GO:0030331 F estrogen receptor binding
GO:0031047 P gene silencing by RNA
GO:0032947 F molecular adaptor activity
GO:0033147 P negative regulation of intracellular estrogen receptor signaling pathway
GO:0042974 F retinoic acid receptor binding
GO:0048387 P negative regulation of retinoic acid receptor signaling pathway
GO:0048589 P developmental growth
GO:0060213 P positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
GO:1900153 P positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
Transcript
Level		FPKM:1.67 TPM:1.83
ORF EntryO_BomoFB12977_complete:A_BomoFB_comp10305_c0_seq3
Sequence
(Nucleotide)
AAAATTTTTTTTTTTTTTTTTAAATATTAAACCACTTTTTATTTCCTTCAATTTTATAAA
GATAACATACAAATATTAAATTACTATTTTCAATTAACAAAAATTAAACACAATTAATAA
TAAATAAAAAAATACATAATAATTCAAATATTTTCATTGCCAATTTCAAATAACTCACAA
TTTAGTAATAATCATTGAAAGATTTATTTTTTATTTTTATACATGCATCAATTAATTTAT
TTATATATATATTATATATAAACCATTTGTGACCGTTGTTTAAGGATTAAGATATAAACA
CTTACACTACACATTTCACTATCACAGTGTCTTTAGAGAAAACGTTCACTTGTTTCAAAA
GTCATTTACTTCTTGAACAGCTTGTTCCACTGCATTGGGCCTTTGGGGGGTTGGGTAGAG
GTGGACGGCTGCGGCTGAGGCGCCTGGCTCGTGCTAGCCTCAGATTGGAAGCCTTTCTCA
GCATAGCTTTTGTACCCTTGCTTATGCCGGAGAGACTCCCAATTGGCGCGGCGCTACTCG
GCCGCTTCCCTCTCCCCCCCTCCCCCACCCGTTGTGTCGGCGATGCACGATCGCGCCACC
GAAGCGAACAGCTTCTCTATCTCCGGAGCGCAGTGTACAAATTCGTGGGACCAGAATTTG
TAGATGGGATTCTTGATTAGTTCGATGAAAGTGATGAGCAGACCCCAAGGGTGCGGACGG
TTGACGATCAGCCGTTCCAGGAGCATCCTGGTGATCTGTTCTTGTACTGCTTCCGAATTG
GCCTCCGCGAACAAGTAGAGGAGACAGCAAGAGAAGTAGTGCGTGTGACTGTTCGGGTAA
CGCAGCTGATTGGCTATCGCGTTCAAGAACAGGTACCGGCCTTCAAAATCGAAATCCACG
GTAAAGTTCTGGAAGATATCCATGTGAGCTGAATGTGCAATCGTCGACATATTCGGAGTT
TGCCCTTTAGCACGAATATAGGCAATGGCCTGTGTGCCGACGTACAAGACAACCGCGTTC
ATCAGCTGACTGTTGTATCGCTTGCCAGGCTCGTTCGCAACCTGCATATTTCCCCTTAAT
TCAGACAGGAAGGTAACTGGAGCTCTCGCTTTGAGGTACGCGTCCAAATCCTTCTTGAAC
TGTGACGCAGAGATGATCGTAGAATAGTTGATGACCGCACGAGGCGGTAGAGCAATTTCC
GGGAGCAAGTCAACTTTCAGATTCGGCGTGAACGGATCGGGAAGCCTCATGTTCCGCGGG
AAAGCGGACAGTATTAAATTGCGCATTTGAATGCAGTTCGGGGGGATTTCGTCACAGAAA
CCATAGTGGTAATCGCACAGGAACTCCGGGAAATCATGGAGTAAGACCAACAACACCTTG
AGGGTTCCTTTGTATAGCGTCATGACCGGAGGAGCAAGCTCAGTGTTACGCAGGAATGGA
TCAAGGAATTTGAACAGCTCAATGAGTAAGGTCGAGTACATTCCCCAGCCCTTTTGTTGT
GGAGTAACAGCTAGGACGCGGTTTATGAAGGCACGGTGGGCCACAATCTCGAGCCACGCG
TAACAGAATCCGGGAGCGACACTTGGTTTGATAATGCGAAGGGTGTGGCAGAACGCAGTC
AGAACCTGATAGTTCATAGATTCTAGAACAGGCTCAGCCATGTTCATGTCGAGGAACAGA
ATCAGGAGTAGGCGGTGGTACGGTAGCTGCTGGAAGTTGGTGCCCTGGTCATCGTGGTCC
TGGAGTAGCCAGCCAACTATAATGCCTAGAATCTTGTTCAGAAGGTTTAATTTCGGAGTG
GGATTTCCGCTATCGGCTGTATTCTTGATCAAAAGCGAGACAAGTTTGATAAAAGAGTCG
CACATGGTGTAGAATTTCTCACGTTTCTGAGGCACTGGAGGTGGATTAACCCTGTCCTCG
TTCAGAAGTTGGTATACATTCTCGATGCACATCTGCGAGGCCATTCTGAAGAATCTAGCG
ATCATGTCATCAGATTTGAGAATGCCGTTCATGTTCATTCGGTGGACATACAAGTTGAAG
TTCTGCGCCAGTTCGATCTCTGTCAGAGGACTGAGGAGAACATTCCTCCATTCACGGAGT
AAATTCTCAGTCTTCTCTTGAAGTCCGGGTGGGTCGTCATAGTTTTGTGCTCGAACTTGC
AGTATTCCAGAATGTATGTGGGCCGTCGGTCCGAGCGGTGACCTTTCGCCCAAATATGCA
CTAGGGTCCTGATTCACCCTCAAAATCTCGATCAGGGAGCCCAGACCCTCGGGCGGAGGC
GTCCTTGAGTGGGACATGACCCTCACTAACATTTCGGTCGTGTGGTACAAGTCAGATTCG
TTAACGTACATGTTATTTCTGTCATCGACAAGATACAGCTGTACTAGTTGCATAGCGAAT
GCTACCGCCACGTAGTTATTGCCATTGTCCATCATATGAGCAAGGGCGATATCATACTGT
GGTAGATTAACCAAATGGTTTCTGATAAGGCAGTCAACAGCCTCGATATTGTATCGGAGT
TCCTCCCTGCATTCAATCAAGCAGCAGGTGATCTGCTTGGAAGTCCAAACGTGTCCATAG
ACTCTGGCGTCTTCGAGTAGTTTCAGGACACGAAGGTGGATGTCGCGGTAGCGGGCCATC
ATTTCGATGTGTTCGTTGCTCGCACCGGGTGGGACTAAATGTCCATCAAGCAAACCATCT
ACAGCCTTCTGCAGTAGAGTACAGCCAGACACAATATCGCGACTCCGTCTCGCCATAAAC
AAGCACTCGAGCAGCGTATGCATGTTCGCTGCCTGGACAGCCAAGGAAGCCACACCTAAG
GAATTGGCAAGGAATAGTTCCGCAGTGTTTATCAGAGCGCCCATCTCGTCAGCGCCGTAC
ACTTGAGCTGGATTCATGAACAGCTGTGGAATCTGCTCTTGAGACGGCTTCGGGATGAAC
ATGCCCGCATCTCTGACGGGGACAAATCCCGGAATGTTGCATGCGAACTCTTCGTATACT
GATATCTGCATGTCTGTCGGACCTCCGACGCGCAGGCGGACTCTTTCCGGGATCCTTTCA
GTCTGGTAAGTCACGACGATGGTGTCATAATAGCGGCGGCCTTCTTGACGGGCCAGTTTT
CGCATTTCGTAATCGCTAATCAAGCGTTTGTCTAATTCAGGTAGAGCCTTCTCAACGGCT
GTCTTCTGAATGAAAGCGCAGGCCAGTTCCATGTTTTCAGTAGCAAGGACAGCAGCTGCA
CTCTCGATGATTTCTTTTTGTTGTTGTGTTGATGGCATGAGAGCAGTGATGAAAGCTGCC
TTCAGATTAGTGCTGATGGTGGTGATGATCTGCTCTCGGCATGTGATCATTGCCATGCCG
GCAGTCAAGTTGCGCATCATGTGATGAGCGCAGGTACGCATTCGAACTTCGTCAGGGTCC
AATGCGAAATCCTTCCGTATGATCTGTTCACAAGTTGTCAAAGCATACTTGATAGACCTA
TCAACGACTGGGTGAATCCATTCTTGGATCGATCTCTCGATCGCGGGCTTTACAAACTGT
TTAAGATGCGGGTAGTTTTGGAATAAGATTATGTGAGGGTTGAAACAAATCTTTTGTCCG
AACGCAGACGTGGAGGATACGTTCACATCCAAATAGTTGAACCTGGGTTCTGGCATACCG
AGCACGCCCATCAGACCAGGATCGGCGGGCACTAAGCCAGTTGGTGGAGGAGGGACAGGT
CCTGCCATTTCTTCAGCAGGAATCATCGGAGGCTGAGGCGGCATTATTGGTATCTGCGGC
GGTGGTACTTGAATTGGCGGGTTGACCGGCATTGTATTTGCGGCTTCTTTGTTTGGCTTC
GGCTGTGATAGTTGGAACTCAATCTGCCTCAATTTTTCAGGGTCTTTCAAGTAAAGGGAA
GGCTTCAAATCCATTATGTCCAGGCCTAAGTTTTTACACAATACTTCGATTTCAAATTTT
AGGTTCAATTTCAAGTCGGGTTCTTGATGTAGTTCTGCTAGAACGTTCATAAGGGCCATC
GTCCACGGGTTCGGAGGTTTAAATACTACACTTTTCGCGCAAGATTCTAAAACTTTCGCA
ACGAAAGGAACCACATAAAGCAGTTCTTGCTGGCCTTTATGATAGGCTTCGAGGACCAAC
GCCTTTAAATCCAAGTCGAGGAGGAGAATCGGCTGGTTTCTTGCAAGTGTTAGCATGCCG
AGCCAGTGACCAAGATTCTTGAGAAGCGATCGATCCGAGAAATTAGCGATTCCTTTATCT
GAACGCAATAACACACGGATATTGCGATAAGTTTCCTTTGTGACTAATTTATTTACTTCG
CGGACTTTAAGAACATCAAGGAAATTAGAATACAAAGCATGGAAATTGAGTTCAATAGAG
GCTCTCTTCATAACAAGGTACTGAGAAAGCCAGGGATAGTATTCATCGGTAAGTACTTCC
TTAAGTTCTTCACATTTGGTTTGCAAATTAAGTTGACTAAGATTGTTAAAAATGAAAGCA
GTTTTATCTTGTATGGGTTCTGGTGGGGCATTAATTTTTTCTTCCCTGTCAGTAGCAGTC
AAAAGAGTGTCGATATTTGTAGCGTTCGCGATAGATGGCCTACTACCCATGCTTCCAGCA
GGGCACGCGGCCATTTTCGACATCACCGAAATAGATGGAGGAGCACAAACTACTGGCCTA
TAAGGCGCCGAGACAGTTACAACGGCACTCTGATTAAGAATAGCAGCCAACGTAGCAGGA
AGTACCGGCCCCTGGGGTTTATTGGGAGGTTCTTGGCTTTGTAAGCCATATTCGACATAT
TCGATCAAATGGGGAGGGAATTCACTAAAATGCGGAATAGCGCGAACGTGCTCACAATAT
TTGTGATAATCTTTAAGACGAGATTTAAAACGATCTAAAGCCGCAATTCCGAAATAATAC
ATTTTCGATCCCTCGGCCTTTCGTAAAGCATCAAGAACGAAACGCAACGCTAACCCTAAA
GACACGTAGCTTGGGACTAATCCTCTTTCGATGATACCGCCAAACAGTTGAGCAGTAATT
TGTAACTCTTTGTCGGGGTATTGGGGGAAAAACTTATACTCTTCAAAAAGATTACGCAAC
ATGCATGAGAATACTTCCCGTTCCCTCTTGTTAGGGGAATCCTGAAATTTTTTGAGCATA
TCTAGTACTTCGTCTATTGATAAAGTCGGATGTGGAGGATGATTGTATATCCTTTGGAAG
TAACTGTTTGCTTCGTCCTCGATTTCCTTAGCAACGGTGTGCATCACTTCCGGGAAGGGA
ATGGGATCCTGCAGACGAGGTTTATCAATCGCGGGAGCGGGAGCCATTCTCGCGAGCGCT
CCGAGGTTTGCGTTGGGCGGTAACGGCATCATGGCAAACGGACTGTTAGGTCCGCCTCCA
AGTAGCCTAACAGGAGAGCCCGGAGTGGTTACGAGTGGTCCGAGTGTACCGGGCATAGCA
AATGCAGTATTCGCGGGGGCACCTAAAGTCATATTTGCCATGCCCGGTGCCAAATTACCG
ATAGCGTCAACGTGGGGTGTAAACAATTGCCCTCCTAGGCCAGCTGGATTGAATTGAGTT
TCCATGACCCTTGTATGAGGTCTTGCTATTCCCGCAATGTTTTGTCGTGTTTTGCTGAGT
ATTAACGTCTGACAGCTTCCTATTACGTTGTAAATAGCCTCCTGTAATTCTTGAGAAACA
TTTGGAATGCATAGTTGTAAGCAAGCCAACATTGTTGTAATCGTTTCGGGTGGCAGCTGC
GCAGCCTTAGGCAATTGTTCTTCGGGTGCCTTGCCGAGCACCTGTGGACATCGCCTTTGT
AAAAATTTCACCATAGCCGACACAAACGTCTCACCGTGATCTCTGATTTTGTCGGTCAAC
CATTTATCTAATTTGAGATACTCCCTCCTAGACGCCAAACAAGCCAAATCAATAACAAAC
GGGAACGATTGTACATTCAATAAGAGCGACAGCGCCTTTAAATCCTGTGCGACGTCCAAA
ATTCTAGATAATTTGGATTGGTCACTCTCACCGCGTATGTACCAATCTGCCATTGAGTGC
ATGATGATAGGTTTTATGTTAGGGTTCTGTGTATGCCAGGCGTGGTGGAGAATTATGCCT
GAATTTGGATGATTACCTAGAAATATTGGAATCAGTGTCGTCAATAACTCTTGCCTAAAG
ACAGTAATCGGTGGACTGATTTGCAGTAAAACTAAGAGCAAAATATCGGGACAATGTTGA
AGTGGCATTTTAAAGAGTTCATGGACTTGCATGTAATAACCACGCTCTGCAGCATACAGC
AGTAACTCCACTAAGTAGAGGCAACGCCAAGTGCCCACTTCTTTGTTGTCGGTCTCAGGA
GGAGATTTCAAAATGTCTATTGATACTGGATGAAAAGGATGATCGGCAAAACAGAATACG
TCAGAATGTTTGAGAATGTGGCTGATCAAACTCATCTGTCCTTCCAAATTCGTCCACCGT
CGGCATAAATACTCAACGGGGAATATATTGGCCGGATAGCCGGCGCTCTGTAGACCAAGT
CTCAGTATGGTGAATAGTAGGGATAGTCCTGTTCGGTCTGGTACAAAGAATTCTGGGTGA
TCCAGCTGTAGTATCACTTCCTTCCAGTTCAGATTAGATGCTAATTCTTTTAATGTCTGA
ACAAATACTTCAGCATTCCATTCACTGTGTGGATGTGCAGCTGGTTCTTTTTTAGCTTCA
TGACTCATCCAAAAGTTGCCTGGTGTCTGTATTTGCGGACCGTCTTGTTGGTTACTGTGA
TAGCGAACCATCACAGCTATGATTCTAGCCACGTCTATTGCGGTTGGTTCTCTCGCACCA
AAGTTTATCATATTGTTCTTGCAATCCTCAACTGAAGTTGTAAAAGCATGGCCCATATCT
CGGATAATATCTGGCAGGGAATTCTCCATCATGGCAGCAGCCATATCATCGGCTGAAGTC
ATTTCCTCGAGAGGTGTCTGAGTGTCGTCCGGATAAATCAACGGTGCGAGTACTATCGGG
ACTACTTCACGAGGGAAGTCTGATCTCAGTCTCTTCAAAAACAAATCCTTCGTAACTGCC
GCTAATTTGATATTGTCGAGCGCGAGACTCGTGAGGAGTGACTGCAACACTTCAGGGCTG
CATTCCTGAAGTCCTGCACGCTCCGCCTGATGTCCCCGTTCTGCGTCGAGATAGCACTGT
ATTAAATCCAAGAATCTTTTCTTCAAGTGCTGCTTTGCAACTGCAACTATCTCACTCTTT
GTTGAATACCTTCTCAGAGCCAATGAAAAGGCAACATCCTCTGCTGTAGTTAACTTCAAC
AGTCTAGATAGTCGATTCAATAGTGCATTTGTAGGCTTTAATAGCTTTGTTACAGAGCGT
GTTGGATGATCAACAGCCCGGCAAACAACTGTTGATTTAGCTGGATGATTGAGCAAGCCT
GCCAACTGTTGTCCAAGAAGGGAGGCGTGGATGCTATTAGTAGCTGCAGAAGTTGTACGG
TCTCCGTCCCAAGCTATCCTTGCCGCTTCAGTGAGAAGACATCTTAAAACTTGATTCTCT
GCTTCCAAGCCATAGACACTGACAATCTGATTCAATTCTTGACTCGTCTGCTTGAAATTT
TTCTTGTTTAAATTTACGACGAGATAATGTATATGCGATAAGCTCAACGTTAAAGAGTCC
AGGTTCATAGTTCCATTAATGCAAAAACGAAAGCTTCAAACACGTTTGAAGCTTTCTCGA
TTTTTTATGATTTTCTACGACGAACTTGTGTTCTTTGGTAGTTTTCTGACGAAATGATAA
TAAACCTAAGCCCAACATCACCAATTTTATTGTTCACTTTGATAAAAACAACATAATTAT
TATCACCCCACTCAGCAATTTATAAATTAAATTTCAGTAGTAATCAGCACACGATGACGA
AAGAACCAAAGTGGCTGCCTGCTGCTTCGTGCCATGTTCGGAAAATTTTCGTGAACGTCC
GCAGCCCAGAGAGTTACCATAGATCGGAAGAGCGT
(8015 bp)

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