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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoFB_comp10305_c0_seq2
Scaffold_idBomo_Chr1
NCBI non-redundant
(nr)		PREDICTED:_CCR4-NOT_transcription_complex_subunit_1_isoform_X2_[Bombyx_mori]
Ontology
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000288 P nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000932 C P-body
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006417 P regulation of translation
GO:0010606 P positive regulation of cytoplasmic mRNA processing body assembly
GO:0017148 P negative regulation of translation
GO:0030014 C CCR4-NOT complex
GO:0030015 C CCR4-NOT core complex
GO:0030331 F estrogen receptor binding
GO:0031047 P gene silencing by RNA
GO:0032947 F molecular adaptor activity
GO:0033147 P negative regulation of intracellular estrogen receptor signaling pathway
GO:0042974 F retinoic acid receptor binding
GO:0048387 P negative regulation of retinoic acid receptor signaling pathway
GO:0048589 P developmental growth
GO:0060213 P positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
GO:1900153 P positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
Transcript
Level		FPKM:8.22 TPM:9.01
ORF EntryO_BomoFB12975_complete:A_BomoFB_comp10305_c0_seq2
Sequence
(Nucleotide)
CTTCCATCTTTTCTCTTGCCACTTCTCTCCTCTAAACTTAACCCAACTTAAACCTAGCTT
AGCATTAGACTTTACCTTTCTCAGCATAGCTTTTGTACCCTTGCTTATGCCGGAGAGACT
CCCAATTGGCGCGGCGCTACTCGGCCGCTTCCCTCTCCCCCCCTCCCCCACCCGTTGTGT
CGGCGATGCACGATCGCGCCACCGAAGCGAACAGCTTCTCTATCTCCGGAGCGCAGTGTA
CAAATTCGTGGGACCAGAATTTGTAGATGGGATTCTTGATTAGTTCGATGAAAGTGATGA
GCAGACCCCAAGGGTGCGGACGGTTGACGATCAGCCGTTCCAGGAGCATCCTGGTGATCT
GTTCTTGTACTGCTTCCGAATTGGCCTCCGCGAACAAGTAGAGGAGACAGCAAGAGAAGT
AGTGCGTGTGACTGTTCGGGTAACGCAGCTGATTGGCTATCGCGTTCAAGAACAGGTACC
GGCCTTCAAAATCGAAATCCACGGTAAAGTTCTGGAAGATATCCATGTGAGCTGAATGTG
CAATCGTCGACATATTCGGAGTTTGCCCTTTAGCACGAATATAGGCAATGGCCTGTGTGC
CGACGTACAAGACAACCGCGTTCATCAGCTGACTGTTGTATCGCTTGCCAGGCTCGTTCG
CAACCTGCATATTTCCCCTTAATTCAGACAGGAAGGTAACTGGAGCTCTCGCTTTGAGGT
ACGCGTCCAAATCCTTCTTGAACTGTGACGCAGAGATGATCGTAGAATAGTTGATGACCG
CACGAGGCGGTAGAGCAATTTCCGGGAGCAAGTCAACTTTCAGATTCGGCGTGAACGGAT
CGGGAAGCCTCATGTTCCGCGGGAAAGCGGACAGTATTAAATTGCGCATTTGAATGCAGT
TCGGGGGGATTTCGTCACAGAAACCATAGTGGTAATCGCACAGGAACTCCGGGAAATCAT
GGAGTAAGACCAACAACACCTTGAGGGTTCCTTTGTATAGCGTCATGACCGGAGGAGCAA
GCTCAGTGTTACGCAGGAATGGATCAAGGAATTTGAACAGCTCAATGAGTAAGGTCGAGT
ACATTCCCCAGCCCTTTTGTTGTGGAGTAACAGCTAGGACGCGGTTTATGAAGGCACGGT
GGGCCACAATCTCGAGCCACGCGTAACAGAATCCGGGAGCGACACTTGGTTTGATAATGC
GAAGGGTGTGGCAGAACGCAGTCAGAACCTGATAGTTCATAGATTCTAGAACAGGCTCAG
CCATGTTCATGTCGAGGAACAGAATCAGGAGTAGGCGGTGGTACGGTAGCTGCTGGAAGT
TGGTGCCCTGGTCATCGTGGTCCTGGAGTAGCCAGCCAACTATAATGCCTAGAATCTTGT
TCAGAAGGTTTAATTTCGGAGTGGGATTTCCGCTATCGGCTGTATTCTTGATCAAAAGCG
AGACAAGTTTGATAAAAGAGTCGCACATGGTGTAGAATTTCTCACGTTTCTGAGGCACTG
GAGGTGGATTAACCCTGTCCTCGTTCAGAAGTTGGTATACATTCTCGATGCACATCTGCG
AGGCCATTCTGAAGAATCTAGCGATCATGTCATCAGATTTGAGAATGCCGTTCATGTTCA
TTCGGTGGACATACAAGTTGAAGTTCTGCGCCAGTTCGATCTCTGTCAGAGGACTGAGGA
GAACATTCCTCCATTCACGGAGTAAATTCTCAGTCTTCTCTTGAAGTCCGGGTGGGTCGT
CATAGTTTTGTGCTCGAACTTGCAGTATTCCAGAATGTATGTGGGCCGTCGGTCCGAGCG
GTGACCTTTCGCCCAAATATGCACTAGGGTCCTGATTCACCCTCAAAATCTCGATCAGGG
AGCCCAGACCCTCGGGCGGAGGCGTCCTTGAGTGGGACATGACCCTCACTAACATTTCGG
TCGTGTGGTACAAGTCAGATTCGTTAACGTACATGTTATTTCTGTCATCGACAAGATACA
GCTGTACTAGTTGCATAGCGAATGCTACCGCCACGTAGTTATTGCCATTGTCCATCATAT
GAGCAAGGGCGATATCATACTGTGGTAGATTAACCAAATGGTTTCTGATAAGGCAGTCAA
CAGCCTCGATATTGTATCGGAGTTCCTCCCTGCATTCAATCAAGCAGCAGGTGATCTGCT
TGGAAGTCCAAACGTGTCCATAGACTCTGGCGTCTTCGAGTAGTTTCAGGACACGAAGGT
GGATGTCGCGGTAGCGGGCCATCATTTCGATGTGTTCGTTGCTCGCACCGGGTGGGACTA
AATGTCCATCAAGCAAACCATCTACAGCCTTCTGCAGTAGAGTACAGCCAGACACAATAT
CGCGACTCCGTCTCGCCATAAACAAGCACTCGAGCAGCGTATGCATGTTCGCTGCCTGGA
CAGCCAAGGAAGCCACACCTAAGGAATTGGCAAGGAATAGTTCCGCAGTGTTTATCAGAG
CGCCCATCTCGTCAGCGCCGTACACTTGAGCTGGATTCATGAACAGCTGTGGAATCTGCT
CTTGAGACGGCTTCGGGATGAACATGCCCGCATCTCTGACGGGGACAAATCCCGGAATGT
TGCATGCGAACTCTTCGTATACTGATATCTGCATGTCTGTCGGACCTCCGACGCGCAGGC
GGACTCTTTCCGGGATCCTTTCAGTCTGGTAAGTCACGACGATGGTGTCATAATAGCGGC
GGCCTTCTTGACGGGCCAGTTTTCGCATTTCGTAATCGCTAATCAAGCGTTTGTCTAATT
CAGGTAGAGCCTTCTCAACGGCTGTCTTCTGAATGAAAGCGCAGGCCAGTTCCATGTTTT
CAGTAGCAAGGACAGCAGCTGCACTCTCGATGATTTCTTTTTGTTGTTGTGTTGATGGCA
TGAGAGCAGTGATGAAAGCTGCCTTCAGATTAGTGCTGATGGTGGTGATGATCTGCTCTC
GGCATGTGATCATTGCCATGCCGGCAGTCAAGTTGCGCATCATGTGATGAGCGCAGGTAC
GCATTCGAACTTCGTCAGGGTCCAATGCGAAATCCTTCCGTATGATCTGTTCACAAGTTG
TCAAAGCATACTTGATAGACCTATCAACGACTGGGTGAATCCATTCTTGGATCGATCTCT
CGATCGCGGGCTTTACAAACTGTTTAAGATGCGGGTAGTTTTGGAATAAGATTATGTGAG
GGTTGAAACAAATCTTTTGTCCGAACGCAGACGTGGAGGATACGTTCACATCCAAATAGT
TGAACCTGGGTTCTGGCATACCGAGCACGCCCATCAGACCAGGATCGGCGGGCACTAAGC
CAGTTGGTGGAGGAGGGACAGGTCCTGCCATTTCTTCAGCAGGAATCATCGGAGGCTGAG
GCGGCATTATTGGTATCTGCGGCGGTGGTACTTGAATTGGCGGGTTGACCGGCATTGTAT
TTGCGGCTTCTTTGTTTGGCTTCGGCTGTGATAGTTGGAACTCAATCTGCCTCAATTTTT
CAGGGTCTTTCAAGTAAAGGGAAGGCTTCAAATCCATTATGTCCAGGCCTAAGTTTTTAC
ACAATACTTCGATTTCAAATTTTAGGTTCAATTTCAAGTCGGGTTCTTGATGTAGTTCTG
CTAGAACGTTCATAAGGGCCATCGTCCACGGGTTCGGAGGTTTAAATACTACACTTTTCG
CGCAAGATTCTAAAACTTTCGCAACGAAAGGAACCACATAAAGCAGTTCTTGCTGGCCTT
TATGATAGGCTTCGAGGACCAACGCCTTTAAATCCAAGTCGAGGAGGAGAATCGGCTGGT
TTCTTGCAAGTGTTAGCATGCCGAGCCAGTGACCAAGATTCTTGAGAAGCGATCGATCCG
AGAAATTAGCGATTCCTTTATCTGAACGCAATAACACACGGATATTGCGATAAGTTTCCT
TTGTGACTAATTTATTTACTTCGCGGACTTTAAGAACATCAAGGAAATTAGAATACAAAG
CATGGAAATTGAGTTCAATAGAGGCTCTCTTCATAACAAGGTACTGAGAAAGCCAGGGAT
AGTATTCATCGGTAAGTACTTCCTTAAGTTCTTCACATTTGGTTTGCAAATTAAGTTGAC
TAAGATTGTTAAAAATGAAAGCAGTTTTATCTTGTATGGGTTCTGGTGGGGCATTAATTT
TTTCTTCCCTGTCAGTAGCAGTCAAAAGAGTGTCGATATTTGTAGCGTTCGCGATAGATG
GCCTACTACCCATGCTTCCAGCAGGGCACGCGGCCATTTTCGACATCACCGAAATAGATG
GAGGAGCACAAACTACTGGCCTGTGGAAAAAATCACTATTCATTACGTGGGCTGCATTAA
AGTTAGTATATTGGTAATATCCAACTGATACGTACCTATAAGGCGCCGAGACAGTTACAA
CGGCACTCTGATTAAGAATAGCAGCCAACGTAGCAGGAAGTACCGGCCCCTGGGGTTTAT
TGGGAGGTTCTTGGCTTTGTAAGCCATATTCGACATATTCGATCAAATGGGGAGGGAATT
CACTAAAATGCGGAATAGCGCGAACGTGCTCACAATATTTGTGATAATCTTTAAGACGAG
ATTTAAAACGATCTAAAGCCGCAATTCCGAAATAATACATTTTCGATCCCTCGGCCTTTC
GTAAAGCATCAAGAACGAAACGCAACGCTAACCCTAAAGACACGTAGCTTGGGACTAATC
CTCTTTCGATGATACCGCCAAACAGTTGAGCAGTAATTTGTAACTCTTTGTCGGGGTATT
GGGGGAAAAACTTATACTCTTCAAAAAGATTACGCAACATGCATGAGAATACTTCCCGTT
CCCTCTTGTTAGGGGAATCCTGAAATTTTTTGAGCATATCTAGTACTTCGTCTATTGATA
AAGTCGGATGTGGAGGATGATTGTATATCCTTTGGAAGTAACTGTTTGCTTCGTCCTCGA
TTTCCTTAGCAACGGTGTGCATCACTTCCGGGAAGGGAATGGGATCCTGCAGACGAGGTT
TATCAATCGCGGGAGCGGGAGCCATTCTCGCGAGCGCTCCGAGGTTTGCGTTGGGCGGTA
ACGGCATCATGGCAAACGGACTGTTAGGTCCGCCTCCAAGTAGCCTAACAGGAGAGCCCG
GAGTGGTTACGAGTGGTCCGAGTGTACCGGGCATAGCAAATGCAGTATTCGCGGGGGCAC
CTAAAGTCATATTTGCCATGCCCGGTGCCAAATTACCGATAGCGTCAACGTGGGGTGTAA
ACAATTGCCCTCCTAGGCCAGCTGGATTGAATTGAGTTTCCATGACCCTTGTATGAGGTC
TTGCTATTCCCGCAATGTTTTGTCGTGTTTTGCTGAGTATTAACGTCTGACAGCTTCCTA
TTACGTTGTAAATAGCCTCCTGTAATTCTTGAGAAACATTTGGAATGCATAGTTGTAAGC
AAGCCAACATTGTTGTAATCGTTTCGGGTGGCAGCTGCGCAGCCTTAGGCAATTGTTCTT
CGGGTGCCTTGCCGAGCACCTGTGGACATCGCCTTTGTAAAAATTTCACCATAGCCGACA
CAAACGTCTCACCGTGATCTCTGATTTTGTCGGTCAACCATTTATCTAATTTGAGATACT
CCCTCCTAGACGCCAAACAAGCCAAATCAATAACAAACGGGAACGATTGTACATTCAATA
AGAGCGACAGCGCCTTTAAATCCTGTGCGACGTCCAAAATTCTAGATAATTTGGATTGGT
CACTCTCACCGCGTATGTACCAATCTGCCATTGAGTGCATGATGATAGGTTTTATGTTAG
GGTTCTGTGTATGCCAGGCGTGGTGGAGAATTATGCCTGAATTTGGATGATTACCTAGAA
ATATTGGAATCAGTGTCGTCAATAACTCTTGCCTAAAGACAGTAATCGGTGGACTGATTT
GCAGTAAAACTAAGAGCAAAATATCGGGACAATGTTGAAGTGGCATTTTAAAGAGTTCAT
GGACTTGCATGTAATAACCACGCTCTGCAGCATACAGCAGTAACTCCACTAAGTAGAGGC
AACGCCAAGTGCCCACTTCTTTGTTGTCGGTCTCAGGAGGAGATTTCAAAATGTCTATTG
ATACTGGATGAAAAGGATGATCGGCAAAACAGAATACGTCAGAATGTTTGAGAATGTGGC
TGATCAAACTCATCTGTCCTTCCAAATTCGTCCACCGTCGGCATAAATACTCAACGGGGA
ATATATTGGCCGGATAGCCGGCGCTCTGTAGACCAAGTCTCAGTATGGTGAATAGTAGGG
ATAGTCCTGTTCGGTCTGGTACAAAGAATTCTGGGTGATCCAGCTGTAGTATCACTTCCT
TCCAGTTCAGATTAGATGCTAATTCTTTTAATGTCTGAACAAATACTTCAGCATTCCATT
CACTGTGTGGATGTGCAGCTGGTTCTTTTTTAGCTTCATGACTCATCCAAAAGTTGCCTG
GTGTCTGTATTTGCGGACCGTCTTGTTGGTTACTGTGATAGCGAACCATCACAGCTATGA
TTCTAGCCACGTCTATTGCGGTTGGTTCTCTCGCACCAAAGTTTATCATATTGTTCTTGC
AATCCTCAACTGAAGTTGTAAAAGCATGGCCCATATCTCGGATAATATCTGGCAGGGAAT
TCTCCATCATGGCAGCAGCCATATCATCGGCTGAAGTCATTTCCTCGAGAGGTGTCTGAG
TGTCGTCCGGATAAATCAACGGTGCGAGTACTATCGGGACTACTTCACGAGGGAAGTCTG
ATCTCAGTCTCTTCAAAAACAAATCCTTCGTAACTGCCGCTAATTTGATATTGTCGAGCG
CGAGACTCGTGAGGAGTGACTGCAACACTTCAGGGCTGCATTCCTGAAGTCCTGCACGCT
CCGCCTGATGTCCCCGTTCTGCGTCGAGATAGCACTGTATTAAATCCAAGAATCTTTTCT
TCAAGTGCTGCTTTGCAACTGCAACTATCTCACTCTTTGTTGAATACCTTCTCAGAGCCA
ATGAAAAGGCAACATCCTCTGCTGTAGTTAACTTCAACAGTCTAGATAGTCGATTCAATA
GTGCATTTGTAGGCTTTAATAGCTTTGTTACAGAGCGTGTTGGATGATCAACAGCCCGGC
AAACAACTGTTGATTTAGCTGGATGATTGAGCAAGCCTGCCAACTGTTGTCCAAGAAGGG
AGGCGTGGATGCTATTAGTAGCTGCAGAAGTTGTACGGTCTCCGTCCCAAGCTATCCTTG
CCGCTTCAGTGAGAAGACATCTTAAAACTTGATTCTCTGCTTCCAAGCCATAGACACTGA
CAATCTGATTCAATTCTTGACTCGTCTGCTTGAAATTTTTCTTGTTTAAATTTACGACGA
GATAATGTATATGCGATAAGCTCAACGTTAAAGAGTCCAGGTTCATAGTTCCATTAATGC
AAAAACGAAAGCTTCAAACACGTTTGAAGCTTTCTCGATTTTTTATGATTTTCTACGACG
AACTTGTGTTCTTTGGTAGTTTTCTGACGAAATGATAATAAACCTAAGCCCAACATCACC
AATTTTATTGTTCACTTTGATAAAAACAACATAATTATTATCACCCCACTCAGCAATTTA
TAAATTAAATTTCAGTAGTAATCAGCACACGATGACGAAAGAACCAAAGTGGCTGCCTGC
TGCTTCGTGCCATGTTCGGAAAATTTTCGTGAACGTCCGCAGCCCAGAGAGTTACCATAG
ATCGGAAGAGCGT
(7693 bp)

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