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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoFB_comp10305_c0_seq1
Scaffold_idBomo_Chr1
NCBI non-redundant
(nr)		PREDICTED:_CCR4-NOT_transcription_complex_subunit_1_isoform_X2_[Bombyx_mori]
Ontology
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000288 P nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000932 C P-body
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006417 P regulation of translation
GO:0010606 P positive regulation of cytoplasmic mRNA processing body assembly
GO:0017148 P negative regulation of translation
GO:0030014 C CCR4-NOT complex
GO:0030015 C CCR4-NOT core complex
GO:0030331 F estrogen receptor binding
GO:0031047 P gene silencing by RNA
GO:0032947 F molecular adaptor activity
GO:0033147 P negative regulation of intracellular estrogen receptor signaling pathway
GO:0042974 F retinoic acid receptor binding
GO:0048387 P negative regulation of retinoic acid receptor signaling pathway
GO:0048589 P developmental growth
GO:0060213 P positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
GO:1900153 P positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
Transcript
Level		FPKM:7.65 TPM:8.38
ORF EntryO_BomoFB12973_complete:A_BomoFB_comp10305_c0_seq1
Sequence
(Nucleotide)
AAAATTTTTTTTTTTTTTTTTAAATATTAAACCACTTTTTATTTCCTTCAATTTTATAAA
GATAACATACAAATATTAAATTACTATTTTCAATTAACAAAAATTAAACACAATTAATAA
TAAATAAAAAAATACATAATAATTCAAATATTTTCATTGCCAATTTCAAATAACTCACAA
TTTAGTAATAATCATTGAAAGATTTATTTTTTATTTTTATACATGCATCAATTAATTTAT
TTATATATATATTATATATAAACCATTTGTGACCGTTGTTTAAGGATTAAGATATAAACA
CTTACACTACACATTTCACTATCACAGTGTCTTTAGAGAAAACGTTCACTTGTTTCAAAA
GTCATTTACTTCTTGAACAGCTTGTTCCACTGCATTGGGCCTTTGGGGGGTTGGGTAGAG
GTGGACGGCTGCGGCTGAGGCGCCTGGCTCGTGCTAGCCTCAGATTGGAAGCCTTTCTCA
GCATAGCTTTTGTACCCTTGCTTATGCCGGAGAGACTCCCAATTGGCGCGGCGCTACTCG
GCCGCTTCCCTCTCCCCCCCTCCCCCACCCGTTGTGTCGGCGATGCACGATCGCGCCACC
GAAGCGAACAGCTTCTCTATCTCCGGAGCGCAGTGTACAAATTCGTGGGACCAGAATTTG
TAGATGGGATTCTTGATTAGTTCGATGAAAGTGATGAGCAGACCCCAAGGGTGCGGACGG
TTGACGATCAGCCGTTCCAGGAGCATCCTGGTGATCTGTTCTTGTACTGCTTCCGAATTG
GCCTCCGCGAACAAGTAGAGGAGACAGCAAGAGAAGTAGTGCGTGTGACTGTTCGGGTAA
CGCAGCTGATTGGCTATCGCGTTCAAGAACAGGTACCGGCCTTCAAAATCGAAATCCACG
GTAAAGTTCTGGAAGATATCCATGTGAGCTGAATGTGCAATCGTCGACATATTCGGAGTT
TGCCCTTTAGCACGAATATAGGCAATGGCCTGTGTGCCGACGTACAAGACAACCGCGTTC
ATCAGCTGACTGTTGTATCGCTTGCCAGGCTCGTTCGCAACCTGCATATTTCCCCTTAAT
TCAGACAGGAAGGTAACTGGAGCTCTCGCTTTGAGGTACGCGTCCAAATCCTTCTTGAAC
TGTGACGCAGAGATGATCGTAGAATAGTTGATGACCGCACGAGGCGGTAGAGCAATTTCC
GGGAGCAAGTCAACTTTCAGATTCGGCGTGAACGGATCGGGAAGCCTCATGTTCCGCGGG
AAAGCGGACAGTATTAAATTGCGCATTTGAATGCAGTTCGGGGGGATTTCGTCACAGAAA
CCATAGTGGTAATCGCACAGGAACTCCGGGAAATCATGGAGTAAGACCAACAACACCTTG
AGGGTTCCTTTGTATAGCGTCATGACCGGAGGAGCAAGCTCAGTGTTACGCAGGAATGGA
TCAAGGAATTTGAACAGCTCAATGAGTAAGGTCGAGTACATTCCCCAGCCCTTTTGTTGT
GGAGTAACAGCTAGGACGCGGTTTATGAAGGCACGGTGGGCCACAATCTCGAGCCACGCG
TAACAGAATCCGGGAGCGACACTTGGTTTGATAATGCGAAGGGTGTGGCAGAACGCAGTC
AGAACCTGATAGTTCATAGATTCTAGAACAGGCTCAGCCATGTTCATGTCGAGGAACAGA
ATCAGGAGTAGGCGGTGGTACGGTAGCTGCTGGAAGTTGGTGCCCTGGTCATCGTGGTCC
TGGAGTAGCCAGCCAACTATAATGCCTAGAATCTTGTTCAGAAGGTTTAATTTCGGAGTG
GGATTTCCGCTATCGGCTGTATTCTTGATCAAAAGCGAGACAAGTTTGATAAAAGAGTCG
CACATGGTGTAGAATTTCTCACGTTTCTGAGGCACTGGAGGTGGATTAACCCTGTCCTCG
TTCAGAAGTTGGTATACATTCTCGATGCACATCTGCGAGGCCATTCTGAAGAATCTAGCG
ATCATGTCATCAGATTTGAGAATGCCGTTCATGTTCATTCGGTGGACATACAAGTTGAAG
TTCTGCGCCAGTTCGATCTCTGTCAGAGGACTGAGGAGAACATTCCTCCATTCACGGAGT
AAATTCTCAGTCTTCTCTTGAAGTCCGGGTGGGTCGTCATAGTTTTGTGCTCGAACTTGC
AGTATTCCAGAATGTATGTGGGCCGTCGGTCCGAGCGGTGACCTTTCGCCCAAATATGCA
CTAGGGTCCTGATTCACCCTCAAAATCTCGATCAGGGAGCCCAGACCCTCGGGCGGAGGC
GTCCTTGAGTGGGACATGACCCTCACTAACATTTCGGTCGTGTGGTACAAGTCAGATTCG
TTAACGTACATGTTATTTCTGTCATCGACAAGATACAGCTGTACTAGTTGCATAGCGAAT
GCTACCGCCACGTAGTTATTGCCATTGTCCATCATATGAGCAAGGGCGATATCATACTGT
GGTAGATTAACCAAATGGTTTCTGATAAGGCAGTCAACAGCCTCGATATTGTATCGGAGT
TCCTCCCTGCATTCAATCAAGCAGCAGGTGATCTGCTTGGAAGTCCAAACGTGTCCATAG
ACTCTGGCGTCTTCGAGTAGTTTCAGGACACGAAGGTGGATGTCGCGGTAGCGGGCCATC
ATTTCGATGTGTTCGTTGCTCGCACCGGGTGGGACTAAATGTCCATCAAGCAAACCATCT
ACAGCCTTCTGCAGTAGAGTACAGCCAGACACAATATCGCGACTCCGTCTCGCCATAAAC
AAGCACTCGAGCAGCGTATGCATGTTCGCTGCCTGGACAGCCAAGGAAGCCACACCTAAG
GAATTGGCAAGGAATAGTTCCGCAGTGTTTATCAGAGCGCCCATCTCGTCAGCGCCGTAC
ACTTGAGCTGGATTCATGAACAGCTGTGGAATCTGCTCTTGAGACGGCTTCGGGATGAAC
ATGCCCGCATCTCTGACGGGGACAAATCCCGGAATGTTGCATGCGAACTCTTCGTATACT
GATATCTGCATGTCTGTCGGACCTCCGACGCGCAGGCGGACTCTTTCCGGGATCCTTTCA
GTCTGGTAAGTCACGACGATGGTGTCATAATAGCGGCGGCCTTCTTGACGGGCCAGTTTT
CGCATTTCGTAATCGCTAATCAAGCGTTTGTCTAATTCAGGTAGAGCCTTCTCAACGGCT
GTCTTCTGAATGAAAGCGCAGGCCAGTTCCATGTTTTCAGTAGCAAGGACAGCAGCTGCA
CTCTCGATGATTTCTTTTTGTTGTTGTGTTGATGGCATGAGAGCAGTGATGAAAGCTGCC
TTCAGATTAGTGCTGATGGTGGTGATGATCTGCTCTCGGCATGTGATCATTGCCATGCCG
GCAGTCAAGTTGCGCATCATGTGATGAGCGCAGGTACGCATTCGAACTTCGTCAGGGTCC
AATGCGAAATCCTTCCGTATGATCTGTTCACAAGTTGTCAAAGCATACTTGATAGACCTA
TCAACGACTGGGTGAATCCATTCTTGGATCGATCTCTCGATCGCGGGCTTTACAAACTGT
TTAAGATGCGGGTAGTTTTGGAATAAGATTATGTGAGGGTTGAAACAAATCTTTTGTCCG
AACGCAGACGTGGAGGATACGTTCACATCCAAATAGTTGAACCTGGGTTCTGGCATACCG
AGCACGCCCATCAGACCAGGATCGGCGGGCACTAAGCCAGTTGGTGGAGGAGGGACAGGT
CCTGCCATTTCTTCAGCAGGAATCATCGGAGGCTGAGGCGGCATTATTGGTATCTGCGGC
GGTGGTACTTGAATTGGCGGGTTGACCGGCATTGTATTTGCGGCTTCTTTGTTTGGCTTC
GGCTGTGATAGTTGGAACTCAATCTGCCTCAATTTTTCAGGGTCTTTCAAGTAAAGGGAA
GGCTTCAAATCCATTATGTCCAGGCCTAAGTTTTTACACAATACTTCGATTTCAAATTTT
AGGTTCAATTTCAAGTCGGGTTCTTGATGTAGTTCTGCTAGAACGTTCATAAGGGCCATC
GTCCACGGGTTCGGAGGTTTAAATACTACACTTTTCGCGCAAGATTCTAAAACTTTCGCA
ACGAAAGGAACCACATAAAGCAGTTCTTGCTGGCCTTTATGATAGGCTTCGAGGACCAAC
GCCTTTAAATCCAAGTCGAGGAGGAGAATCGGCTGGTTTCTTGCAAGTGTTAGCATGCCG
AGCCAGTGACCAAGATTCTTGAGAAGCGATCGATCCGAGAAATTAGCGATTCCTTTATCT
GAACGCAATAACACACGGATATTGCGATAAGTTTCCTTTGTGACTAATTTATTTACTTCG
CGGACTTTAAGAACATCAAGGAAATTAGAATACAAAGCATGGAAATTGAGTTCAATAGAG
GCTCTCTTCATAACAAGGTACTGAGAAAGCCAGGGATAGTATTCATCGGTAAGTACTTCC
TTAAGTTCTTCACATTTGGTTTGCAAATTAAGTTGACTAAGATTGTTAAAAATGAAAGCA
GTTTTATCTTGTATGGGTTCTGGTGGGGCATTAATTTTTTCTTCCCTGTCAGTAGCAGTC
AAAAGAGTGTCGATATTTGTAGCGTTCGCGATAGATGGCCTACTACCCATGCTTCCAGCA
GGGCACGCGGCCATTTTCGACATCACCGAAATAGATGGAGGAGCACAAACTACTGGCCTG
TGGAAAAAATCACTATTCATTACGTGGGCTGCATTAAAGTTAGTATATTGGTAATATCCA
ACTGATACGTACCTATAAGGCGCCGAGACAGTTACAACGGCACTCTGATTAAGAATAGCA
GCCAACGTAGCAGGAAGTACCGGCCCCTGGGGTTTATTGGGAGGTTCTTGGCTTTGTAAG
CCATATTCGACATATTCGATCAAATGGGGAGGGAATTCACTAAAATGCGGAATAGCGCGA
ACGTGCTCACAATATTTGTGATAATCTTTAAGACGAGATTTAAAACGATCTAAAGCCGCA
ATTCCGAAATAATACATTTTCGATCCCTCGGCCTTTCGTAAAGCATCAAGAACGAAACGC
AACGCTAACCCTAAAGACACGTAGCTTGGGACTAATCCTCTTTCGATGATACCGCCAAAC
AGTTGAGCAGTAATTTGTAACTCTTTGTCGGGGTATTGGGGGAAAAACTTATACTCTTCA
AAAAGATTACGCAACATGCATGAGAATACTTCCCGTTCCCTCTTGTTAGGGGAATCCTGA
AATTTTTTGAGCATATCTAGTACTTCGTCTATTGATAAAGTCGGATGTGGAGGATGATTG
TATATCCTTTGGAAGTAACTGTTTGCTTCGTCCTCGATTTCCTTAGCAACGGTGTGCATC
ACTTCCGGGAAGGGAATGGGATCCTGCAGACGAGGTTTATCAATCGCGGGAGCGGGAGCC
ATTCTCGCGAGCGCTCCGAGGTTTGCGTTGGGCGGTAACGGCATCATGGCAAACGGACTG
TTAGGTCCGCCTCCAAGTAGCCTAACAGGAGAGCCCGGAGTGGTTACGAGTGGTCCGAGT
GTACCGGGCATAGCAAATGCAGTATTCGCGGGGGCACCTAAAGTCATATTTGCCATGCCC
GGTGCCAAATTACCGATAGCGTCAACGTGGGGTGTAAACAATTGCCCTCCTAGGCCAGCT
GGATTGAATTGAGTTTCCATGACCCTTGTATGAGGTCTTGCTATTCCCGCAATGTTTTGT
CGTGTTTTGCTGAGTATTAACGTCTGACAGCTTCCTATTACGTTGTAAATAGCCTCCTGT
AATTCTTGAGAAACATTTGGAATGCATAGTTGTAAGCAAGCCAACATTGTTGTAATCGTT
TCGGGTGGCAGCTGCGCAGCCTTAGGCAATTGTTCTTCGGGTGCCTTGCCGAGCACCTGT
GGACATCGCCTTTGTAAAAATTTCACCATAGCCGACACAAACGTCTCACCGTGATCTCTG
ATTTTGTCGGTCAACCATTTATCTAATTTGAGATACTCCCTCCTAGACGCCAAACAAGCC
AAATCAATAACAAACGGGAACGATTGTACATTCAATAAGAGCGACAGCGCCTTTAAATCC
TGTGCGACGTCCAAAATTCTAGATAATTTGGATTGGTCACTCTCACCGCGTATGTACCAA
TCTGCCATTGAGTGCATGATGATAGGTTTTATGTTAGGGTTCTGTGTATGCCAGGCGTGG
TGGAGAATTATGCCTGAATTTGGATGATTACCTAGAAATATTGGAATCAGTGTCGTCAAT
AACTCTTGCCTAAAGACAGTAATCGGTGGACTGATTTGCAGTAAAACTAAGAGCAAAATA
TCGGGACAATGTTGAAGTGGCATTTTAAAGAGTTCATGGACTTGCATGTAATAACCACGC
TCTGCAGCATACAGCAGTAACTCCACTAAGTAGAGGCAACGCCAAGTGCCCACTTCTTTG
TTGTCGGTCTCAGGAGGAGATTTCAAAATGTCTATTGATACTGGATGAAAAGGATGATCG
GCAAAACAGAATACGTCAGAATGTTTGAGAATGTGGCTGATCAAACTCATCTGTCCTTCC
AAATTCGTCCACCGTCGGCATAAATACTCAACGGGGAATATATTGGCCGGATAGCCGGCG
CTCTGTAGACCAAGTCTCAGTATGGTGAATAGTAGGGATAGTCCTGTTCGGTCTGGTACA
AAGAATTCTGGGTGATCCAGCTGTAGTATCACTTCCTTCCAGTTCAGATTAGATGCTAAT
TCTTTTAATGTCTGAACAAATACTTCAGCATTCCATTCACTGTGTGGATGTGCAGCTGGT
TCTTTTTTAGCTTCATGACTCATCCAAAAGTTGCCTGGTGTCTGTATTTGCGGACCGTCT
TGTTGGTTACTGTGATAGCGAACCATCACAGCTATGATTCTAGCCACGTCTATTGCGGTT
GGTTCTCTCGCACCAAAGTTTATCATATTGTTCTTGCAATCCTCAACTGAAGTTGTAAAA
GCATGGCCCATATCTCGGATAATATCTGGCAGGGAATTCTCCATCATGGCAGCAGCCATA
TCATCGGCTGAAGTCATTTCCTCGAGAGGTGTCTGAGTGTCGTCCGGATAAATCAACGGT
GCGAGTACTATCGGGACTACTTCACGAGGGAAGTCTGATCTCAGTCTCTTCAAAAACAAA
TCCTTCGTAACTGCCGCTAATTTGATATTGTCGAGCGCGAGACTCGTGAGGAGTGACTGC
AACACTTCAGGGCTGCATTCCTGAAGTCCTGCACGCTCCGCCTGATGTCCCCGTTCTGCG
TCGAGATAGCACTGTATTAAATCCAAGAATCTTTTCTTCAAGTGCTGCTTTGCAACTGCA
ACTATCTCACTCTTTGTTGAATACCTTCTCAGAGCCAATGAAAAGGCAACATCCTCTGCT
GTAGTTAACTTCAACAGTCTAGATAGTCGATTCAATAGTGCATTTGTAGGCTTTAATAGC
TTTGTTACAGAGCGTGTTGGATGATCAACAGCCCGGCAAACAACTGTTGATTTAGCTGGA
TGATTGAGCAAGCCTGCCAACTGTTGTCCAAGAAGGGAGGCGTGGATGCTATTAGTAGCT
GCAGAAGTTGTACGGTCTCCGTCCCAAGCTATCCTTGCCGCTTCAGTGAGAAGACATCTT
AAAACTTGATTCTCTGCTTCCAAGCCATAGACACTGACAATCTGATTCAATTCTTGACTC
GTCTGCTTGAAATTTTTCTTGTTTAAATTTACGACGAGATAATGTATATGCGATAAGCTC
AACGTTAAAGAGTCCAGGTTCATAGTTCCATTAATGCAAAAACGAAAGCTTCAAACACGT
TTGAAGCTTTCTCGATTTTTTATGATTTTCTACGACGAACTTGTGTTCTTTGGTAGTTTT
CTGACGAAATGATAATAAACCTAAGCCCAACATCACCAATTTTATTGTTCACTTTGATAA
AAACAACATAATTATTATCACCCCACTCAGCAATTTATAAATTAAATTTCAGTAGTAATC
AGCACACGATGACGAAAGAACCAAAGTGGCTGCCTGCTGCTTCGTGCCATGTTCGGAAAA
TTTTCGTGAACGTCCGCAGCCCAGAGAGTTACCATAGATCGGAAGAGCGT
(8090 bp)

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