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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoFB_comp10305_c0_seq4
Scaffold_idBomo_Chr1
NCBI non-redundant
(nr)		PREDICTED:_CCR4-NOT_transcription_complex_subunit_1_isoform_X3_[Bombyx_mori]
Ontology
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000288 P nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000932 C P-body
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006417 P regulation of translation
GO:0010606 P positive regulation of cytoplasmic mRNA processing body assembly
GO:0017148 P negative regulation of translation
GO:0030014 C CCR4-NOT complex
GO:0030015 C CCR4-NOT core complex
GO:0030331 F estrogen receptor binding
GO:0031047 P gene silencing by RNA
GO:0032947 F molecular adaptor activity
GO:0033147 P negative regulation of intracellular estrogen receptor signaling pathway
GO:0042974 F retinoic acid receptor binding
GO:0048387 P negative regulation of retinoic acid receptor signaling pathway
GO:0048589 P developmental growth
GO:0060213 P positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
GO:1900153 P positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
Transcript
Level		FPKM:1.63 TPM:1.78
ORF EntryO_BomoFB12979_complete:A_BomoFB_comp10305_c0_seq4
Sequence
(Nucleotide)
CTTCCATCTTTTCTCTTGCCACTTCTCTCCTCTAAACTTAACCCAACTTAAACCTAGCTT
AGCATTAGACTTTACCTTTCTCAGCATAGCTTTTGTACCCTTGCTTATGCCGGAGAGACT
CCCAATTGGCGCGGCGCTACTCGGCCGCTTCCCTCTCCCCCCCTCCCCCACCCGTTGTGT
CGGCGATGCACGATCGCGCCACCGAAGCGAACAGCTTCTCTATCTCCGGAGCGCAGTGTA
CAAATTCGTGGGACCAGAATTTGTAGATGGGATTCTTGATTAGTTCGATGAAAGTGATGA
GCAGACCCCAAGGGTGCGGACGGTTGACGATCAGCCGTTCCAGGAGCATCCTGGTGATCT
GTTCTTGTACTGCTTCCGAATTGGCCTCCGCGAACAAGTAGAGGAGACAGCAAGAGAAGT
AGTGCGTGTGACTGTTCGGGTAACGCAGCTGATTGGCTATCGCGTTCAAGAACAGGTACC
GGCCTTCAAAATCGAAATCCACGGTAAAGTTCTGGAAGATATCCATGTGAGCTGAATGTG
CAATCGTCGACATATTCGGAGTTTGCCCTTTAGCACGAATATAGGCAATGGCCTGTGTGC
CGACGTACAAGACAACCGCGTTCATCAGCTGACTGTTGTATCGCTTGCCAGGCTCGTTCG
CAACCTGCATATTTCCCCTTAATTCAGACAGGAAGGTAACTGGAGCTCTCGCTTTGAGGT
ACGCGTCCAAATCCTTCTTGAACTGTGACGCAGAGATGATCGTAGAATAGTTGATGACCG
CACGAGGCGGTAGAGCAATTTCCGGGAGCAAGTCAACTTTCAGATTCGGCGTGAACGGAT
CGGGAAGCCTCATGTTCCGCGGGAAAGCGGACAGTATTAAATTGCGCATTTGAATGCAGT
TCGGGGGGATTTCGTCACAGAAACCATAGTGGTAATCGCACAGGAACTCCGGGAAATCAT
GGAGTAAGACCAACAACACCTTGAGGGTTCCTTTGTATAGCGTCATGACCGGAGGAGCAA
GCTCAGTGTTACGCAGGAATGGATCAAGGAATTTGAACAGCTCAATGAGTAAGGTCGAGT
ACATTCCCCAGCCCTTTTGTTGTGGAGTAACAGCTAGGACGCGGTTTATGAAGGCACGGT
GGGCCACAATCTCGAGCCACGCGTAACAGAATCCGGGAGCGACACTTGGTTTGATAATGC
GAAGGGTGTGGCAGAACGCAGTCAGAACCTGATAGTTCATAGATTCTAGAACAGGCTCAG
CCATGTTCATGTCGAGGAACAGAATCAGGAGTAGGCGGTGGTACGGTAGCTGCTGGAAGT
TGGTGCCCTGGTCATCGTGGTCCTGGAGTAGCCAGCCAACTATAATGCCTAGAATCTTGT
TCAGAAGGTTTAATTTCGGAGTGGGATTTCCGCTATCGGCTGTATTCTTGATCAAAAGCG
AGACAAGTTTGATAAAAGAGTCGCACATGGTGTAGAATTTCTCACGTTTCTGAGGCACTG
GAGGTGGATTAACCCTGTCCTCGTTCAGAAGTTGGTATACATTCTCGATGCACATCTGCG
AGGCCATTCTGAAGAATCTAGCGATCATGTCATCAGATTTGAGAATGCCGTTCATGTTCA
TTCGGTGGACATACAAGTTGAAGTTCTGCGCCAGTTCGATCTCTGTCAGAGGACTGAGGA
GAACATTCCTCCATTCACGGAGTAAATTCTCAGTCTTCTCTTGAAGTCCGGGTGGGTCGT
CATAGTTTTGTGCTCGAACTTGCAGTATTCCAGAATGTATGTGGGCCGTCGGTCCGAGCG
GTGACCTTTCGCCCAAATATGCACTAGGGTCCTGATTCACCCTCAAAATCTCGATCAGGG
AGCCCAGACCCTCGGGCGGAGGCGTCCTTGAGTGGGACATGACCCTCACTAACATTTCGG
TCGTGTGGTACAAGTCAGATTCGTTAACGTACATGTTATTTCTGTCATCGACAAGATACA
GCTGTACTAGTTGCATAGCGAATGCTACCGCCACGTAGTTATTGCCATTGTCCATCATAT
GAGCAAGGGCGATATCATACTGTGGTAGATTAACCAAATGGTTTCTGATAAGGCAGTCAA
CAGCCTCGATATTGTATCGGAGTTCCTCCCTGCATTCAATCAAGCAGCAGGTGATCTGCT
TGGAAGTCCAAACGTGTCCATAGACTCTGGCGTCTTCGAGTAGTTTCAGGACACGAAGGT
GGATGTCGCGGTAGCGGGCCATCATTTCGATGTGTTCGTTGCTCGCACCGGGTGGGACTA
AATGTCCATCAAGCAAACCATCTACAGCCTTCTGCAGTAGAGTACAGCCAGACACAATAT
CGCGACTCCGTCTCGCCATAAACAAGCACTCGAGCAGCGTATGCATGTTCGCTGCCTGGA
CAGCCAAGGAAGCCACACCTAAGGAATTGGCAAGGAATAGTTCCGCAGTGTTTATCAGAG
CGCCCATCTCGTCAGCGCCGTACACTTGAGCTGGATTCATGAACAGCTGTGGAATCTGCT
CTTGAGACGGCTTCGGGATGAACATGCCCGCATCTCTGACGGGGACAAATCCCGGAATGT
TGCATGCGAACTCTTCGTATACTGATATCTGCATGTCTGTCGGACCTCCGACGCGCAGGC
GGACTCTTTCCGGGATCCTTTCAGTCTGGTAAGTCACGACGATGGTGTCATAATAGCGGC
GGCCTTCTTGACGGGCCAGTTTTCGCATTTCGTAATCGCTAATCAAGCGTTTGTCTAATT
CAGGTAGAGCCTTCTCAACGGCTGTCTTCTGAATGAAAGCGCAGGCCAGTTCCATGTTTT
CAGTAGCAAGGACAGCAGCTGCACTCTCGATGATTTCTTTTTGTTGTTGTGTTGATGGCA
TGAGAGCAGTGATGAAAGCTGCCTTCAGATTAGTGCTGATGGTGGTGATGATCTGCTCTC
GGCATGTGATCATTGCCATGCCGGCAGTCAAGTTGCGCATCATGTGATGAGCGCAGGTAC
GCATTCGAACTTCGTCAGGGTCCAATGCGAAATCCTTCCGTATGATCTGTTCACAAGTTG
TCAAAGCATACTTGATAGACCTATCAACGACTGGGTGAATCCATTCTTGGATCGATCTCT
CGATCGCGGGCTTTACAAACTGTTTAAGATGCGGGTAGTTTTGGAATAAGATTATGTGAG
GGTTGAAACAAATCTTTTGTCCGAACGCAGACGTGGAGGATACGTTCACATCCAAATAGT
TGAACCTGGGTTCTGGCATACCGAGCACGCCCATCAGACCAGGATCGGCGGGCACTAAGC
CAGTTGGTGGAGGAGGGACAGGTCCTGCCATTTCTTCAGCAGGAATCATCGGAGGCTGAG
GCGGCATTATTGGTATCTGCGGCGGTGGTACTTGAATTGGCGGGTTGACCGGCATTGTAT
TTGCGGCTTCTTTGTTTGGCTTCGGCTGTGATAGTTGGAACTCAATCTGCCTCAATTTTT
CAGGGTCTTTCAAGTAAAGGGAAGGCTTCAAATCCATTATGTCCAGGCCTAAGTTTTTAC
ACAATACTTCGATTTCAAATTTTAGGTTCAATTTCAAGTCGGGTTCTTGATGTAGTTCTG
CTAGAACGTTCATAAGGGCCATCGTCCACGGGTTCGGAGGTTTAAATACTACACTTTTCG
CGCAAGATTCTAAAACTTTCGCAACGAAAGGAACCACATAAAGCAGTTCTTGCTGGCCTT
TATGATAGGCTTCGAGGACCAACGCCTTTAAATCCAAGTCGAGGAGGAGAATCGGCTGGT
TTCTTGCAAGTGTTAGCATGCCGAGCCAGTGACCAAGATTCTTGAGAAGCGATCGATCCG
AGAAATTAGCGATTCCTTTATCTGAACGCAATAACACACGGATATTGCGATAAGTTTCCT
TTGTGACTAATTTATTTACTTCGCGGACTTTAAGAACATCAAGGAAATTAGAATACAAAG
CATGGAAATTGAGTTCAATAGAGGCTCTCTTCATAACAAGGTACTGAGAAAGCCAGGGAT
AGTATTCATCGGTAAGTACTTCCTTAAGTTCTTCACATTTGGTTTGCAAATTAAGTTGAC
TAAGATTGTTAAAAATGAAAGCAGTTTTATCTTGTATGGGTTCTGGTGGGGCATTAATTT
TTTCTTCCCTGTCAGTAGCAGTCAAAAGAGTGTCGATATTTGTAGCGTTCGCGATAGATG
GCCTACTACCCATGCTTCCAGCAGGGCACGCGGCCATTTTCGACATCACCGAAATAGATG
GAGGAGCACAAACTACTGGCCTATAAGGCGCCGAGACAGTTACAACGGCACTCTGATTAA
GAATAGCAGCCAACGTAGCAGGAAGTACCGGCCCCTGGGGTTTATTGGGAGGTTCTTGGC
TTTGTAAGCCATATTCGACATATTCGATCAAATGGGGAGGGAATTCACTAAAATGCGGAA
TAGCGCGAACGTGCTCACAATATTTGTGATAATCTTTAAGACGAGATTTAAAACGATCTA
AAGCCGCAATTCCGAAATAATACATTTTCGATCCCTCGGCCTTTCGTAAAGCATCAAGAA
CGAAACGCAACGCTAACCCTAAAGACACGTAGCTTGGGACTAATCCTCTTTCGATGATAC
CGCCAAACAGTTGAGCAGTAATTTGTAACTCTTTGTCGGGGTATTGGGGGAAAAACTTAT
ACTCTTCAAAAAGATTACGCAACATGCATGAGAATACTTCCCGTTCCCTCTTGTTAGGGG
AATCCTGAAATTTTTTGAGCATATCTAGTACTTCGTCTATTGATAAAGTCGGATGTGGAG
GATGATTGTATATCCTTTGGAAGTAACTGTTTGCTTCGTCCTCGATTTCCTTAGCAACGG
TGTGCATCACTTCCGGGAAGGGAATGGGATCCTGCAGACGAGGTTTATCAATCGCGGGAG
CGGGAGCCATTCTCGCGAGCGCTCCGAGGTTTGCGTTGGGCGGTAACGGCATCATGGCAA
ACGGACTGTTAGGTCCGCCTCCAAGTAGCCTAACAGGAGAGCCCGGAGTGGTTACGAGTG
GTCCGAGTGTACCGGGCATAGCAAATGCAGTATTCGCGGGGGCACCTAAAGTCATATTTG
CCATGCCCGGTGCCAAATTACCGATAGCGTCAACGTGGGGTGTAAACAATTGCCCTCCTA
GGCCAGCTGGATTGAATTGAGTTTCCATGACCCTTGTATGAGGTCTTGCTATTCCCGCAA
TGTTTTGTCGTGTTTTGCTGAGTATTAACGTCTGACAGCTTCCTATTACGTTGTAAATAG
CCTCCTGTAATTCTTGAGAAACATTTGGAATGCATAGTTGTAAGCAAGCCAACATTGTTG
TAATCGTTTCGGGTGGCAGCTGCGCAGCCTTAGGCAATTGTTCTTCGGGTGCCTTGCCGA
GCACCTGTGGACATCGCCTTTGTAAAAATTTCACCATAGCCGACACAAACGTCTCACCGT
GATCTCTGATTTTGTCGGTCAACCATTTATCTAATTTGAGATACTCCCTCCTAGACGCCA
AACAAGCCAAATCAATAACAAACGGGAACGATTGTACATTCAATAAGAGCGACAGCGCCT
TTAAATCCTGTGCGACGTCCAAAATTCTAGATAATTTGGATTGGTCACTCTCACCGCGTA
TGTACCAATCTGCCATTGAGTGCATGATGATAGGTTTTATGTTAGGGTTCTGTGTATGCC
AGGCGTGGTGGAGAATTATGCCTGAATTTGGATGATTACCTAGAAATATTGGAATCAGTG
TCGTCAATAACTCTTGCCTAAAGACAGTAATCGGTGGACTGATTTGCAGTAAAACTAAGA
GCAAAATATCGGGACAATGTTGAAGTGGCATTTTAAAGAGTTCATGGACTTGCATGTAAT
AACCACGCTCTGCAGCATACAGCAGTAACTCCACTAAGTAGAGGCAACGCCAAGTGCCCA
CTTCTTTGTTGTCGGTCTCAGGAGGAGATTTCAAAATGTCTATTGATACTGGATGAAAAG
GATGATCGGCAAAACAGAATACGTCAGAATGTTTGAGAATGTGGCTGATCAAACTCATCT
GTCCTTCCAAATTCGTCCACCGTCGGCATAAATACTCAACGGGGAATATATTGGCCGGAT
AGCCGGCGCTCTGTAGACCAAGTCTCAGTATGGTGAATAGTAGGGATAGTCCTGTTCGGT
CTGGTACAAAGAATTCTGGGTGATCCAGCTGTAGTATCACTTCCTTCCAGTTCAGATTAG
ATGCTAATTCTTTTAATGTCTGAACAAATACTTCAGCATTCCATTCACTGTGTGGATGTG
CAGCTGGTTCTTTTTTAGCTTCATGACTCATCCAAAAGTTGCCTGGTGTCTGTATTTGCG
GACCGTCTTGTTGGTTACTGTGATAGCGAACCATCACAGCTATGATTCTAGCCACGTCTA
TTGCGGTTGGTTCTCTCGCACCAAAGTTTATCATATTGTTCTTGCAATCCTCAACTGAAG
TTGTAAAAGCATGGCCCATATCTCGGATAATATCTGGCAGGGAATTCTCCATCATGGCAG
CAGCCATATCATCGGCTGAAGTCATTTCCTCGAGAGGTGTCTGAGTGTCGTCCGGATAAA
TCAACGGTGCGAGTACTATCGGGACTACTTCACGAGGGAAGTCTGATCTCAGTCTCTTCA
AAAACAAATCCTTCGTAACTGCCGCTAATTTGATATTGTCGAGCGCGAGACTCGTGAGGA
GTGACTGCAACACTTCAGGGCTGCATTCCTGAAGTCCTGCACGCTCCGCCTGATGTCCCC
GTTCTGCGTCGAGATAGCACTGTATTAAATCCAAGAATCTTTTCTTCAAGTGCTGCTTTG
CAACTGCAACTATCTCACTCTTTGTTGAATACCTTCTCAGAGCCAATGAAAAGGCAACAT
CCTCTGCTGTAGTTAACTTCAACAGTCTAGATAGTCGATTCAATAGTGCATTTGTAGGCT
TTAATAGCTTTGTTACAGAGCGTGTTGGATGATCAACAGCCCGGCAAACAACTGTTGATT
TAGCTGGATGATTGAGCAAGCCTGCCAACTGTTGTCCAAGAAGGGAGGCGTGGATGCTAT
TAGTAGCTGCAGAAGTTGTACGGTCTCCGTCCCAAGCTATCCTTGCCGCTTCAGTGAGAA
GACATCTTAAAACTTGATTCTCTGCTTCCAAGCCATAGACACTGACAATCTGATTCAATT
CTTGACTCGTCTGCTTGAAATTTTTCTTGTTTAAATTTACGACGAGATAATGTATATGCG
ATAAGCTCAACGTTAAAGAGTCCAGGTTCATAGTTCCATTAATGCAAAAACGAAAGCTTC
AAACACGTTTGAAGCTTTCTCGATTTTTTATGATTTTCTACGACGAACTTGTGTTCTTTG
GTAGTTTTCTGACGAAATGATAATAAACCTAAGCCCAACATCACCAATTTTATTGTTCAC
TTTGATAAAAACAACATAATTATTATCACCCCACTCAGCAATTTATAAATTAAATTTCAG
TAGTAATCAGCACACGATGACGAAAGAACCAAAGTGGCTGCCTGCTGCTTCGTGCCATGT
TCGGAAAATTTTCGTGAACGTCCGCAGCCCAGAGAGTTACCATAGATCGGAAGAGCGT
(7618 bp)

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