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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
2761 A_BomaMG_comp12933_c1_seq1
706bp
FPKM:3.42 TPM:3.17
2762 A_BomaMG_comp12935_c0_seq1
472bp
PREDICTED:_tyrosine-protein_kinase_CSK_isoform_X4_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0002119 P nematode larval development
GO:0004672 F protein kinase activity
GO:0004713 F protein tyrosine kinase activity
GO:0004715 F non-membrane spanning protein tyrosine kinase activity
GO:0005524 F ATP binding
GO:0005886 C plasma membrane
GO:0005911 C cell-cell junction
GO:0006468 P protein phosphorylation
GO:0009792 P embryo development ending in birth or egg hatching
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0018108 P peptidyl-tyrosine phosphorylation
GO:0030536 P larval feeding behavior
GO:0043050 P pharyngeal pumping
GO:0046872 F metal ion binding
GO:0048747 P muscle cell development
FPKM:4.87 TPM:4.51
2763 A_BomaMG_comp12935_c0_seq2
650bp
PREDICTED:_tyrosine-protein_kinase_CSK_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0002119 P nematode larval development
GO:0004672 F protein kinase activity
GO:0004713 F protein tyrosine kinase activity
GO:0004715 F non-membrane spanning protein tyrosine kinase activity
GO:0005524 F ATP binding
GO:0005886 C plasma membrane
GO:0005911 C cell-cell junction
GO:0006468 P protein phosphorylation
GO:0009792 P embryo development ending in birth or egg hatching
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0018108 P peptidyl-tyrosine phosphorylation
GO:0030536 P larval feeding behavior
GO:0043050 P pharyngeal pumping
GO:0046872 F metal ion binding
GO:0048747 P muscle cell development
FPKM:1.18 TPM:1.09
2764 A_BomaMG_comp12936_c0_seq1
1529bp
PREDICTED:_wee1-like_protein_kinase_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0000278 P mitotic cell cycle
GO:0000280 P nuclear division
GO:0000287 F magnesium ion binding
GO:0001700 P embryonic development via the syncytial blastoderm
GO:0004672 F protein kinase activity
GO:0004713 F protein tyrosine kinase activity
GO:0004715 F non-membrane spanning protein tyrosine kinase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005875 C microtubule associated complex
GO:0006468 P protein phosphorylation
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0007093 P mitotic cell cycle checkpoint signaling
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0018108 P peptidyl-tyrosine phosphorylation
GO:0045448 P mitotic cell cycle, embryonic
GO:0045736 P negative regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0046872 F metal ion binding
GO:0051225 P spindle assembly
GO:0051299 P centrosome separation
GO:0051301 P cell division
GO:0051642 P centrosome localization
FPKM:5.12 TPM:4.74
2765 A_BomaMG_comp129391_c0_seq1
733bp
FPKM:1.66 TPM:1.54
2766 A_BomaMG_comp12939_c0_seq1
347bp
PREDICTED:_mitogen-activated_protein_kinase_kinase_kinase_4,_partial_[Bombyx_mori]
GO:0000165 P MAPK cascade
GO:0000166 F nucleotide binding
GO:0000186 P obsolete activation of MAPKK activity
GO:0001890 P placenta development
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004702 F obsolete signal transducer, downstream of receptor, with serine/threonine kinase activity
GO:0004709 F MAP kinase kinase kinase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0006468 P protein phosphorylation
GO:0010225 P response to UV-C
GO:0010468 P regulation of gene expression
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0019100 P male germ-line sex determination
GO:0032212 P positive regulation of telomere maintenance via telomerase
GO:0035556 P intracellular signal transduction
GO:0043507 P positive regulation of JUN kinase activity
GO:0046872 F metal ion binding
GO:0048263 P determination of dorsal identity
GO:0048471 C perinuclear region of cytoplasm
GO:0051973 P positive regulation of telomerase activity
GO:0060718 P chorionic trophoblast cell differentiation
GO:1900745 P positive regulation of p38MAPK cascade
GO:1904355 P positive regulation of telomere capping
FPKM:8.58 TPM:7.95
2767 A_BomaMG_comp12940_c0_seq1
711bp
PREDICTED:_pre-mRNA-processing_factor_39_isoform_X2_[Amyelois_transitella]
GO:0000243 C commitment complex
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000395 P mRNA 5'-splice site recognition
GO:0000398 P mRNA splicing, via spliceosome
GO:0005634 C nucleus
GO:0005685 C U1 snRNP
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0030627 F pre-mRNA 5'-splice site binding
GO:0071004 C U2-type prespliceosome
FPKM:6.01 TPM:5.57
2768 A_BomaMG_comp129426_c0_seq1
308bp
FPKM:2.92 TPM:2.71
2769 A_BomaMG_comp129447_c0_seq1
467bp
methyltransferase_[Aliivibrio_wodanis]
FPKM:2.49 TPM:2.31
2770 A_BomaMG_comp12945_c0_seq1
368bp
UTP11-like_U3_small_nucleolar_ribonucleoprotein_[Bombyx_mori]
FPKM:0.37 TPM:0.34
2771 A_BomaMG_comp12945_c0_seq2
852bp
UTP11-like_U3_small_nucleolar_ribonucleoprotein_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005615 C extracellular space
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006364 P rRNA processing
GO:0007399 P nervous system development
GO:0032040 C small-subunit processome
GO:0042274 P ribosomal small subunit biogenesis
GO:0043065 P positive regulation of apoptotic process
GO:0044822 F RNA binding
FPKM:6.61 TPM:6.12
2772 A_BomaMG_comp12946_c0_seq1
752bp
uncharacterized_protein_LOC778500_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
FPKM:5.05 TPM:4.67
2773 A_BomaMG_comp12947_c0_seq1
1228bp
Splicing_factor_3A_subunit_1_[Papilio_machaon]
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000389 P mRNA 3'-splice site recognition
GO:0000398 P mRNA splicing, via spliceosome
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005684 C U2-type spliceosomal complex
GO:0005686 C U2 snRNP
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0044822 F RNA binding
GO:0071004 C U2-type prespliceosome
GO:0071013 C catalytic step 2 spliceosome
FPKM:5.92 TPM:5.48
2774 A_BomaMG_comp12948_c0_seq1
1583bp
ICE-2_[Bombyx_mori]
GO:0004197 F cysteine-type endopeptidase activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0006508 P proteolysis
GO:0006915 P apoptotic process
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0010165 P response to X-ray
GO:0010623 P programmed cell death involved in cell development
GO:0012501 P programmed cell death
GO:0016322 P neuron remodeling
GO:0016787 F hydrolase activity
GO:0035070 P salivary gland histolysis
GO:0035103 P sterol regulatory element binding protein cleavage
GO:0045476 P nurse cell apoptotic process
GO:0046668 P regulation of retinal cell programmed cell death
GO:0046672 P positive regulation of compound eye retinal cell programmed cell death
GO:0048515 P spermatid differentiation
GO:0097153 F cysteine-type endopeptidase activity involved in apoptotic process
GO:0097194 P execution phase of apoptosis
GO:0097200 F cysteine-type endopeptidase activity involved in execution phase of apoptosis
GO:1990525 F BIR domain binding
GO:2001269 P positive regulation of cysteine-type endopeptidase activity involved in apoptotic signaling pathway
FPKM:80.36 TPM:74.41
2775 A_BomaMG_comp12948_c0_seq2
1667bp
ICE-5_[Bombyx_mori]
GO:0004197 F cysteine-type endopeptidase activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0006508 P proteolysis
GO:0006915 P apoptotic process
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0010165 P response to X-ray
GO:0010623 P programmed cell death involved in cell development
GO:0012501 P programmed cell death
GO:0016322 P neuron remodeling
GO:0016787 F hydrolase activity
GO:0035070 P salivary gland histolysis
GO:0035103 P sterol regulatory element binding protein cleavage
GO:0045476 P nurse cell apoptotic process
GO:0046668 P regulation of retinal cell programmed cell death
GO:0046672 P positive regulation of compound eye retinal cell programmed cell death
GO:0048515 P spermatid differentiation
GO:0097153 F cysteine-type endopeptidase activity involved in apoptotic process
GO:0097194 P execution phase of apoptosis
GO:0097200 F cysteine-type endopeptidase activity involved in execution phase of apoptosis
GO:1990525 F BIR domain binding
GO:2001269 P positive regulation of cysteine-type endopeptidase activity involved in apoptotic signaling pathway
FPKM:5.01 TPM:4.64
2776 A_BomaMG_comp12949_c0_seq1
4342bp
ABC_transporter_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0006810 P transport
GO:0007275 P multicellular organism development
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016887 F ATP hydrolysis activity
GO:0042626 F ATPase-coupled transmembrane transporter activity
GO:0055085 P transmembrane transport
FPKM:43.57 TPM:40.34
2777 A_BomaMG_comp12950_c0_seq1
854bp
hypothetical_protein_KGM_14676_[Danaus_plexippus]
GO:0000502 C proteasome complex
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0007275 P multicellular organism development
GO:0007283 P spermatogenesis
GO:0010499 P proteasomal ubiquitin-independent protein catabolic process
GO:0010952 P positive regulation of peptidase activity
GO:0016504 F peptidase activator activity
GO:0016607 C nuclear speck
GO:0030154 P cell differentiation
GO:0035093 P spermatogenesis, exchange of chromosomal proteins
GO:0070577 F lysine-acetylated histone binding
GO:1990111 C spermatoproteasome complex
FPKM:4.88 TPM:4.52
2778 A_BomaMG_comp12951_c0_seq1
2690bp
PREDICTED:_glycosylated_lysosomal_membrane_protein_A-like_[Bombyx_mori]
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:5.07 TPM:4.69
2779 A_BomaMG_comp12951_c0_seq2
1239bp
FPKM:0.00 TPM:0.00
2780 A_BomaMG_comp12953_c0_seq1
470bp
PREDICTED:_uncharacterized_protein_LOC101744804_isoform_X1_[Bombyx_mori]
FPKM:27.36 TPM:25.33
2781 A_BomaMG_comp12953_c0_seq2
265bp
PREDICTED:_uncharacterized_protein_LOC101744804_isoform_X1_[Bombyx_mori]
FPKM:17.69 TPM:16.38
2782 A_BomaMG_comp12954_c0_seq1
1188bp
PREDICTED:_mitochondrial_inner_membrane_protein_COX18-like_isoform_X1_[Amyelois_transitella]
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0008535 P respiratory chain complex IV assembly
GO:0008565 F obsolete protein transporter activity
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0031305 C integral component of mitochondrial inner membrane
GO:0051204 P protein insertion into mitochondrial membrane
GO:0051205 P protein insertion into membrane
FPKM:4.98 TPM:4.61
2783 A_BomaMG_comp12955_c0_seq1
2241bp
sex-specific_storage-protein_2_precursor_[Bombyx_mori]
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0045735 F nutrient reservoir activity
FPKM:34.31 TPM:31.77
2784 A_BomaMG_comp12956_c0_seq1
910bp
PREDICTED:_trithorax_group_protein_osa_[Bombyx_mori]
FPKM:3.90 TPM:3.61
2785 A_BomaMG_comp12956_c1_seq1
926bp
PREDICTED:_trithorax_group_protein_osa_[Bombyx_mori]
FPKM:3.73 TPM:3.45
2786 A_BomaMG_comp12957_c0_seq1
590bp
PREDICTED:_probable_small_nuclear_ribonucleoprotein_G_[Plutella_xylostella]
GO:0000398 P mRNA splicing, via spliceosome
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0005682 C U5 snRNP
GO:0005685 C U1 snRNP
GO:0005686 C U2 snRNP
GO:0005687 C U4 snRNP
GO:0005689 C U12-type spliceosomal complex
GO:0005732 C sno(s)RNA-containing ribonucleoprotein complex
GO:0006397 P mRNA processing
GO:0007052 P mitotic spindle organization
GO:0008380 P RNA splicing
GO:0019233 P sensory perception of pain
GO:0030529 C ribonucleoprotein complex
GO:0030532 C small nuclear ribonucleoprotein complex
GO:0034719 C SMN-Sm protein complex
GO:0043186 C P granule
GO:0044822 F RNA binding
GO:0071004 C U2-type prespliceosome
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
GO:0097526 C spliceosomal tri-snRNP complex
FPKM:37.08 TPM:34.33
2787 A_BomaMG_comp12958_c0_seq1
1602bp
PREDICTED:_uncharacterized_protein_LOC106711079_[Papilio_machaon]
FPKM:4.05 TPM:3.75
2788 A_BomaMG_comp12959_c0_seq1
670bp
neuropeptide_F_1_isoform_b_precursor_[Bombyx_mori]
FPKM:7.19 TPM:6.66
2789 A_BomaMG_comp12959_c0_seq2
547bp
neuropeptide_F_1_isoform_a_precursor_[Bombyx_mori]
GO:0005576 C extracellular region
GO:0007218 P neuropeptide signaling pathway
FPKM:49.08 TPM:45.45
2790 A_BomaMG_comp12960_c0_seq1
2272bp
PREDICTED:_von_Willebrand_factor_A_domain-containing_protein_8_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0008152 P metabolic process
GO:0016887 F ATP hydrolysis activity
FPKM:0.54 TPM:0.50
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