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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
2731 A_BomaMG_comp12900_c0_seq2
2052bp
PREDICTED:_SH3_domain-containing_protein_19_isoform_X1_[Papilio_xuthus]
GO:0005515 F protein binding
FPKM:2.72 TPM:2.52
2732 A_BomaMG_comp12901_c0_seq1
217bp
FPKM:0.76 TPM:0.71
2733 A_BomaMG_comp12902_c0_seq1
406bp
PREDICTED:_talin-1_[Bombyx_mori]
GO:0001726 C ruffle
GO:0003779 F actin binding
GO:0005200 F structural constituent of cytoskeleton
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005916 C fascia adherens
GO:0005925 C focal adhesion
GO:0007016 P obsolete cytoskeletal anchoring at plasma membrane
GO:0007155 P cell adhesion
GO:0016020 C membrane
GO:0030054 C cell junction
GO:0045202 C synapse
GO:0051015 F actin filament binding
FPKM:6.95 TPM:6.43
2734 A_BomaMG_comp12903_c0_seq1
280bp
FPKM:1.68 TPM:1.56
2735 A_BomaMG_comp12904_c0_seq1
987bp
PREDICTED:_lipopolysaccharide-induced_tumor_necrosis_factor-alpha_factor_homolog_[Bombyx_mori]
GO:0005125 F cytokine activity
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
FPKM:25.72 TPM:23.82
2736 A_BomaMG_comp12910_c0_seq1
1823bp
PREDICTED:_histone-lysine_N-methyltransferase_2D-like,_partial_[Bombyx_mori]
GO:0001555 P oocyte growth
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006342 P heterochromatin assembly
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008168 F methyltransferase activity
GO:0008270 F zinc ion binding
GO:0008284 P positive regulation of cell population proliferation
GO:0016568 P chromatin organization
GO:0016740 F transferase activity
GO:0018024 F histone-lysine N-methyltransferase activity
GO:0032259 P methylation
GO:0033148 P positive regulation of intracellular estrogen receptor signaling pathway
GO:0035097 C histone methyltransferase complex
GO:0042800 F histone methyltransferase activity (H3-K4 specific)
GO:0043627 P response to estrogen
GO:0044212 F transcription cis-regulatory region binding
GO:0044666 C MLL3/4 complex
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0048477 P oogenesis
GO:0051568 P histone H3-K4 methylation
GO:1904837 P beta-catenin-TCF complex assembly
FPKM:3.36 TPM:3.11
2737 A_BomaMG_comp12913_c0_seq1
3069bp
hypothetical_protein_KGM_20770_[Danaus_plexippus]
GO:0003676 F nucleic acid binding
GO:0004483 F mRNA (nucleoside-2'-O-)-methyltransferase activity
GO:0005634 C nucleus
GO:0006370 P 7-methylguanosine mRNA capping
GO:0006397 P mRNA processing
GO:0008168 F methyltransferase activity
GO:0016740 F transferase activity
GO:0032259 P methylation
GO:0080009 P mRNA methylation
GO:0097309 P cap1 mRNA methylation
FPKM:4.08 TPM:3.77
2738 A_BomaMG_comp129140_c0_seq1
270bp
titin2_[Bombyx_mori]
FPKM:0.74 TPM:0.69
2739 A_BomaMG_comp12915_c0_seq1
473bp
PREDICTED:_uncharacterized_protein_LOC101744165_[Bombyx_mori]
FPKM:3.37 TPM:3.12
2740 A_BomaMG_comp12916_c0_seq1
2168bp
hypothetical_protein_KGM_00557_[Danaus_plexippus]
GO:0000118 C histone deacetylase complex
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006915 P apoptotic process
GO:0007275 P multicellular organism development
GO:0016235 C aggresome
GO:0016607 C nuclear speck
GO:0018024 F histone-lysine N-methyltransferase activity
GO:0030154 P cell differentiation
GO:0030512 P negative regulation of transforming growth factor beta receptor signaling pathway
GO:0034968 P histone lysine methylation
GO:0042803 F protein homodimerization activity
GO:0043069 P negative regulation of programmed cell death
GO:0043231 C intracellular membrane-bounded organelle
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046329 P negative regulation of JNK cascade
GO:0046872 F metal ion binding
GO:0051726 P regulation of cell cycle
GO:0071425 P hematopoietic stem cell proliferation
FPKM:3.58 TPM:3.31
2741 A_BomaMG_comp12916_c0_seq2
1616bp
hypothetical_protein_KGM_00557_[Danaus_plexippus]
FPKM:0.25 TPM:0.24
2742 A_BomaMG_comp12917_c0_seq1
519bp
PREDICTED:_solute_carrier_family_12_member_9_isoform_X1_[Bombyx_mori]
GO:0005215 F transporter activity
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006821 P chloride transport
GO:0015379 F potassium:chloride symporter activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022820 F potassium:chloride symporter activity
GO:0055085 P transmembrane transport
GO:0071805 P potassium ion transmembrane transport
GO:1902476 P chloride transmembrane transport
FPKM:1.81 TPM:1.67
2743 A_BomaMG_comp12917_c1_seq1
278bp
hypothetical_protein_[Campylobacter_ureolyticus]
FPKM:1.72 TPM:1.59
2744 A_BomaMG_comp12918_c0_seq1
864bp
PREDICTED:_kinesin-like_protein_Klp10A_isoform_X3_[Plutella_xylostella]
GO:0000166 F nucleotide binding
GO:0000212 P meiotic spindle organization
GO:0000775 C chromosome, centromeric region
GO:0000922 C spindle pole
GO:0003774 F cytoskeletal motor activity
GO:0003777 F microtubule motor activity
GO:0005524 F ATP binding
GO:0005694 C chromosome
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005828 C kinetochore microtubule
GO:0005856 C cytoskeleton
GO:0005871 C kinesin complex
GO:0005874 C microtubule
GO:0007018 P microtubule-based movement
GO:0007019 P microtubule depolymerization
GO:0007049 P cell cycle
GO:0007051 P spindle organization
GO:0007052 P mitotic spindle organization
GO:0007057 P spindle assembly involved in female meiosis I
GO:0007059 P chromosome segregation
GO:0007067 P mitotic cell cycle
GO:0007079 P mitotic chromosome movement towards spindle pole
GO:0008017 F microtubule binding
GO:0008152 P metabolic process
GO:0008574 F plus-end-directed microtubule motor activity
GO:0051296 P establishment of meiotic spindle orientation
GO:0051298 P centrosome duplication
GO:0051301 P cell division
GO:0055028 C cortical microtubule
GO:0061673 C mitotic spindle astral microtubule
GO:0072687 C meiotic spindle
GO:0090307 P mitotic spindle assembly
GO:0090619 C meiotic spindle pole
GO:0097431 C mitotic spindle pole
FPKM:5.26 TPM:4.87
2745 A_BomaMG_comp1291_c0_seq1
326bp
alpha-mannosidase_[Robinsoniella_peoriensis]
FPKM:1.17 TPM:1.08
2746 A_BomaMG_comp1291_c1_seq1
220bp
FPKM:2.89 TPM:2.68
2747 A_BomaMG_comp12920_c0_seq1
1527bp
eukaryotic_initiation_factor_4A-III_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003743 F translation initiation factor activity
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0006397 P mRNA processing
GO:0006413 P translational initiation
GO:0006810 P transport
GO:0006974 P cellular response to DNA damage stimulus
GO:0007275 P multicellular organism development
GO:0008380 P RNA splicing
GO:0010468 P regulation of gene expression
GO:0010501 P RNA secondary structure unwinding
GO:0016281 C eukaryotic translation initiation factor 4F complex
GO:0016787 F hydrolase activity
GO:0045451 P pole plasm oskar mRNA localization
GO:0045495 C pole plasm
GO:0046579 P positive regulation of Ras protein signal transduction
GO:0051028 P mRNA transport
GO:0070374 P positive regulation of ERK1 and ERK2 cascade
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
GO:1903040 P exon-exon junction complex assembly
FPKM:38.85 TPM:35.97
2748 A_BomaMG_comp12922_c0_seq1
391bp
PREDICTED:_AP-3_complex_subunit_beta-2_[Bombyx_mori]
FPKM:7.28 TPM:6.74
2749 A_BomaMG_comp12923_c0_seq1
1148bp
PREDICTED:_protein-lysine_N-methyltransferase_EEF2KMT_[Amyelois_transitella]
GO:0005575 C cellular_component
GO:0005737 C cytoplasm
GO:0008168 F methyltransferase activity
GO:0016279 F protein-lysine N-methyltransferase activity
GO:0016740 F transferase activity
GO:0018023 P peptidyl-lysine trimethylation
GO:0032259 P methylation
FPKM:3.47 TPM:3.21
2750 A_BomaMG_comp12924_c0_seq1
1070bp
ALY_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003697 F single-stranded DNA binding
GO:0003723 F RNA binding
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0006810 P transport
GO:0008380 P RNA splicing
GO:0051028 P mRNA transport
FPKM:75.50 TPM:69.91
2751 A_BomaMG_comp12924_c1_seq1
672bp
FPKM:5.25 TPM:4.86
2752 A_BomaMG_comp12928_c0_seq1
3966bp
PREDICTED:_fatty-acid_amide_hydrolase_2-A_[Papilio_machaon]
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0016884 F carbon-nitrogen ligase activity, with glutamine as amido-N-donor
FPKM:55.59 TPM:51.47
2753 A_BomaMG_comp129290_c0_seq1
1514bp
PREDICTED:_nuclear_inhibitor_of_protein_phosphatase_1_[Papilio_machaon]
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0004864 F protein phosphatase inhibitor activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0007275 P multicellular organism development
GO:0008283 P cell population proliferation
GO:0008380 P RNA splicing
GO:0008599 F protein phosphatase regulator activity
GO:0016607 C nuclear speck
GO:0043086 P negative regulation of catalytic activity
GO:0050790 P regulation of catalytic activity
FPKM:2.36 TPM:2.19
2754 A_BomaMG_comp12929_c0_seq1
354bp
PREDICTED:_myotubularin-related_protein_3_[Bombyx_mori]
GO:0004438 F phosphatidylinositol-3-phosphatase activity
GO:0004721 F phosphoprotein phosphatase activity
GO:0004722 F protein serine/threonine phosphatase activity
GO:0004725 F protein tyrosine phosphatase activity
GO:0005515 F protein binding
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006470 P protein dephosphorylation
GO:0006629 P lipid metabolic process
GO:0006661 P phosphatidylinositol biosynthetic process
GO:0016020 C membrane
GO:0016236 P macroautophagy
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0016791 F phosphatase activity
GO:0019898 C extrinsic component of membrane
GO:0035335 P peptidyl-tyrosine dephosphorylation
GO:0042149 P cellular response to glucose starvation
GO:0046856 P phosphatidylinositol dephosphorylation
GO:0046872 F metal ion binding
GO:0052629 F phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity
GO:1904562 P phosphatidylinositol 5-phosphate metabolic process
GO:2000785 P regulation of autophagosome assembly
FPKM:8.63 TPM:7.99
2755 A_BomaMG_comp12930_c0_seq1
288bp
FPKM:0.31 TPM:0.29
2756 A_BomaMG_comp12930_c1_seq1
1539bp
PREDICTED:_quinone_oxidoreductase_isoform_X1_[Bombyx_mori]
GO:0004022 F alcohol dehydrogenase (NAD+) activity
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006066 P alcohol metabolic process
GO:0006091 P generation of precursor metabolites and energy
GO:0008270 F zinc ion binding
GO:0016491 F oxidoreductase activity
GO:0055114 P obsolete oxidation-reduction process
FPKM:5.43 TPM:5.03
2757 A_BomaMG_comp12931_c0_seq1
342bp
PREDICTED:_transmembrane_protein_131_homolog_[Papilio_machaon]
FPKM:21.69 TPM:20.09
2758 A_BomaMG_comp12931_c1_seq1
435bp
PREDICTED:_transmembrane_protein_131_homolog_[Papilio_machaon]
GO:0003674 F molecular_function
GO:0008150 P biological_process
GO:0012505 C endomembrane system
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:6.69 TPM:6.19
2759 A_BomaMG_comp12932_c0_seq1
3156bp
PREDICTED:_dihydroxyacetone_phosphate_acyltransferase_isoform_X2_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0005102 F signaling receptor binding
GO:0005739 C mitochondrion
GO:0005777 C peroxisome
GO:0005778 C peroxisomal membrane
GO:0006650 P glycerophospholipid metabolic process
GO:0007416 P synapse assembly
GO:0007584 P response to nutrient
GO:0008152 P metabolic process
GO:0008374 F O-acyltransferase activity
GO:0008611 P ether lipid biosynthetic process
GO:0016020 C membrane
GO:0016287 F glycerone-phosphate O-acyltransferase activity
GO:0016290 F palmitoyl-CoA hydrolase activity
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0021587 P cerebellum morphogenesis
GO:0030913 P paranodal junction assembly
GO:0042493 P response to xenobiotic stimulus
GO:0042552 P myelination
GO:0042594 P response to starvation
GO:0044255 P cellular lipid metabolic process
GO:0061024 P membrane organization
GO:0070542 P response to fatty acid
FPKM:4.89 TPM:4.53
2760 A_BomaMG_comp12933_c0_seq1
803bp
FPKM:4.63 TPM:4.29
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