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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
2491 A_BomaMG_comp12657_c1_seq1
222bp
NADPH_oxidoreductase_[Bombyx_mori]
FPKM:2.80 TPM:2.59
2492 A_BomaMG_comp12659_c0_seq1
1846bp
defective_in_cullin_neddylation_protein_[Bombyx_mori]
GO:0000151 C ubiquitin ligase complex
GO:0003674 F molecular_function
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0009314 P response to radiation
GO:0010225 P response to UV-C
GO:0010332 P response to gamma radiation
GO:0016020 C membrane
GO:0030308 P negative regulation of cell growth
GO:0031624 F ubiquitin conjugating enzyme binding
GO:0032182 F ubiquitin-like protein binding
GO:0043065 P positive regulation of apoptotic process
GO:0045116 P protein neddylation
GO:0048471 C perinuclear region of cytoplasm
GO:0051443 P positive regulation of ubiquitin-protein transferase activity
GO:0097602 F cullin family protein binding
FPKM:2.67 TPM:2.47
2493 A_BomaMG_comp12659_c0_seq2
1865bp
defective_in_cullin_neddylation_protein_[Bombyx_mori]
GO:0000151 C ubiquitin ligase complex
GO:0003674 F molecular_function
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0009314 P response to radiation
GO:0010225 P response to UV-C
GO:0010332 P response to gamma radiation
GO:0016020 C membrane
GO:0030308 P negative regulation of cell growth
GO:0031624 F ubiquitin conjugating enzyme binding
GO:0032182 F ubiquitin-like protein binding
GO:0043065 P positive regulation of apoptotic process
GO:0045116 P protein neddylation
GO:0048471 C perinuclear region of cytoplasm
GO:0051443 P positive regulation of ubiquitin-protein transferase activity
GO:0097602 F cullin family protein binding
FPKM:1.28 TPM:1.18
2494 A_BomaMG_comp12660_c0_seq1
2538bp
PREDICTED:_ribonuclease_Oy_[Papilio_machaon]
GO:0003723 F RNA binding
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005576 C extracellular region
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0033897 F ribonuclease T2 activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
FPKM:34.66 TPM:32.10
2495 A_BomaMG_comp12661_c0_seq1
951bp
FPKM:2.15 TPM:1.99
2496 A_BomaMG_comp12662_c0_seq1
3227bp
PREDICTED:_E3_ubiquitin-protein_ligase_Su(dx)_[Bombyx_mori]
GO:0004842 F ubiquitin-protein transferase activity
GO:0005112 F Notch binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005938 C cell cortex
GO:0007219 P Notch signaling pathway
GO:0007275 P multicellular organism development
GO:0008586 P imaginal disc-derived wing vein morphogenesis
GO:0008587 P imaginal disc-derived wing margin morphogenesis
GO:0016348 P imaginal disc-derived leg joint morphogenesis
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0019904 F protein domain specific binding
GO:0019915 P lipid storage
GO:0031623 P receptor internalization
GO:0032880 P regulation of protein localization
GO:0035209 P pupal development
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0045746 P negative regulation of Notch signaling pathway
GO:0048190 P wing disc dorsal/ventral pattern formation
FPKM:37.21 TPM:34.45
2497 A_BomaMG_comp12663_c0_seq1
2303bp
PREDICTED:_pre-mRNA-splicing_factor_CWC22_homolog_[Bombyx_mori]
GO:0000398 P mRNA splicing, via spliceosome
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0006397 P mRNA processing
GO:0006909 P phagocytosis
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
GO:0071006 C U2-type catalytic step 1 spliceosome
GO:0071013 C catalytic step 2 spliceosome
FPKM:4.80 TPM:4.44
2498 A_BomaMG_comp12664_c0_seq1
320bp
PREDICTED:_fatty_acid_synthase-like_[Bombyx_mori]
FPKM:2.92 TPM:2.70
2499 A_BomaMG_comp12666_c0_seq1
753bp
PREDICTED:_histone_H2B,_partial_[Brassica_rapa]
GO:0000786 C nucleosome
GO:0000788 C nucleosome
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005811 C lipid droplet
GO:0006334 P nucleosome assembly
GO:0035267 C NuA4 histone acetyltransferase complex
GO:0046982 F protein heterodimerization activity
FPKM:22.77 TPM:21.08
2500 A_BomaMG_comp126671_c0_seq1
386bp
FPKM:0.99 TPM:0.92
2501 A_BomaMG_comp12667_c0_seq1
948bp
PREDICTED:_UPF0428_protein_CXorf56_homolog_[Amyelois_transitella]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
FPKM:5.48 TPM:5.07
2502 A_BomaMG_comp12668_c0_seq1
5468bp
cadherin-like_membrane_protein_precursor_[Bombyx_mori]
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0005911 C cell-cell junction
GO:0005925 C focal adhesion
GO:0007015 P actin filament organization
GO:0007155 P cell adhesion
GO:0007156 P homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007163 P establishment or maintenance of cell polarity
GO:0007267 P cell-cell signaling
GO:0009653 P anatomical structure morphogenesis
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016337 P cell-cell adhesion
GO:0016477 P cell migration
GO:0030027 C lamellipodium
GO:0030054 C cell junction
GO:0030175 C filopodium
GO:0048471 C perinuclear region of cytoplasm
GO:0070062 C extracellular exosome
FPKM:74.93 TPM:69.38
2503 A_BomaMG_comp12669_c0_seq1
312bp
FPKM:1.80 TPM:1.67
2504 A_BomaMG_comp1266_c0_seq1
267bp
hypothetical_protein_cypCar_00043026_[Cyprinus_carpio]
FPKM:1.15 TPM:1.06
2505 A_BomaMG_comp126701_c0_seq1
717bp
PREDICTED:_translation_initiation_factor_IF-2,_mitochondrial_isoform_X2_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0003743 F translation initiation factor activity
GO:0003924 F GTPase activity
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005654 C nucleoplasm
GO:0005739 C mitochondrion
GO:0006412 P translation
GO:0006413 P translational initiation
GO:0006446 P regulation of translational initiation
GO:0008135 F translation factor activity, RNA binding
GO:0032790 P ribosome disassembly
GO:0043024 F ribosomal small subunit binding
GO:0044822 F RNA binding
GO:0070124 P mitochondrial translational initiation
FPKM:2.78 TPM:2.58
2506 A_BomaMG_comp12670_c0_seq1
352bp
FPKM:4.37 TPM:4.04
2507 A_BomaMG_comp126715_c0_seq1
978bp
FPKM:2.04 TPM:1.89
2508 A_BomaMG_comp12671_c0_seq1
1648bp
PREDICTED:_peptidyl-prolyl_cis-trans_isomerase-like_2_[Amyelois_transitella]
GO:0000209 P protein polyubiquitination
GO:0000413 P protein peptidyl-prolyl isomerization
GO:0003755 F peptidyl-prolyl cis-trans isomerase activity
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0006457 P protein folding
GO:0016567 P protein ubiquitination
GO:0016853 F isomerase activity
GO:0016874 F ligase activity
GO:0034450 F ubiquitin-ubiquitin ligase activity
GO:0061630 F ubiquitin protein ligase activity
GO:0072659 P protein localization to plasma membrane
FPKM:1.04 TPM:0.97
2509 A_BomaMG_comp12671_c0_seq2
1705bp
PREDICTED:_peptidyl-prolyl_cis-trans_isomerase-like_2_isoform_X2_[Bombyx_mori]
GO:0000209 P protein polyubiquitination
GO:0000413 P protein peptidyl-prolyl isomerization
GO:0003755 F peptidyl-prolyl cis-trans isomerase activity
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005796 C Golgi lumen
GO:0005886 C plasma membrane
GO:0006457 P protein folding
GO:0016567 P protein ubiquitination
GO:0016853 F isomerase activity
GO:0016874 F ligase activity
GO:0034450 F ubiquitin-ubiquitin ligase activity
GO:0050900 P leukocyte migration
GO:0061630 F ubiquitin protein ligase activity
GO:0072659 P protein localization to plasma membrane
FPKM:3.81 TPM:3.53
2510 A_BomaMG_comp12672_c0_seq1
2229bp
ADIPOR-like_receptor_[Operophtera_brumata]
GO:0005886 C plasma membrane
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0007186 P G protein-coupled receptor signaling pathway
GO:0009755 P hormone-mediated signaling pathway
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0019395 P fatty acid oxidation
GO:0032024 P positive regulation of insulin secretion
GO:0033211 P adiponectin-activated signaling pathway
GO:0036099 P female germ-line stem cell population maintenance
GO:0042562 F hormone binding
GO:0042593 P glucose homeostasis
GO:0046872 F metal ion binding
GO:0070328 P triglyceride homeostasis
GO:0097003 F adipokinetic hormone receptor activity
FPKM:30.28 TPM:28.04
2511 A_BomaMG_comp12673_c0_seq1
222bp
PREDICTED:_forkhead_box_protein_K1_[Bombyx_mori]
GO:0000287 F magnesium ion binding
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006366 P transcription by RNA polymerase II
GO:0043231 C intracellular membrane-bounded organelle
GO:0043565 F sequence-specific DNA binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
FPKM:0.00 TPM:0.00
2512 A_BomaMG_comp12673_c0_seq2
244bp
PREDICTED:_forkhead_box_protein_K1_[Bombyx_mori]
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0000981 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007275 P multicellular organism development
GO:0007517 P muscle organ development
GO:0030154 P cell differentiation
GO:0030308 P negative regulation of cell growth
GO:0043565 F sequence-specific DNA binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
FPKM:4.02 TPM:3.72
2513 A_BomaMG_comp12673_c0_seq3
685bp
PREDICTED:_forkhead_box_protein_K1_[Bombyx_mori]
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0000981 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007275 P multicellular organism development
GO:0007517 P muscle organ development
GO:0030154 P cell differentiation
GO:0030308 P negative regulation of cell growth
GO:0043565 F sequence-specific DNA binding
GO:0045786 P negative regulation of cell cycle
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
FPKM:4.51 TPM:4.17
2514 A_BomaMG_comp12676_c0_seq1
2335bp
PREDICTED:_LOW_QUALITY_PROTEIN:_rho_guanine_nucleotide_exchange_factor_11_[Bombyx_mori]
GO:0001664 F G protein-coupled receptor binding
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005089 F guanyl-nucleotide exchange factor activity
GO:0005096 F GTPase activator activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0007186 P G protein-coupled receptor signaling pathway
GO:0016020 C membrane
GO:0035023 P regulation of Rho protein signal transduction
GO:0035556 P intracellular signal transduction
GO:0043547 P positive regulation of GTPase activity
GO:0070062 C extracellular exosome
FPKM:3.41 TPM:3.16
2515 A_BomaMG_comp12677_c0_seq1
370bp
PREDICTED:_mitogen-activated_protein_kinase_kinase_kinase_4,_partial_[Bombyx_mori]
FPKM:4.47 TPM:4.14
2516 A_BomaMG_comp12677_c0_seq2
616bp
PREDICTED:_mitogen-activated_protein_kinase_kinase_kinase_4,_partial_[Bombyx_mori]
GO:0000165 P MAPK cascade
GO:0000166 F nucleotide binding
GO:0000186 P obsolete activation of MAPKK activity
GO:0001890 P placenta development
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004702 F obsolete signal transducer, downstream of receptor, with serine/threonine kinase activity
GO:0004709 F MAP kinase kinase kinase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0006468 P protein phosphorylation
GO:0010225 P response to UV-C
GO:0010468 P regulation of gene expression
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0019100 P male germ-line sex determination
GO:0032212 P positive regulation of telomere maintenance via telomerase
GO:0035556 P intracellular signal transduction
GO:0043507 P positive regulation of JUN kinase activity
GO:0046872 F metal ion binding
GO:0048263 P determination of dorsal identity
GO:0048471 C perinuclear region of cytoplasm
GO:0051973 P positive regulation of telomerase activity
GO:0060718 P chorionic trophoblast cell differentiation
GO:1900745 P positive regulation of p38MAPK cascade
GO:1904355 P positive regulation of telomere capping
FPKM:5.16 TPM:4.77
2517 A_BomaMG_comp1267_c0_seq1
201bp
hypothetical_protein_[Dyadobacter_tibetensis]
FPKM:1.06 TPM:0.98
2518 A_BomaMG_comp126819_c0_seq1
346bp
PREDICTED:_alpha-glucosidase-like_[Fragaria_vesca_subsp._vesca]
FPKM:1.85 TPM:1.71
2519 A_BomaMG_comp126836_c0_seq1
503bp
PREDICTED:_intersectin-1_isoform_X4_[Bombyx_mori]
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005089 F guanyl-nucleotide exchange factor activity
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0005905 C clathrin-coated pit
GO:0006897 P endocytosis
GO:0007264 P small GTPase mediated signal transduction
GO:0012505 C endomembrane system
GO:0016020 C membrane
GO:0019209 F kinase activator activity
GO:0030027 C lamellipodium
GO:0030054 C cell junction
GO:0030139 C endocytic vesicle
GO:0032947 F molecular adaptor activity
GO:0035023 P regulation of Rho protein signal transduction
GO:0035556 P intracellular signal transduction
GO:0042327 P positive regulation of phosphorylation
GO:0042995 C cell projection
GO:0043005 C neuron projection
GO:0043065 P positive regulation of apoptotic process
GO:0043524 P negative regulation of neuron apoptotic process
GO:0043547 P positive regulation of GTPase activity
GO:0045202 C synapse
GO:0046872 F metal ion binding
GO:0048013 P ephrin receptor signaling pathway
GO:0048488 P synaptic vesicle endocytosis
GO:0051056 P regulation of small GTPase mediated signal transduction
GO:0051897 P positive regulation of protein kinase B signaling
GO:0070064 F proline-rich region binding
FPKM:1.69 TPM:1.56
2520 A_BomaMG_comp12686_c0_seq1
802bp
dnaJ_homolog_subfamily_C_member_16_precursor_[Bombyx_mori]
GO:0005623 C obsolete cell
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0045454 P cell redox homeostasis
FPKM:6.60 TPM:6.11
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