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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1171 A_BomaMSG_c11278_g1_i1
752bp
uncharacterized_protein_LOC101742255_[Bombyx_mori]
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0008028 F monocarboxylic acid transmembrane transporter activity
GO:0015293 F symporter activity
GO:0015718 P monocarboxylic acid transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0055085 P transmembrane transport
FPKM:1.90 TPM:0.85
1172 A_BomaMSG_c11279_g1_i1
710bp
tyrosine-protein_phosphatase_non-receptor_type_4_[Bombyx_mori]
GO:0004721 F phosphoprotein phosphatase activity
GO:0004725 F protein tyrosine phosphatase activity
GO:0004726 F non-membrane spanning protein tyrosine phosphatase activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0006470 P protein dephosphorylation
GO:0008092 F cytoskeletal protein binding
GO:0009898 C cytoplasmic side of plasma membrane
GO:0016020 C membrane
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0016791 F phosphatase activity
GO:0035335 P peptidyl-tyrosine dephosphorylation
FPKM:2.52 TPM:1.13
1173 A_BomaMSG_c1127_g1_i1
290bp
FPKM:7.66 TPM:3.42
1174 A_BomaMSG_c11281_g1_i1
1072bp
ubiquitin-conjugating_enzyme_E2L_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000209 P protein polyubiquitination
GO:0003713 F transcription coactivator activity
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008283 P cell population proliferation
GO:0016567 P protein ubiquitination
GO:0016740 F transferase activity
GO:0031398 P positive regulation of protein ubiquitination
GO:0031625 F ubiquitin protein ligase binding
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0044770 P cell cycle phase transition
GO:0044822 F RNA binding
GO:0051443 P positive regulation of ubiquitin-protein transferase activity
GO:0061631 F ubiquitin conjugating enzyme activity
GO:0070062 C extracellular exosome
GO:0070979 P protein K11-linked ubiquitination
GO:0071383 P cellular response to steroid hormone stimulus
GO:0071385 P cellular response to glucocorticoid stimulus
GO:0097027 F ubiquitin-protein transferase activator activity
GO:1903955 P positive regulation of protein targeting to mitochondrion
FPKM:47.03 TPM:21.02
1175 A_BomaMSG_c11283_g1_i1
585bp
cytochrome_C,_partial_[Acinetobacter_baumannii]
GO:0005739 C mitochondrion
GO:0005758 C mitochondrial intermembrane space
GO:0009055 F electron transfer activity
GO:0020037 F heme binding
GO:0046872 F metal ion binding
GO:0055114 P obsolete oxidation-reduction process
GO:0070469 C respirasome
FPKM:21.82 TPM:9.75
1176 A_BomaMSG_c11285_g1_i1
956bp
carbonyl_reductase_[NADPH]_3_[Bombyx_mori]
GO:0000253 F 3-keto sterol reductase activity
GO:0004090 F carbonyl reductase (NADPH) activity
GO:0005615 C extracellular space
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0008152 P metabolic process
GO:0016491 F oxidoreductase activity
GO:0042376 P phylloquinone catabolic process
GO:0050890 P cognition
GO:0055114 P obsolete oxidation-reduction process
GO:0070402 F NADPH binding
FPKM:62.23 TPM:27.81
1177 A_BomaMSG_c11287_g1_i1
419bp
FPKM:1.50 TPM:0.67
1178 A_BomaMSG_c11288_g1_i1
568bp
ankyrin_repeat_domain-containing_protein_SOWAHC_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
FPKM:3.38 TPM:1.51
1179 A_BomaMSG_c11288_g2_i1
216bp
ankyrin_repeat_domain-containing_protein_SOWAHC_[Bombyx_mori]
FPKM:0.00 TPM:0.00
1180 A_BomaMSG_c11288_g2_i2
293bp
ankyrin_repeat_domain-containing_protein_SOWAHC_[Bombyx_mori]
FPKM:2.35 TPM:1.05
1181 A_BomaMSG_c11290_g1_i1
340bp
replication_factor_C_subunit_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0003689 F DNA clamp loader activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005663 C DNA replication factor C complex
GO:0005875 C microtubule associated complex
GO:0006260 P DNA replication
GO:0006281 P DNA repair
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0019233 P sensory perception of pain
GO:0022008 P neurogenesis
GO:0046331 P lateral inhibition
GO:0048813 P dendrite morphogenesis
FPKM:4.60 TPM:2.05
1182 A_BomaMSG_c11291_g1_i1
1049bp
protein_SMG8_[Bombyx_mori]
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003674 F molecular_function
GO:0005575 C cellular_component
FPKM:2.32 TPM:1.04
1183 A_BomaMSG_c11292_g1_i1
279bp
FPKM:1.04 TPM:0.46
1184 A_BomaMSG_c11292_g2_i1
504bp
FPKM:6.46 TPM:2.89
1185 A_BomaMSG_c11293_g1_i1
517bp
intersectin-1_isoform_X5_[Bombyx_mori]
FPKM:1.83 TPM:0.82
1186 A_BomaMSG_c11294_g1_i1
392bp
FPKM:4.72 TPM:2.11
1187 A_BomaMSG_c11295_g1_i1
241bp
ankyrin_repeat_and_sterile_alpha_motif_domain-containing_protein_1B_isoform_X2_[Bombyx_mori]
FPKM:2.92 TPM:1.30
1188 A_BomaMSG_c11296_g1_i1
1436bp
purine_nucleoside_phosphorylase_isoform_X1_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004731 F purine-nucleoside phosphorylase activity
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0006139 P nucleobase-containing compound metabolic process
GO:0009116 P nucleoside metabolic process
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:0016763 F pentosyltransferase activity
GO:0043101 P purine-containing compound salvage
FPKM:24.15 TPM:10.79
1189 A_BomaMSG_c11296_g1_i2
1418bp
purine_nucleoside_phosphorylase_isoform_X2_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004731 F purine-nucleoside phosphorylase activity
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0006139 P nucleobase-containing compound metabolic process
GO:0009116 P nucleoside metabolic process
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:0016763 F pentosyltransferase activity
GO:0043101 P purine-containing compound salvage
FPKM:19.63 TPM:8.77
1190 A_BomaMSG_c11297_g1_i1
359bp
uncharacterized_protein_LOC101736599_[Bombyx_mori]
FPKM:2.57 TPM:1.15
1191 A_BomaMSG_c11298_g1_i1
211bp
transient_receptor_potential_cation_channel_trpm_isoform_X8_[Bombyx_mori]
GO:0005216 F ion channel activity
GO:0005261 F cation channel activity
GO:0006810 P transport
GO:0006811 P ion transport
GO:0007005 P mitochondrion organization
GO:0010960 P magnesium ion homeostasis
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016049 P cell growth
GO:0034220 P ion transmembrane transport
GO:0034703 C cation channel complex
GO:0043052 P thermotaxis
GO:0046873 F metal ion transmembrane transporter activity
GO:0051262 P protein tetramerization
GO:0055069 P zinc ion homeostasis
GO:0055085 P transmembrane transport
GO:0070838 P metal ion transport
GO:0097682 F intracellular phosphatidylinositol-3,5-bisphosphate-sensitive cation channel activity
GO:0098655 P cation transmembrane transport
FPKM:4.22 TPM:1.89
1192 A_BomaMSG_c11299_g1_i1
1350bp
protein_YIPF2_[Bombyx_mori]
GO:0002230 P positive regulation of defense response to virus by host
GO:0003674 F molecular_function
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030133 C transport vesicle
GO:0098779 P positive regulation of mitophagy in response to mitochondrial depolarization
GO:0098792 P xenophagy
FPKM:37.32 TPM:16.68
1193 A_BomaMSG_c1129_g1_i1
246bp
zinc_finger_protein_Xfin_isoform_X1_[Bombyx_mori]
FPKM:5.54 TPM:2.48
1194 A_BomaMSG_c112_g1_i1
216bp
FPKM:6.88 TPM:3.08
1195 A_BomaMSG_c11301_g1_i1
371bp
FPKM:6.08 TPM:2.72
1196 A_BomaMSG_c11302_g1_i1
362bp
TIA1_cytotoxic_granule-associated_RNA_binding_protein_isoform_X2_[Bombyx_mori]
FPKM:13.04 TPM:5.83
1197 A_BomaMSG_c11302_g1_i2
1402bp
TIA1_cytotoxic_granule-associated_RNA_binding_protein_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005764 C lysosome
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006915 P apoptotic process
GO:0006952 P defense response
GO:0007281 P germ cell development
GO:0008284 P positive regulation of cell population proliferation
GO:0008543 P fibroblast growth factor receptor signaling pathway
GO:0010494 C cytoplasmic stress granule
GO:0017091 F mRNA 3'-UTR AU-rich region binding
GO:0017145 P stem cell division
GO:0030529 C ribonucleoprotein complex
GO:0044822 F RNA binding
GO:0070062 C extracellular exosome
FPKM:13.40 TPM:5.99
1198 A_BomaMSG_c11302_g1_i3
1420bp
TIA-1_homologue_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005764 C lysosome
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006915 P apoptotic process
GO:0006952 P defense response
GO:0007281 P germ cell development
GO:0008284 P positive regulation of cell population proliferation
GO:0008543 P fibroblast growth factor receptor signaling pathway
GO:0010494 C cytoplasmic stress granule
GO:0017091 F mRNA 3'-UTR AU-rich region binding
GO:0017145 P stem cell division
GO:0030529 C ribonucleoprotein complex
GO:0044822 F RNA binding
GO:0070062 C extracellular exosome
FPKM:63.76 TPM:28.49
1199 A_BomaMSG_c11303_g1_i1
467bp
uncharacterized_protein_LOC101742357_isoform_X2_[Bombyx_mori]
FPKM:2.33 TPM:1.04
1200 A_BomaMSG_c11304_g1_i1
953bp
ATP_synthase_lipid-binding_protein,_mitochondrial_[Bombyx_mori]
GO:0005739 C mitochondrion
GO:0006810 P transport
GO:0006811 P ion transport
GO:0008289 F lipid binding
GO:0015078 F proton transmembrane transporter activity
GO:0015986 P ATP synthesis coupled proton transport
GO:0015991 P proton transmembrane transport
GO:0015992 P proton transmembrane transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0031966 C mitochondrial membrane
GO:0033177 C proton-transporting two-sector ATPase complex, proton-transporting domain
GO:0045263 C proton-transporting ATP synthase complex, coupling factor F(o)
FPKM:189.32 TPM:84.60
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