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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1201 A_BomaMSG_c11305_g1_i1
965bp
proteasome_alpha_3_subunit_[Bombyx_mori]
GO:0000502 C proteasome complex
GO:0002479 P antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent
GO:0004175 F endopeptidase activity
GO:0004298 F threonine-type endopeptidase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005839 C proteasome core complex
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0008233 F peptidase activity
GO:0016787 F hydrolase activity
GO:0019773 C proteasome core complex, alpha-subunit complex
GO:0051603 P proteolysis involved in cellular protein catabolic process
GO:0052548 P regulation of endopeptidase activity
GO:0070062 C extracellular exosome
FPKM:39.24 TPM:17.54
1202 A_BomaMSG_c11306_g1_i1
392bp
probable_phospholipid-transporting_ATPase_IA_isoform_X5_[Bombyx_mori]
FPKM:5.28 TPM:2.36
1203 A_BomaMSG_c11307_g1_i1
213bp
uncharacterized_protein_LOC110385512,_partial_[Bombyx_mori]
FPKM:4.10 TPM:1.83
1204 A_BomaMSG_c11308_g1_i1
530bp
uncharacterized_protein_LOC101743599_[Bombyx_mori]
FPKM:0.00 TPM:0.00
1205 A_BomaMSG_c11308_g1_i2
665bp
uncharacterized_protein_LOC101743599_[Bombyx_mori]
FPKM:2.88 TPM:1.29
1206 A_BomaMSG_c11309_g1_i1
1171bp
histidine-rich_membrane_protein_KE4_homolog_2_[Bombyx_mori]
GO:0005385 F zinc ion transmembrane transporter activity
GO:0005623 C obsolete cell
GO:0006810 P transport
GO:0006882 P cellular zinc ion homeostasis
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030001 P metal ion transport
GO:0046873 F metal ion transmembrane transporter activity
GO:0055085 P transmembrane transport
GO:0071577 P zinc ion transmembrane transport
FPKM:31.92 TPM:14.26
1207 A_BomaMSG_c1130_g1_i1
294bp
FPKM:1.40 TPM:0.62
1208 A_BomaMSG_c11310_g1_i1
693bp
protein_5NUC_isoform_X1_[Bombyx_mori]
FPKM:3.22 TPM:1.44
1209 A_BomaMSG_c11311_g1_i1
933bp
leucine-rich_repeat-containing_protein_24_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0007409 P axonogenesis
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0051965 P positive regulation of synapse assembly
FPKM:2.92 TPM:1.31
1210 A_BomaMSG_c11313_g1_i1
474bp
FPKM:9.55 TPM:4.27
1211 A_BomaMSG_c11314_g1_i1
236bp
FPKM:2.31 TPM:1.03
1212 A_BomaMSG_c11314_g2_i1
206bp
FPKM:1.14 TPM:0.51
1213 A_BomaMSG_c11315_g1_i1
404bp
ribosomal_protein_S8_[Bombyx_mori]
GO:0003735 F structural constituent of ribosome
GO:0005622 C intracellular anatomical structure
GO:0005840 C ribosome
GO:0006412 P translation
GO:0030529 C ribonucleoprotein complex
FPKM:4.77 TPM:2.13
1214 A_BomaMSG_c11316_g1_i1
1162bp
coiled-coil_domain-containing_protein_174_[Bombyx_mori]
FPKM:5.26 TPM:2.35
1215 A_BomaMSG_c11317_g1_i1
505bp
uncharacterized_protein_LOC105841537_[Bombyx_mori]
FPKM:2.46 TPM:1.10
1216 A_BomaMSG_c11318_g1_i1
510bp
DNA_polymerase_epsilon_subunit_4_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0003677 F DNA binding
GO:0003887 F DNA-directed DNA polymerase activity
GO:0005634 C nucleus
GO:0005671 C obsolete Ada2/Gcn5/Ada3 transcription activator complex
GO:0008622 C epsilon DNA polymerase complex
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0043966 P histone H3 acetylation
GO:0046982 F protein heterodimerization activity
GO:0071897 P DNA biosynthetic process
FPKM:28.60 TPM:12.78
1217 A_BomaMSG_c1131_g1_i1
473bp
male-specific_lethal_3_[Bombyx_mori]
GO:0005634 C nucleus
GO:0006338 P chromatin remodeling
GO:0006342 P heterochromatin assembly
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0016568 P chromatin organization
GO:0016575 P histone deacetylation
GO:0035267 C NuA4 histone acetyltransferase complex
GO:0043967 P histone H4 acetylation
GO:0043968 P histone H2A acetylation
FPKM:1.15 TPM:0.52
1218 A_BomaMSG_c1131_g1_i2
497bp
male-specific_lethal_3_isoform_X1_[Bombyx_mori]
GO:0005634 C nucleus
GO:0006338 P chromatin remodeling
GO:0006342 P heterochromatin assembly
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0016568 P chromatin organization
GO:0016575 P histone deacetylation
GO:0035267 C NuA4 histone acetyltransferase complex
GO:0043967 P histone H4 acetylation
GO:0043968 P histone H2A acetylation
FPKM:0.48 TPM:0.21
1219 A_BomaMSG_c11320_g1_i1
958bp
FPKM:4.33 TPM:1.94
1220 A_BomaMSG_c11321_g1_i1
204bp
FPKM:2.34 TPM:1.05
1221 A_BomaMSG_c11324_g1_i1
322bp
glucose_dehydrogenase_[FAD,_quinone]_[Bombyx_mori]
GO:0004344 F glucose dehydrogenase activity
GO:0005576 C extracellular region
GO:0006006 P glucose metabolic process
GO:0008364 P pupal chitin-based cuticle development
GO:0016491 F oxidoreductase activity
GO:0016614 F oxidoreductase activity, acting on CH-OH group of donors
GO:0019233 P sensory perception of pain
GO:0042335 P cuticle development
GO:0046693 P sperm storage
GO:0050660 F flavin adenine dinucleotide binding
GO:0055114 P obsolete oxidation-reduction process
FPKM:1.07 TPM:0.48
1222 A_BomaMSG_c11324_g1_i2
486bp
glucose_dehydrogenase_[FAD,_quinone]_[Bombyx_mori]
GO:0004344 F glucose dehydrogenase activity
GO:0005576 C extracellular region
GO:0006006 P glucose metabolic process
GO:0008364 P pupal chitin-based cuticle development
GO:0016491 F oxidoreductase activity
GO:0016614 F oxidoreductase activity, acting on CH-OH group of donors
GO:0019233 P sensory perception of pain
GO:0042335 P cuticle development
GO:0046693 P sperm storage
GO:0050660 F flavin adenine dinucleotide binding
GO:0055114 P obsolete oxidation-reduction process
FPKM:0.45 TPM:0.20
1223 A_BomaMSG_c11325_g1_i1
594bp
ribonuclease_3_[Bombyx_mori]
GO:0001530 F lipopolysaccharide binding
GO:0003723 F RNA binding
GO:0003725 F double-stranded RNA binding
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004521 F endoribonuclease activity
GO:0004525 F ribonuclease III activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006396 P RNA processing
GO:0010468 P regulation of gene expression
GO:0010586 P miRNA metabolic process
GO:0010628 P positive regulation of gene expression
GO:0016075 P rRNA catabolic process
GO:0016787 F hydrolase activity
GO:0030422 P production of siRNA involved in RNA interference
GO:0031053 P primary miRNA processing
GO:0031054 P pre-miRNA processing
GO:0042254 P ribosome biogenesis
GO:0042803 F protein homodimerization activity
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
GO:0050829 P defense response to Gram-negative bacterium
GO:0050830 P defense response to Gram-positive bacterium
GO:0070877 C microprocessor complex
GO:0090501 P RNA phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
GO:2000628 P regulation of miRNA metabolic process
FPKM:1.35 TPM:0.61
1224 A_BomaMSG_c11325_g1_i2
299bp
ribonuclease_3_[Bombyx_mori]
GO:0001530 F lipopolysaccharide binding
GO:0003723 F RNA binding
GO:0003725 F double-stranded RNA binding
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004521 F endoribonuclease activity
GO:0004525 F ribonuclease III activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006396 P RNA processing
GO:0010468 P regulation of gene expression
GO:0010586 P miRNA metabolic process
GO:0010628 P positive regulation of gene expression
GO:0016075 P rRNA catabolic process
GO:0016787 F hydrolase activity
GO:0030422 P production of siRNA involved in RNA interference
GO:0031053 P primary miRNA processing
GO:0031054 P pre-miRNA processing
GO:0042254 P ribosome biogenesis
GO:0042803 F protein homodimerization activity
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
GO:0050829 P defense response to Gram-negative bacterium
GO:0050830 P defense response to Gram-positive bacterium
GO:0070877 C microprocessor complex
GO:0090501 P RNA phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
GO:2000628 P regulation of miRNA metabolic process
FPKM:2.28 TPM:1.02
1225 A_BomaMSG_c11326_g1_i1
297bp
FPKM:4.56 TPM:2.04
1226 A_BomaMSG_c11327_g1_i1
220bp
FPKM:5.59 TPM:2.50
1227 A_BomaMSG_c11328_g1_i1
231bp
FPKM:3.26 TPM:1.46
1228 A_BomaMSG_c11329_g1_i1
286bp
FPKM:43.37 TPM:19.38
1229 A_BomaMSG_c1132_g1_i1
306bp
FPKM:1.29 TPM:0.58
1230 A_BomaMSG_c11330_g1_i1
749bp
phosphofurin_acidic_cluster_sorting_protein_1_isoform_X4_[Bombyx_mori]
GO:0005794 C Golgi apparatus
GO:0032092 P positive regulation of protein binding
GO:0034613 P cellular protein localization
GO:0044325 F transmembrane transporter binding
GO:0048471 C perinuclear region of cytoplasm
GO:0072661 P protein localization to plasma membrane
FPKM:2.28 TPM:1.02
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