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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1141 A_BomaMSG_c11254_g1_i1
629bp
vacuolar_protein_sorting-associated_protein_33A_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0005776 C autophagosome
GO:0006810 P transport
GO:0006904 P vesicle docking involved in exocytosis
GO:0008150 P biological_process
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016023 C cytoplasmic vesicle
GO:0016192 P vesicle-mediated transport
GO:0030136 C clathrin-coated vesicle
GO:0031410 C cytoplasmic vesicle
GO:0031902 C late endosome membrane
GO:0032403 F protein-containing complex binding
FPKM:4.08 TPM:1.82
1142 A_BomaMSG_c11255_g1_i1
584bp
uncharacterized_protein_LOC101737032_[Bombyx_mori]
FPKM:4.19 TPM:1.87
1143 A_BomaMSG_c11256_g1_i1
498bp
DNA_repair_and_recombination_protein_RAD54-like_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000711 P meiotic DNA repair synthesis
GO:0000724 P double-strand break repair via homologous recombination
GO:0003674 F molecular_function
GO:0003677 F DNA binding
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006302 P double-strand break repair
GO:0006310 P DNA recombination
GO:0006338 P chromatin remodeling
GO:0006417 P regulation of translation
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0007131 P reciprocal meiotic recombination
GO:0008298 P intracellular mRNA localization
GO:0010212 P response to ionizing radiation
GO:0016787 F hydrolase activity
GO:0016817 F hydrolase activity, acting on acid anhydrides
GO:0030261 P chromosome condensation
GO:0043150 P DNA synthesis involved in double-strand break repair via homologous recombination
GO:0045003 P double-strand break repair via synthesis-dependent strand annealing
GO:0046843 P dorsal appendage formation
GO:0048477 P oogenesis
GO:0051301 P cell division
GO:0051321 P meiotic cell cycle
FPKM:0.00 TPM:0.00
1144 A_BomaMSG_c11256_g1_i2
905bp
DNA_repair_and_recombination_protein_RAD54-like_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000711 P meiotic DNA repair synthesis
GO:0000724 P double-strand break repair via homologous recombination
GO:0003674 F molecular_function
GO:0003677 F DNA binding
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006338 P chromatin remodeling
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0010212 P response to ionizing radiation
GO:0016787 F hydrolase activity
GO:0016817 F hydrolase activity, acting on acid anhydrides
GO:0043150 P DNA synthesis involved in double-strand break repair via homologous recombination
GO:0051301 P cell division
GO:0051321 P meiotic cell cycle
FPKM:4.10 TPM:1.83
1145 A_BomaMSG_c11258_g1_i1
755bp
ankyrin_repeat_and_sterile_alpha_motif_domain-containing_protein_1B_isoform_X1_[Bombyx_mori]
FPKM:3.45 TPM:1.54
1146 A_BomaMSG_c11259_g1_i1
229bp
FPKM:3.33 TPM:1.49
1147 A_BomaMSG_c1125_g1_i1
662bp
tyrosine-protein_phosphatase_non-receptor_type_21_[Bombyx_mori]
GO:0001946 P lymphangiogenesis
GO:0003712 F transcription coregulator activity
GO:0004721 F phosphoprotein phosphatase activity
GO:0004725 F protein tyrosine phosphatase activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006470 P protein dephosphorylation
GO:0008285 P negative regulation of cell population proliferation
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0016791 F phosphatase activity
GO:0030971 F receptor tyrosine kinase binding
GO:0035335 P peptidyl-tyrosine dephosphorylation
GO:0046825 P regulation of protein export from nucleus
FPKM:1.84 TPM:0.82
1148 A_BomaMSG_c11260_g1_i1
365bp
FPKM:2.20 TPM:0.98
1149 A_BomaMSG_c11260_g1_i2
336bp
FPKM:1.43 TPM:0.64
1150 A_BomaMSG_c11261_g1_i1
461bp
zinc_finger_protein_35_isoform_X3_[Bombyx_mori]
FPKM:2.60 TPM:1.16
1151 A_BomaMSG_c11262_g1_i1
379bp
AT-rich_interactive_domain-containing_protein_5B_isoform_X3_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003713 F transcription coactivator activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0044212 F transcription cis-regulatory region binding
GO:0051091 P positive regulation of DNA-binding transcription factor activity
GO:0060612 P adipose tissue development
FPKM:3.23 TPM:1.44
1152 A_BomaMSG_c11263_g1_i1
534bp
FPKM:2.41 TPM:1.08
1153 A_BomaMSG_c11264_g1_i1
671bp
rotamase_Pin1_[Bombyx_mori]
GO:0000413 P protein peptidyl-prolyl isomerization
GO:0003755 F peptidyl-prolyl cis-trans isomerase activity
GO:0005634 C nucleus
GO:0007173 P epidermal growth factor receptor signaling pathway
GO:0008152 P metabolic process
GO:0016853 F isomerase activity
FPKM:30.59 TPM:13.67
1154 A_BomaMSG_c11264_g1_i2
728bp
rotamase_Pin1_[Bombyx_mori]
GO:0000413 P protein peptidyl-prolyl isomerization
GO:0003755 F peptidyl-prolyl cis-trans isomerase activity
GO:0005634 C nucleus
GO:0007173 P epidermal growth factor receptor signaling pathway
GO:0008152 P metabolic process
GO:0016853 F isomerase activity
FPKM:10.98 TPM:4.91
1155 A_BomaMSG_c11265_g1_i1
287bp
FPKM:3.91 TPM:1.75
1156 A_BomaMSG_c11265_g2_i1
354bp
FPKM:4.94 TPM:2.21
1157 A_BomaMSG_c11266_g1_i1
326bp
FPKM:3.05 TPM:1.36
1158 A_BomaMSG_c11267_g1_i1
1382bp
phosphoglucomutase-2_[Bombyx_mori]
GO:0005829 C cytosol
GO:0005975 P carbohydrate metabolic process
GO:0006006 P glucose metabolic process
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0016853 F isomerase activity
GO:0016868 F intramolecular transferase activity, phosphotransferases
GO:0046872 F metal ion binding
GO:0047933 F glucose-1,6-bisphosphate synthase activity
GO:0071704 P organic substance metabolic process
FPKM:3.28 TPM:1.47
1159 A_BomaMSG_c11268_g1_i1
564bp
ankyrin_repeat_domain-containing_protein_12_[Bombyx_mori]
FPKM:0.00 TPM:0.00
1160 A_BomaMSG_c11268_g1_i2
795bp
ankyrin_repeat_domain-containing_protein_12_[Bombyx_mori]
FPKM:4.70 TPM:2.10
1161 A_BomaMSG_c11269_g1_i1
1205bp
FPKM:36.03 TPM:16.10
1162 A_BomaMSG_c11269_g1_i2
428bp
FPKM:0.00 TPM:0.00
1163 A_BomaMSG_c11270_g1_i1
383bp
rho_guanine_nucleotide_exchange_factor_18_[Bombyx_mori]
FPKM:2.31 TPM:1.03
1164 A_BomaMSG_c11271_g1_i1
620bp
serine/threonine-protein_kinase_N_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004697 F protein kinase C activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006468 P protein phosphorylation
GO:0007049 P cell cycle
GO:0007155 P cell adhesion
GO:0007165 P signal transduction
GO:0007275 P multicellular organism development
GO:0007391 P dorsal closure
GO:0007472 P wing disc morphogenesis
GO:0016020 C membrane
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0018105 P peptidyl-serine phosphorylation
GO:0030027 C lamellipodium
GO:0030054 C cell junction
GO:0030496 C midbody
GO:0031532 P actin cytoskeleton reorganization
GO:0032154 C cleavage furrow
GO:0035556 P intracellular signal transduction
GO:0042995 C cell projection
GO:0046777 P protein autophosphorylation
GO:0051301 P cell division
GO:0090303 P positive regulation of wound healing
FPKM:4.44 TPM:1.98
1165 A_BomaMSG_c11272_g1_i1
373bp
tyrosine-protein_phosphatase_[Bombyx_mori]
FPKM:3.92 TPM:1.75
1166 A_BomaMSG_c11273_g1_i1
1149bp
alpha-tocopherol_transfer_protein-like_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005215 F transporter activity
GO:0005622 C intracellular anatomical structure
GO:0006810 P transport
GO:0008150 P biological_process
GO:0016020 C membrane
FPKM:15.13 TPM:6.76
1167 A_BomaMSG_c11273_g1_i2
1073bp
alpha-tocopherol_transfer_protein-like_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005215 F transporter activity
GO:0005622 C intracellular anatomical structure
GO:0006810 P transport
GO:0008150 P biological_process
GO:0016020 C membrane
FPKM:18.06 TPM:8.07
1168 A_BomaMSG_c11274_g1_i1
721bp
uncharacterized_protein_LOC101740740_[Bombyx_mori]
GO:0005576 C extracellular region
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005911 C cell-cell junction
GO:0007155 P cell adhesion
FPKM:2.00 TPM:0.90
1169 A_BomaMSG_c11275_g1_i1
382bp
FPKM:7.24 TPM:3.24
1170 A_BomaMSG_c11276_g1_i1
664bp
zinc_finger_FYVE_domain-containing_protein_26_homolog_[Bombyx_mori]
FPKM:2.23 TPM:1.00
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