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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
91 A_BomoOtmSK_comp10040_c0_seq2
1514bp
 hemK_methyltransferase_family_member_2_isoform_X1_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0005515 F protein binding
GO:0005829 C cytosol
GO:0006415 P translational termination
GO:0006479 P protein methylation
GO:0008168 F methyltransferase activity
GO:0008276 F protein methyltransferase activity
GO:0016740 F transferase activity
GO:0030307 P positive regulation of cell growth
GO:0032259 P methylation
GO:0043234 C protein-containing complex
FPKM:1.19 TPM:1.29
92 A_BomoOtmSK_comp10041_c0_seq1
443bp
 THO_complex_subunit_7_homolog_isoform_X2_[Bombyx_mori]
GO:0000445 C THO complex part of transcription export complex
GO:0000446 C nucleoplasmic THO complex
GO:0000781 C chromosome, telomeric region
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006368 P transcription elongation from RNA polymerase II promoter
GO:0006397 P mRNA processing
GO:0006406 P mRNA export from nucleus
GO:0006810 P transport
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
GO:0051028 P mRNA transport
FPKM:2.71 TPM:2.93
93 A_BomoOtmSK_comp10041_c0_seq2
978bp
 THO_complex_subunit_7_homolog_isoform_X1_[Bombyx_mori]
GO:0000445 C THO complex part of transcription export complex
GO:0000446 C nucleoplasmic THO complex
GO:0000781 C chromosome, telomeric region
GO:0003676 F nucleic acid binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006368 P transcription elongation from RNA polymerase II promoter
GO:0006397 P mRNA processing
GO:0006406 P mRNA export from nucleus
GO:0016607 C nuclear speck
FPKM:7.47 TPM:8.06
94 A_BomoOtmSK_comp10042_c0_seq1
908bp
 hypothetical_protein_KGM_213223_[Danaus_plexippus_plexippus]
FPKM:10.10 TPM:10.89
95 A_BomoOtmSK_comp1004349_c0_seq1
270bp
FPKM:1.43 TPM:1.54
96 A_BomoOtmSK_comp100435_c0_seq1
339bp
FPKM:5.75 TPM:6.20
97 A_BomoOtmSK_comp10043_c0_seq1
567bp
FPKM:8.98 TPM:9.68
98 A_BomoOtmSK_comp1004441_c0_seq1
252bp
FPKM:0.59 TPM:0.63
99 A_BomoOtmSK_comp1004491_c0_seq1
203bp
 uncharacterized_protein_LOC101746412_isoform_X1_[Bombyx_mori]
FPKM:0.00 TPM:0.00
100 A_BomoOtmSK_comp10044_c0_seq1
601bp
 reverse_transcriptase_-_silkworm_transposon_Pao
FPKM:1.86 TPM:2.00
101 A_BomoOtmSK_comp100455_c0_seq1
833bp
 dnaJ_homolog_subfamily_C_member_16_precursor_[Bombyx_mori]
GO:0005575 C cellular_component
GO:0005623 C obsolete cell
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0045454 P cell redox homeostasis
FPKM:3.19 TPM:3.44
102 A_BomoOtmSK_comp10045_c0_seq1
229bp
 cytochrome_P450,_partial_[Bombyx_mori]
FPKM:0.04 TPM:0.05
103 A_BomoOtmSK_comp10045_c0_seq2
483bp
 cytochrome_P450,_partial_[Bombyx_mori]
FPKM:1.00 TPM:1.07
104 A_BomoOtmSK_comp10046_c0_seq1
944bp
FPKM:3.63 TPM:3.91
105 A_BomoOtmSK_comp100475_c0_seq1
633bp
FPKM:4.79 TPM:5.16
106 A_BomoOtmSK_comp10047_c0_seq1
567bp
FPKM:4.60 TPM:4.96
107 A_BomoOtmSK_comp10047_c0_seq2
329bp
FPKM:2.04 TPM:2.20
108 A_BomoOtmSK_comp10047_c1_seq1
601bp
FPKM:1.34 TPM:1.45
109 A_BomoOtmSK_comp1004801_c0_seq1
207bp
FPKM:0.00 TPM:0.00
110 A_BomoOtmSK_comp100482_c0_seq1
576bp
FPKM:4.38 TPM:4.73
111 A_BomoOtmSK_comp10048_c0_seq1
1060bp
FPKM:5.22 TPM:5.63
112 A_BomoOtmSK_comp10048_c0_seq2
275bp
 pyridoxal-dependent_decarboxylase_domain-containing_protein_1_isoform_X3_[Bombyx_mori]
FPKM:4.53 TPM:4.89
113 A_BomoOtmSK_comp1004988_c0_seq1
222bp
 Gag_polyprotein_[Operophtera_brumata]
FPKM:2.73 TPM:2.95
114 A_BomoOtmSK_comp10049_c0_seq1
2466bp
 chaoptin_[Bombyx_mori]
GO:0005886 C plasma membrane
GO:0007155 P cell adhesion
GO:0007156 P homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007601 P visual perception
GO:0016020 C membrane
GO:0016028 C rhabdomere
GO:0032528 P microvillus organization
GO:0035996 C rhabdomere microvillus
GO:0042051 P compound eye photoreceptor development
GO:0042052 P rhabdomere development
GO:0046658 C anchored component of plasma membrane
GO:0050896 P response to stimulus
FPKM:1.70 TPM:1.84
115 A_BomoOtmSK_comp10049_c0_seq2
790bp
 chaoptin_[Bombyx_mori]
GO:0005886 C plasma membrane
GO:0007155 P cell adhesion
GO:0007156 P homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007601 P visual perception
GO:0016020 C membrane
GO:0016028 C rhabdomere
GO:0032528 P microvillus organization
GO:0035996 C rhabdomere microvillus
GO:0042051 P compound eye photoreceptor development
GO:0042052 P rhabdomere development
GO:0046658 C anchored component of plasma membrane
GO:0050896 P response to stimulus
FPKM:0.00 TPM:0.00
116 A_BomoOtmSK_comp10050_c1_seq1
229bp
FPKM:0.81 TPM:0.87
117 A_BomoOtmSK_comp10051_c0_seq1
1640bp
 WW_domain-binding_protein_2_isoform_X1_[Bombyx_mori]
GO:0005515 F protein binding
FPKM:28.09 TPM:30.28
118 A_BomoOtmSK_comp10052_c0_seq1
1913bp
 nicotinamide_riboside_kinase_2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005622 C intracellular anatomical structure
GO:0009435 P NAD biosynthetic process
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0019363 P pyridine nucleotide biosynthetic process
GO:0045662 P negative regulation of myoblast differentiation
GO:0046872 F metal ion binding
GO:0050262 F ribosylnicotinamide kinase activity
FPKM:21.07 TPM:22.71
119 A_BomoOtmSK_comp10053_c0_seq1
599bp
FPKM:3.73 TPM:4.02
120 A_BomoOtmSK_comp10054_c0_seq1
1728bp
FPKM:8.25 TPM:8.90
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