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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
121 A_BomoOtmSK_comp1005509_c0_seq1
202bp
FPKM:0.00 TPM:0.00
122 A_BomoOtmSK_comp10055_c0_seq1
1716bp
 kanadaptin_isoform_X3_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0043231 C intracellular membrane-bounded organelle
FPKM:8.94 TPM:9.63
123 A_BomoOtmSK_comp10055_c0_seq2
324bp
 kanadaptin_isoform_X3_[Bombyx_mori]
FPKM:1.57 TPM:1.69
124 A_BomoOtmSK_comp10055_c0_seq3
325bp
 kanadaptin_isoform_X2_[Bombyx_mori]
FPKM:0.00 TPM:0.00
125 A_BomoOtmSK_comp10055_c0_seq4
441bp
 kanadaptin_isoform_X3_[Bombyx_mori]
FPKM:0.00 TPM:0.00
126 A_BomoOtmSK_comp10055_c0_seq5
440bp
 kanadaptin_isoform_X3_[Bombyx_mori]
FPKM:3.15 TPM:3.39
127 A_BomoOtmSK_comp10056_c0_seq1
1640bp
 uncharacterized_protein_LOC101738865_isoform_X2_[Bombyx_mori]
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0006915 P apoptotic process
GO:0007275 P multicellular organism development
GO:0008270 F zinc ion binding
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0046872 F metal ion binding
GO:0061630 F ubiquitin protein ligase activity
FPKM:1.90 TPM:2.05
128 A_BomoOtmSK_comp1005702_c0_seq1
201bp
FPKM:2.79 TPM:3.00
129 A_BomoOtmSK_comp10057_c0_seq1
405bp
 uncharacterized_protein_LOC101744544_[Bombyx_mori]
FPKM:1.93 TPM:2.09
130 A_BomoOtmSK_comp100584_c0_seq1
1348bp
 histone_deacetylase_complex_subunit_SAP30_homolog_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
FPKM:3.23 TPM:3.48
131 A_BomoOtmSK_comp10058_c0_seq1
2318bp
 phosphatidylinositol_4-phosphate_3-kinase_C2_domain-containing_subunit_alpha_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0005942 C phosphatidylinositol 3-kinase complex
GO:0006661 P phosphatidylinositol biosynthetic process
GO:0006887 P exocytosis
GO:0006897 P endocytosis
GO:0007173 P epidermal growth factor receptor signaling pathway
GO:0008286 P insulin receptor signaling pathway
GO:0014829 P vascular associated smooth muscle contraction
GO:0016020 C membrane
GO:0016301 F kinase activity
GO:0016303 F 1-phosphatidylinositol-3-kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0016773 F phosphotransferase activity, alcohol group as acceptor
GO:0030136 C clathrin-coated vesicle
GO:0031410 C cytoplasmic vesicle
GO:0031982 C vesicle
GO:0035004 F phosphatidylinositol 3-kinase activity
GO:0035005 F 1-phosphatidylinositol-4-phosphate 3-kinase activity
GO:0035091 F phosphatidylinositol binding
GO:0036092 P phosphatidylinositol-3-phosphate biosynthetic process
GO:0046854 P phosphatidylinositol phosphate biosynthetic process
GO:0048008 P platelet-derived growth factor receptor signaling pathway
GO:0048015 P phosphatidylinositol-mediated signaling
GO:0048268 P clathrin coat assembly
GO:0070062 C extracellular exosome
FPKM:1.16 TPM:1.25
132 A_BomoOtmSK_comp10058_c0_seq2
2255bp
 phosphatidylinositol_4-phosphate_3-kinase_C2_domain-containing_subunit_alpha_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0005942 C phosphatidylinositol 3-kinase complex
GO:0006661 P phosphatidylinositol biosynthetic process
GO:0006887 P exocytosis
GO:0006897 P endocytosis
GO:0007173 P epidermal growth factor receptor signaling pathway
GO:0008286 P insulin receptor signaling pathway
GO:0014829 P vascular associated smooth muscle contraction
GO:0016020 C membrane
GO:0016301 F kinase activity
GO:0016303 F 1-phosphatidylinositol-3-kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0016773 F phosphotransferase activity, alcohol group as acceptor
GO:0030136 C clathrin-coated vesicle
GO:0031410 C cytoplasmic vesicle
GO:0031982 C vesicle
GO:0035004 F phosphatidylinositol 3-kinase activity
GO:0035005 F 1-phosphatidylinositol-4-phosphate 3-kinase activity
GO:0035091 F phosphatidylinositol binding
GO:0036092 P phosphatidylinositol-3-phosphate biosynthetic process
GO:0046854 P phosphatidylinositol phosphate biosynthetic process
GO:0048008 P platelet-derived growth factor receptor signaling pathway
GO:0048015 P phosphatidylinositol-mediated signaling
GO:0048268 P clathrin coat assembly
GO:0070062 C extracellular exosome
FPKM:1.66 TPM:1.79
133 A_BomoOtmSK_comp10059_c0_seq1
2438bp
 scavenger_receptor_class_B_member_1_[Bombyx_mori]
GO:0001530 F lipopolysaccharide binding
GO:0001875 F lipopolysaccharide immune receptor activity
GO:0001935 P endothelial cell proliferation
GO:0005737 C cytoplasm
GO:0005765 C lysosomal membrane
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0005901 C caveola
GO:0006707 P cholesterol catabolic process
GO:0006898 P receptor-mediated endocytosis
GO:0008035 F high-density lipoprotein particle binding
GO:0009986 C cell surface
GO:0010867 P positive regulation of triglyceride biosynthetic process
GO:0010886 P positive regulation of cholesterol storage
GO:0010899 P regulation of phosphatidylcholine catabolic process
GO:0015914 P phospholipid transport
GO:0015920 P lipopolysaccharide transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030169 F low-density lipoprotein particle binding
GO:0030301 P cholesterol transport
GO:0031663 P lipopolysaccharide-mediated signaling pathway
GO:0032497 P detection of lipopolysaccharide
GO:0033344 P cholesterol efflux
GO:0034185 F apolipoprotein binding
GO:0034186 F apolipoprotein A-I binding
GO:0034375 P high-density lipoprotein particle remodeling
GO:0034383 P low-density lipoprotein particle clearance
GO:0034384 P high-density lipoprotein particle clearance
GO:0035461 P vitamin transmembrane transport
GO:0042632 P cholesterol homeostasis
GO:0043231 C intracellular membrane-bounded organelle
GO:0043534 P blood vessel endothelial cell migration
GO:0043654 P recognition of apoptotic cell
GO:0043691 P reverse cholesterol transport
GO:0044406 P adhesion of symbiont to host
GO:0050892 P intestinal absorption
GO:0051000 P positive regulation of nitric-oxide synthase activity
GO:0070062 C extracellular exosome
GO:0070328 P triglyceride homeostasis
GO:0070506 F high-density lipoprotein particle receptor activity
GO:0070508 P cholesterol import
FPKM:0.73 TPM:0.78
134 A_BomoOtmSK_comp10059_c0_seq2
2406bp
 scavenger_receptor_class_B_member_1_[Bombyx_mori]
GO:0001530 F lipopolysaccharide binding
GO:0001875 F lipopolysaccharide immune receptor activity
GO:0001935 P endothelial cell proliferation
GO:0005737 C cytoplasm
GO:0005765 C lysosomal membrane
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0005901 C caveola
GO:0006707 P cholesterol catabolic process
GO:0006898 P receptor-mediated endocytosis
GO:0008035 F high-density lipoprotein particle binding
GO:0009986 C cell surface
GO:0010867 P positive regulation of triglyceride biosynthetic process
GO:0010886 P positive regulation of cholesterol storage
GO:0010899 P regulation of phosphatidylcholine catabolic process
GO:0015914 P phospholipid transport
GO:0015920 P lipopolysaccharide transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030169 F low-density lipoprotein particle binding
GO:0030301 P cholesterol transport
GO:0031663 P lipopolysaccharide-mediated signaling pathway
GO:0032497 P detection of lipopolysaccharide
GO:0033344 P cholesterol efflux
GO:0034185 F apolipoprotein binding
GO:0034186 F apolipoprotein A-I binding
GO:0034375 P high-density lipoprotein particle remodeling
GO:0034383 P low-density lipoprotein particle clearance
GO:0034384 P high-density lipoprotein particle clearance
GO:0035461 P vitamin transmembrane transport
GO:0042632 P cholesterol homeostasis
GO:0043231 C intracellular membrane-bounded organelle
GO:0043534 P blood vessel endothelial cell migration
GO:0043654 P recognition of apoptotic cell
GO:0043691 P reverse cholesterol transport
GO:0044406 P adhesion of symbiont to host
GO:0050892 P intestinal absorption
GO:0051000 P positive regulation of nitric-oxide synthase activity
GO:0070062 C extracellular exosome
GO:0070328 P triglyceride homeostasis
GO:0070506 F high-density lipoprotein particle receptor activity
GO:0070508 P cholesterol import
FPKM:2.06 TPM:2.22
135 A_BomoOtmSK_comp1005_c0_seq1
406bp
FPKM:1.54 TPM:1.66
136 A_BomoOtmSK_comp10060_c0_seq1
521bp
 small_subunit_processome_component_20_homolog_[Bombyx_mori]
FPKM:1.91 TPM:2.06
137 A_BomoOtmSK_comp100612_c0_seq1
326bp
FPKM:1.49 TPM:1.61
138 A_BomoOtmSK_comp10061_c0_seq1
1643bp
 actin-related_protein_3_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000902 P cell morphogenesis
GO:0003779 F actin binding
GO:0005200 F structural constituent of cytoskeleton
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005884 C actin filament
GO:0005885 C Arp2/3 protein complex
GO:0006886 P intracellular protein transport
GO:0006909 P phagocytosis
GO:0007010 P cytoskeleton organization
GO:0007015 P actin filament organization
GO:0007413 P axonal fasciculation
GO:0007520 P myoblast fusion
GO:0008064 P regulation of actin polymerization or depolymerization
GO:0010592 P positive regulation of lamellipodium assembly
GO:0015629 C actin cytoskeleton
GO:0022416 P chaeta development
GO:0030027 C lamellipodium
GO:0030036 P actin cytoskeleton organization
GO:0030037 P actin filament reorganization involved in cell cycle
GO:0030589 P pseudocleavage involved in syncytial blastoderm formation
GO:0030713 P ovarian follicle cell stalk formation
GO:0034314 P Arp2/3 complex-mediated actin nucleation
GO:0045747 P positive regulation of Notch signaling pathway
GO:0045887 P positive regulation of synaptic assembly at neuromuscular junction
GO:0051491 P positive regulation of filopodium assembly
GO:0072553 P terminal button organization
GO:0097320 P plasma membrane tubulation
FPKM:28.50 TPM:30.73
139 A_BomoOtmSK_comp10062_c0_seq1
1057bp
 LOW_QUALITY_PROTEIN:_oxysterol-binding_protein_1_[Bombyx_mori]
GO:0005515 F protein binding
GO:0006810 P transport
GO:0006869 P lipid transport
GO:0007286 P spermatid development
GO:0008289 F lipid binding
GO:0015485 F cholesterol binding
GO:0016020 C membrane
GO:0097440 C apical dendrite
FPKM:23.27 TPM:25.09
140 A_BomoOtmSK_comp100638_c0_seq1
2092bp
 ATP-dependent_DNA_helicase_Q1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000724 P double-strand break repair via homologous recombination
GO:0000733 P obsolete DNA strand renaturation
GO:0003674 F molecular_function
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003678 F DNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0005737 C cytoplasm
GO:0006260 P DNA replication
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0008026 F helicase activity
GO:0008150 P biological_process
GO:0009378 F four-way junction helicase activity
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0032508 P DNA duplex unwinding
GO:0036310 F ATP-dependent DNA/DNA annealing activity
GO:0043140 F 3'-5' DNA helicase activity
FPKM:3.89 TPM:4.20
141 A_BomoOtmSK_comp10063_c0_seq1
1523bp
 developmentally-regulated_GTP-binding_protein_2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005515 F protein binding
GO:0005525 F GTP binding
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0007165 P signal transduction
GO:0016020 C membrane
GO:0043231 C intracellular membrane-bounded organelle
FPKM:10.42 TPM:11.23
142 A_BomoOtmSK_comp10064_c0_seq1
2181bp
 transmembrane_9_superfamily_member_4_[Bombyx_mori]
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:10.30 TPM:11.10
143 A_BomoOtmSK_comp10067_c0_seq1
1048bp
 DnaJ_(Hsp40)_homolog_6_[Bombyx_mori]
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:0.00 TPM:0.00
144 A_BomoOtmSK_comp10067_c0_seq2
1587bp
 DnaJ_(Hsp40)_homolog_6_[Bombyx_mori]
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:2.59 TPM:2.79
145 A_BomoOtmSK_comp10067_c0_seq3
1116bp
 DnaJ_(Hsp40)_homolog_6_[Bombyx_mori]
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:0.40 TPM:0.43
146 A_BomoOtmSK_comp10067_c0_seq4
1519bp
 DnaJ_(Hsp40)_homolog_6_[Bombyx_mori]
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:19.45 TPM:20.97
147 A_BomoOtmSK_comp10068_c0_seq1
502bp
FPKM:1.48 TPM:1.60
148 A_BomoOtmSK_comp10069_c0_seq1
1167bp
 uncharacterized_protein_LOC101740737_[Bombyx_mori]
GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005705 C polytene chromosome interband
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006366 P transcription by RNA polymerase II
GO:0007416 P synapse assembly
GO:0007611 P learning or memory
GO:0007613 P memory
GO:0007616 P long-term memory
GO:0008345 P larval locomotory behavior
GO:0008355 P olfactory learning
GO:0040011 P locomotion
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0048813 P dendrite morphogenesis
GO:0050773 P regulation of dendrite development
FPKM:27.83 TPM:30.00
149 A_BomoOtmSK_comp10070_c0_seq1
1892bp
 DEAD-box_helicase_Dbp80_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005643 C nuclear pore
GO:0005737 C cytoplasm
GO:0006406 P mRNA export from nucleus
GO:0006810 P transport
GO:0010501 P RNA secondary structure unwinding
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0031965 C nuclear membrane
GO:0044614 C nuclear pore cytoplasmic filaments
GO:0051028 P mRNA transport
FPKM:2.33 TPM:2.52
150 A_BomoOtmSK_comp10070_c0_seq2
1988bp
 DEAD-box_helicase_Dbp80_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005643 C nuclear pore
GO:0005737 C cytoplasm
GO:0006406 P mRNA export from nucleus
GO:0006810 P transport
GO:0010501 P RNA secondary structure unwinding
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0031965 C nuclear membrane
GO:0044614 C nuclear pore cytoplasmic filaments
GO:0051028 P mRNA transport
FPKM:5.21 TPM:5.61
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