SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search Assembled RNA-Seq

previous next from show/47999
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
61 A_BomoOtmSK_comp10027_c0_seq2
797bp
FPKM:1.83 TPM:1.97
62 A_BomoOtmSK_comp10027_c0_seq3
350bp
FPKM:0.00 TPM:0.00
63 A_BomoOtmSK_comp10028_c0_seq1
697bp
 uncharacterized_protein_LOC101735334_[Bombyx_mori]
FPKM:11.50 TPM:12.39
64 A_BomoOtmSK_comp1002985_c0_seq1
293bp
FPKM:0.77 TPM:0.83
65 A_BomoOtmSK_comp10029_c0_seq1
216bp
FPKM:1.02 TPM:1.10
66 A_BomoOtmSK_comp1002_c0_seq1
243bp
FPKM:2.63 TPM:2.84
67 A_BomoOtmSK_comp100300_c0_seq1
495bp
FPKM:3.86 TPM:4.16
68 A_BomoOtmSK_comp10030_c0_seq1
220bp
 forkhead_box_protein_J1-A_[Bombyx_mori]
FPKM:2.83 TPM:3.06
69 A_BomoOtmSK_comp10030_c1_seq1
399bp
 forkhead_box_protein_J1-A_[Bombyx_mori]
GO:0000981 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0001947 P heart looping
GO:0003146 P heart jogging
GO:0003351 P epithelial cilium movement involved in extracellular fluid movement
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007368 P determination of left/right symmetry
GO:0009611 P response to wounding
GO:0030030 P cell projection organization
GO:0042384 P cilium assembly
GO:0043565 F sequence-specific DNA binding
GO:0060271 P cilium assembly
GO:0060296 P regulation of cilium beat frequency involved in ciliary motility
FPKM:0.99 TPM:1.07
70 A_BomoOtmSK_comp10031_c0_seq1
383bp
FPKM:0.00 TPM:0.00
71 A_BomoOtmSK_comp10032_c0_seq1
294bp
 irregular_chiasm_C-roughest_protein_isoform_X3_[Bombyx_mori]
GO:0001745 P compound eye morphogenesis
GO:0005515 F protein binding
GO:0005886 C plasma membrane
GO:0005913 C adherens junction
GO:0007155 P cell adhesion
GO:0007156 P homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007409 P axonogenesis
GO:0007520 P myoblast fusion
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016202 P regulation of striated muscle tissue development
GO:0030165 F PDZ domain binding
GO:0042802 F identical protein binding
GO:0045177 C apical part of cell
GO:0046331 P lateral inhibition
GO:0046666 P retinal cell programmed cell death
GO:0046667 P compound eye retinal cell programmed cell death
GO:0048749 P compound eye development
FPKM:2.66 TPM:2.87
72 A_BomoOtmSK_comp10032_c0_seq2
1470bp
 irregular_chiasm_C-roughest_protein_isoform_X1_[Bombyx_mori]
GO:0001745 P compound eye morphogenesis
GO:0005515 F protein binding
GO:0005886 C plasma membrane
GO:0005913 C adherens junction
GO:0007155 P cell adhesion
GO:0007156 P homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007409 P axonogenesis
GO:0007520 P myoblast fusion
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016202 P regulation of striated muscle tissue development
GO:0030165 F PDZ domain binding
GO:0042802 F identical protein binding
GO:0045177 C apical part of cell
GO:0046331 P lateral inhibition
GO:0046666 P retinal cell programmed cell death
GO:0046667 P compound eye retinal cell programmed cell death
GO:0048749 P compound eye development
FPKM:1.78 TPM:1.92
73 A_BomoOtmSK_comp10032_c0_seq3
1469bp
 irregular_chiasm_C-roughest_protein_isoform_X1_[Bombyx_mori]
GO:0001745 P compound eye morphogenesis
GO:0005515 F protein binding
GO:0005886 C plasma membrane
GO:0005913 C adherens junction
GO:0007155 P cell adhesion
GO:0007156 P homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007409 P axonogenesis
GO:0007520 P myoblast fusion
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016202 P regulation of striated muscle tissue development
GO:0030165 F PDZ domain binding
GO:0042802 F identical protein binding
GO:0045177 C apical part of cell
GO:0046331 P lateral inhibition
GO:0046666 P retinal cell programmed cell death
GO:0046667 P compound eye retinal cell programmed cell death
GO:0048749 P compound eye development
FPKM:0.00 TPM:0.00
74 A_BomoOtmSK_comp100335_c0_seq1
538bp
FPKM:4.73 TPM:5.10
75 A_BomoOtmSK_comp10033_c0_seq1
578bp
 serine/threonine-protein_kinase_Genghis_Khan_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005622 C intracellular anatomical structure
GO:0006468 P protein phosphorylation
GO:0008039 P synaptic target recognition
GO:0008064 P regulation of actin polymerization or depolymerization
GO:0008154 P actin polymerization or depolymerization
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0030424 C axon
GO:0030426 C growth cone
GO:0030833 P regulation of actin filament polymerization
GO:0035556 P intracellular signal transduction
GO:0046872 F metal ion binding
FPKM:3.05 TPM:3.29
76 A_BomoOtmSK_comp10033_c1_seq1
202bp
 serine/threonine-protein_kinase_Genghis_Khan_[Bombyx_mori]
FPKM:1.36 TPM:1.47
77 A_BomoOtmSK_comp10033_c2_seq1
241bp
FPKM:0.68 TPM:0.73
78 A_BomoOtmSK_comp10034_c0_seq1
331bp
FPKM:1.73 TPM:1.86
79 A_BomoOtmSK_comp10034_c1_seq1
1124bp
 phosphatidylinositol_N-acetylglucosaminyltransferase_subunit_A_isoform_X1_[Bombyx_mori]
GO:0000506 C glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex
GO:0005515 F protein binding
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006506 P GPI anchor biosynthetic process
GO:0008194 F UDP-glycosyltransferase activity
GO:0009893 P positive regulation of metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016254 P preassembly of GPI anchor in ER membrane
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:0017176 F phosphatidylinositol N-acetylglucosaminyltransferase activity
FPKM:1.84 TPM:1.98
80 A_BomoOtmSK_comp100353_c0_seq1
955bp
FPKM:2.68 TPM:2.89
81 A_BomoOtmSK_comp10035_c0_seq1
1377bp
 cytochrome_P450,_partial_[Bombyx_mori]
FPKM:4.85 TPM:5.23
82 A_BomoOtmSK_comp1003660_c0_seq1
204bp
 LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC101737507_[Bombyx_mori]
FPKM:2.60 TPM:2.81
83 A_BomoOtmSK_comp10036_c0_seq1
770bp
 DNA_repair_protein_XRCC2_[Operophtera_brumata]
FPKM:2.06 TPM:2.22
84 A_BomoOtmSK_comp10037_c0_seq1
266bp
FPKM:1.99 TPM:2.15
85 A_BomoOtmSK_comp10037_c1_seq1
581bp
FPKM:1.73 TPM:1.87
86 A_BomoOtmSK_comp1003883_c0_seq1
296bp
FPKM:1.12 TPM:1.21
87 A_BomoOtmSK_comp10038_c0_seq1
1108bp
 cuticular_protein_hypothetical_5_precursor_[Bombyx_mori]
GO:0005576 C extracellular region
GO:0008010 F structural constituent of chitin-based larval cuticle
GO:0008061 F chitin binding
GO:0008150 P biological_process
GO:0030023 F extracellular matrix constituent conferring elasticity
GO:0031012 C extracellular matrix
GO:0032992 C protein-carbohydrate complex
GO:0040003 P chitin-based cuticle development
GO:0042302 F structural constituent of cuticle
FPKM:9.76 TPM:10.52
88 A_BomoOtmSK_comp1003912_c0_seq1
346bp
FPKM:0.52 TPM:0.57
89 A_BomoOtmSK_comp10039_c0_seq1
1692bp
 putative_alpha/beta_hydrolase_[Danaus_plexippus_plexippus]
GO:0005576 C extracellular region
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
FPKM:8.39 TPM:9.05
90 A_BomoOtmSK_comp10040_c0_seq1
2025bp
 glutathione_S-transferase_1,_isoform_C-like_[Bombyx_mori]
GO:0004364 F glutathione transferase activity
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016829 F lyase activity
GO:0018833 F DDT-dehydrochlorinase activity
FPKM:16.95 TPM:18.27
previous next from show/47999

- SilkBase 1999-2023 -