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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
31 A_BomoOtmSK_comp10014_c0_seq1
1042bp
 RPII140-upstream_gene_protein_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0007275 P multicellular organism development
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:17.21 TPM:18.55
32 A_BomoOtmSK_comp100159_c0_seq1
715bp
FPKM:2.75 TPM:2.96
33 A_BomoOtmSK_comp10015_c0_seq1
392bp
FPKM:8.21 TPM:8.85
34 A_BomoOtmSK_comp10015_c1_seq1
256bp
 uncharacterized_protein_LOC101741433_[Bombyx_mori]
FPKM:5.58 TPM:6.01
35 A_BomoOtmSK_comp100164_c0_seq1
514bp
FPKM:4.01 TPM:4.32
36 A_BomoOtmSK_comp10017_c0_seq1
412bp
 Heterogeneous_nuclear_ribonucleoprotein_Q_[Atta_colombica]
GO:0000166 F nucleotide binding
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003730 F mRNA 3'-UTR binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0006397 P mRNA processing
GO:0007623 P circadian rhythm
GO:0008380 P RNA splicing
GO:0010467 P gene expression
GO:0030425 C dendrite
GO:0030426 C growth cone
GO:0030529 C ribonucleoprotein complex
GO:0043086 P negative regulation of catalytic activity
GO:0043231 C intracellular membrane-bounded organelle
GO:0043679 C axon terminus
GO:0044822 F RNA binding
GO:0061014 P positive regulation of mRNA catabolic process
GO:0061157 P mRNA destabilization
GO:0071013 C catalytic step 2 spliceosome
FPKM:2.44 TPM:2.63
37 A_BomoOtmSK_comp100185_c0_seq1
710bp
FPKM:3.48 TPM:3.75
38 A_BomoOtmSK_comp10018_c0_seq1
727bp
 WD_repeat-containing_protein_44_[Bombyx_mori]
FPKM:3.52 TPM:3.80
39 A_BomoOtmSK_comp10018_c0_seq2
1134bp
 WD_repeat-containing_protein_44_[Bombyx_mori]
FPKM:2.48 TPM:2.67
40 A_BomoOtmSK_comp10019_c0_seq1
726bp
 tropomyosin-2_isoform_2_[Bombyx_mori]
FPKM:0.66 TPM:0.71
41 A_BomoOtmSK_comp10019_c0_seq2
1083bp
FPKM:3.44 TPM:3.71
42 A_BomoOtmSK_comp10020_c0_seq1
319bp
FPKM:1.56 TPM:1.69
43 A_BomoOtmSK_comp10020_c1_seq1
677bp
FPKM:1.40 TPM:1.51
44 A_BomoOtmSK_comp10020_c2_seq1
402bp
FPKM:1.18 TPM:1.27
45 A_BomoOtmSK_comp1002100_c0_seq1
349bp
FPKM:1.03 TPM:1.11
46 A_BomoOtmSK_comp1002220_c0_seq1
233bp
 growth_arrest-specific_protein_2_[Bombyx_mori]
FPKM:1.52 TPM:1.64
47 A_BomoOtmSK_comp100225_c0_seq1
2522bp
 leucine-rich_repeats_and_immunoglobulin-like_domains_protein_3_[Bombyx_mori]
GO:0005615 C extracellular space
GO:0005886 C plasma membrane
GO:0007275 P multicellular organism development
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030659 C cytoplasmic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0032474 P otolith morphogenesis
FPKM:3.36 TPM:3.63
48 A_BomoOtmSK_comp10022_c0_seq1
1898bp
 LOW_QUALITY_PROTEIN:_ATP-dependent_RNA_helicase_DHX8_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008026 F helicase activity
GO:0008380 P RNA splicing
GO:0016787 F hydrolase activity
GO:0042802 F identical protein binding
GO:0044822 F RNA binding
GO:0071013 C catalytic step 2 spliceosome
FPKM:7.18 TPM:7.74
49 A_BomoOtmSK_comp100233_c0_seq1
3389bp
FPKM:2.05 TPM:2.21
50 A_BomoOtmSK_comp1002367_c0_seq1
283bp
FPKM:0.84 TPM:0.90
51 A_BomoOtmSK_comp100236_c0_seq1
475bp
FPKM:1.18 TPM:1.27
52 A_BomoOtmSK_comp10023_c0_seq1
368bp
 PREDICTED:_ATPase_family_AAA_domain-containing_protein_5_[Amyelois_transitella]
FPKM:0.46 TPM:0.50
53 A_BomoOtmSK_comp10023_c1_seq1
1780bp
 ATPase_family_AAA_domain-containing_protein_5_[Helicoverpa_armigera]
GO:0000166 F nucleotide binding
GO:0003674 F molecular_function
GO:0005524 F ATP binding
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0006974 P cellular response to DNA damage stimulus
GO:0008150 P biological_process
FPKM:1.38 TPM:1.49
54 A_BomoOtmSK_comp100249_c0_seq1
269bp
FPKM:1.93 TPM:2.08
55 A_BomoOtmSK_comp10024_c0_seq1
1116bp
 density-regulated_protein_homolog_[Bombyx_mori]
GO:0002188 P translation reinitiation
GO:0003729 F mRNA binding
GO:0003743 F translation initiation factor activity
GO:0006413 P translational initiation
GO:0006417 P regulation of translation
GO:0008284 P positive regulation of cell population proliferation
GO:0035076 P ecdysone receptor-mediated signaling pathway
GO:0045948 P positive regulation of translational initiation
GO:0046628 P positive regulation of insulin receptor signaling pathway
FPKM:24.81 TPM:26.75
56 A_BomoOtmSK_comp10025_c0_seq1
1123bp
 E3_ubiquitin-protein_ligase_RNF181_[Bombyx_mori]
GO:0008270 F zinc ion binding
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0046872 F metal ion binding
FPKM:11.90 TPM:12.83
57 A_BomoOtmSK_comp10026_c0_seq1
267bp
 uncharacterized_protein_LOC101744153_[Bombyx_mori]
FPKM:0.98 TPM:1.06
58 A_BomoOtmSK_comp10026_c1_seq1
1171bp
 uncharacterized_protein_LOC101744153_[Bombyx_mori]
FPKM:2.62 TPM:2.83
59 A_BomoOtmSK_comp100275_c0_seq1
1214bp
 lipopolysaccharide-induced_tumor_necrosis_factor-alpha_factor_homolog_[Bombyx_mori]
GO:0005125 F cytokine activity
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
FPKM:2.77 TPM:2.98
60 A_BomoOtmSK_comp10027_c0_seq1
234bp
FPKM:0.75 TPM:0.81
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