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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
601 A_BomoOtmSK_comp1031607_c0_seq1
334bp
FPKM:0.85 TPM:0.91
602 A_BomoOtmSK_comp1031608_c0_seq1
337bp
FPKM:0.55 TPM:0.60
603 A_BomoOtmSK_comp1031609_c0_seq1
212bp
FPKM:1.10 TPM:1.19
604 A_BomoOtmSK_comp1031670_c0_seq1
282bp
FPKM:1.27 TPM:1.37
605 A_BomoOtmSK_comp1031673_c0_seq1
254bp
 uncharacterized_protein_LOC101744833_[Bombyx_mori]
FPKM:1.14 TPM:1.23
606 A_BomoOtmSK_comp1031690_c0_seq1
292bp
 sodium-independent_sulfate_anion_transporter-like_isoform_X2_[Helicoverpa_armigera]
FPKM:0.77 TPM:0.83
607 A_BomoOtmSK_comp1031693_c0_seq1
262bp
FPKM:0.52 TPM:0.56
608 A_BomoOtmSK_comp10316_c0_seq1
744bp
 histone_deacetylase_complex_subunit_SAP18_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000398 P mRNA splicing, via spliceosome
GO:0003714 F transcription corepressor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006342 P heterochromatin assembly
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0008134 F transcription factor binding
GO:0016580 C Sin3 complex
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
FPKM:24.99 TPM:26.95
609 A_BomoOtmSK_comp1031735_c0_seq1
275bp
FPKM:0.91 TPM:0.98
610 A_BomoOtmSK_comp1031795_c0_seq1
243bp
 carbonyl_reductase_[NADPH]_3_[Bombyx_mori]
GO:0004090 F carbonyl reductase (NADPH) activity
GO:0005737 C cytoplasm
GO:0008152 P metabolic process
GO:0016491 F oxidoreductase activity
GO:0016655 F oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor
GO:0017144 P xenobiotic metabolic process
GO:0042373 P vitamin K metabolic process
GO:0047021 F 15-hydroxyprostaglandin dehydrogenase (NADP+) activity
GO:0050221 F prostaglandin-E2 9-reductase activity
GO:0055114 P obsolete oxidation-reduction process
GO:0070062 C extracellular exosome
GO:1903561 C extracellular vesicle
FPKM:0.66 TPM:0.71
611 A_BomoOtmSK_comp10317_c0_seq1
824bp
FPKM:0.67 TPM:0.73
612 A_BomoOtmSK_comp1031813_c0_seq1
227bp
FPKM:0.84 TPM:0.90
613 A_BomoOtmSK_comp1031830_c0_seq1
250bp
 uncharacterized_protein_LOC101745081_isoform_X1_[Bombyx_mori]
FPKM:1.20 TPM:1.29
614 A_BomoOtmSK_comp1031847_c0_seq1
247bp
FPKM:1.25 TPM:1.35
615 A_BomoOtmSK_comp103184_c0_seq1
493bp
FPKM:3.33 TPM:3.59
616 A_BomoOtmSK_comp1031854_c0_seq1
323bp
 vacuolar_ATP_synthase_subunit_D_[Bombyx_mori]
GO:0000221 C vacuolar proton-transporting V-type ATPase, V1 domain
GO:0006810 P transport
GO:0006811 P ion transport
GO:0015991 P proton transmembrane transport
GO:0015992 P proton transmembrane transport
GO:0033176 C proton-transporting V-type ATPase complex
GO:0042626 F ATPase-coupled transmembrane transporter activity
GO:0046961 F proton-transporting ATPase activity, rotational mechanism
FPKM:0.91 TPM:0.98
617 A_BomoOtmSK_comp1031874_c0_seq1
227bp
 olfactory_receptor_[Bombyx_mori]
FPKM:0.84 TPM:0.90
618 A_BomoOtmSK_comp10318_c0_seq1
2090bp
FPKM:9.61 TPM:10.36
619 A_BomoOtmSK_comp10318_c1_seq1
2991bp
 actin-related_protein_2/3_complex_subunit_2_[Bombyx_mori]
GO:0000902 P cell morphogenesis
GO:0003779 F actin binding
GO:0005200 F structural constituent of cytoskeleton
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005885 C Arp2/3 protein complex
GO:0008064 P regulation of actin polymerization or depolymerization
GO:0008360 P regulation of cell shape
GO:0015629 C actin cytoskeleton
GO:0030031 P cell projection assembly
GO:0030833 P regulation of actin filament polymerization
GO:0030866 P cortical actin cytoskeleton organization
GO:0034314 P Arp2/3 complex-mediated actin nucleation
GO:0045179 C apical cortex
GO:0046331 P lateral inhibition
GO:0070938 C contractile ring
FPKM:14.44 TPM:15.56
620 A_BomoOtmSK_comp1031931_c0_seq1
213bp
FPKM:2.16 TPM:2.32
621 A_BomoOtmSK_comp1031969_c0_seq1
225bp
FPKM:0.87 TPM:0.93
622 A_BomoOtmSK_comp1031985_c0_seq1
285bp
 protein_trapped_in_endoderm-1_[Bombyx_mori]
GO:0004871 F obsolete signal transducer activity
GO:0004930 F G protein-coupled receptor activity
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0005938 C cell cortex
GO:0007165 P signal transduction
GO:0007166 P cell surface receptor signaling pathway
GO:0007186 P G protein-coupled receptor signaling pathway
GO:0007280 P pole cell migration
GO:0007281 P germ cell development
GO:0008354 P germ cell migration
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0035234 P ectopic germ cell programmed cell death
FPKM:0.82 TPM:0.89
623 A_BomoOtmSK_comp10319_c0_seq1
4225bp
 uncharacterized_protein_LOC101747197_[Bombyx_mori]
GO:0000228 C nuclear chromosome
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005700 C polytene chromosome
GO:0005721 C pericentric heterochromatin
GO:0008168 F methyltransferase activity
GO:0008270 F zinc ion binding
GO:0016458 P obsolete gene silencing
GO:0016568 P chromatin organization
GO:0016571 P histone methylation
GO:0016740 F transferase activity
GO:0018024 F histone-lysine N-methyltransferase activity
GO:0018992 P germ-line sex determination
GO:0031490 F chromatin DNA binding
GO:0032259 P methylation
GO:0034968 P histone lysine methylation
GO:0042054 F histone methyltransferase activity
GO:0046872 F metal ion binding
FPKM:2.13 TPM:2.30
624 A_BomoOtmSK_comp1032043_c0_seq1
225bp
 uncharacterized_protein_LOC110383558_[Helicoverpa_armigera]
FPKM:1.73 TPM:1.87
625 A_BomoOtmSK_comp1032054_c0_seq1
218bp
FPKM:1.96 TPM:2.11
626 A_BomoOtmSK_comp1032056_c0_seq1
222bp
FPKM:1.82 TPM:1.97
627 A_BomoOtmSK_comp1032074_c0_seq1
213bp
 neuropeptide_receptor_A32_[Bombyx_mori]
GO:0002121 P inter-male aggressive behavior
GO:0004871 F obsolete signal transducer activity
GO:0004930 F G protein-coupled receptor activity
GO:0004995 F tachykinin receptor activity
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0007165 P signal transduction
GO:0007186 P G protein-coupled receptor signaling pathway
GO:0007217 P tachykinin receptor signaling pathway
GO:0007218 P neuropeptide signaling pathway
GO:0008188 F neuropeptide receptor activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:0.00 TPM:0.00
628 A_BomoOtmSK_comp10320_c0_seq1
2345bp
 ATP-dependent_DNA_helicase_PIF1_[Bombyx_mori]
GO:0000002 P mitochondrial genome maintenance
GO:0000166 F nucleotide binding
GO:0000723 P telomere maintenance
GO:0003677 F DNA binding
GO:0003678 F DNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005657 C replication fork
GO:0005739 C mitochondrion
GO:0006260 P DNA replication
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0010521 F telomerase inhibitor activity
GO:0016787 F hydrolase activity
GO:0032211 P negative regulation of telomere maintenance via telomerase
GO:0032508 P DNA duplex unwinding
GO:0043141 F 5'-3' DNA helicase activity
GO:0044806 P G-quadruplex DNA unwinding
GO:0051974 P negative regulation of telomerase activity
FPKM:2.27 TPM:2.44
629 A_BomoOtmSK_comp10320_c0_seq2
2253bp
 ATP-dependent_DNA_helicase_PIF1_[Bombyx_mori]
GO:0000002 P mitochondrial genome maintenance
GO:0000166 F nucleotide binding
GO:0000723 P telomere maintenance
GO:0003677 F DNA binding
GO:0003678 F DNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005739 C mitochondrion
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0016787 F hydrolase activity
GO:0032508 P DNA duplex unwinding
GO:0043141 F 5'-3' DNA helicase activity
FPKM:0.26 TPM:0.28
630 A_BomoOtmSK_comp103211_c0_seq1
1262bp
 protein_spindle-F_[Bombyx_mori]
FPKM:3.68 TPM:3.97
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