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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
571 A_BomoOtmSK_comp1030_c0_seq1
509bp
 zinc_finger_protein_OZF_[Bombyx_mori]
FPKM:1.58 TPM:1.71
572 A_BomoOtmSK_comp10310_c0_seq1
1397bp
 ribosomal_L1_domain-containing_protein_CG13096_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0003723 F RNA binding
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0019233 P sensory perception of pain
FPKM:11.99 TPM:12.93
573 A_BomoOtmSK_comp1031197_c0_seq1
266bp
 uncharacterized_protein_LOC105841774_isoform_X1_[Bombyx_mori]
FPKM:1.00 TPM:1.07
574 A_BomoOtmSK_comp10311_c0_seq1
2259bp
 C-myc_promoter-binding_protein_isoform_X1_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0017112 F guanyl-nucleotide exchange factor activity
GO:0043547 P positive regulation of GTPase activity
FPKM:4.52 TPM:4.87
575 A_BomoOtmSK_comp1031292_c0_seq1
341bp
FPKM:0.81 TPM:0.87
576 A_BomoOtmSK_comp10312_c0_seq1
858bp
 dehydrodolichyl_diphosphate_synthase_[Bombyx_mori]
GO:0002094 F polyprenyltransferase activity
GO:0005575 C cellular_component
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006486 P protein glycosylation
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0016740 F transferase activity
GO:0016765 F transferase activity, transferring alkyl or aryl (other than methyl) groups
FPKM:0.83 TPM:0.89
577 A_BomoOtmSK_comp10312_c0_seq2
1442bp
 dehydrodolichyl_diphosphate_synthase_isoform_X1_[Bombyx_mori]
GO:0002094 F polyprenyltransferase activity
GO:0005515 F protein binding
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006486 P protein glycosylation
GO:0006489 P dolichyl diphosphate biosynthetic process
GO:0016020 C membrane
GO:0016740 F transferase activity
GO:0016765 F transferase activity, transferring alkyl or aryl (other than methyl) groups
FPKM:7.81 TPM:8.42
578 A_BomoOtmSK_comp1031321_c0_seq1
349bp
 uncharacterized_protein_LOC101743410_[Bombyx_mori]
FPKM:0.77 TPM:0.83
579 A_BomoOtmSK_comp1031324_c0_seq1
275bp
FPKM:0.91 TPM:0.98
580 A_BomoOtmSK_comp1031343_c0_seq1
275bp
FPKM:0.45 TPM:0.49
581 A_BomoOtmSK_comp1031384_c0_seq1
297bp
 attractin-like_protein_1_isoform_X2_[Bombyx_mori]
GO:0004872 F signaling receptor activity
GO:0005515 F protein binding
GO:0005615 C extracellular space
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0006954 P inflammatory response
GO:0006979 P response to oxidative stress
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0021549 P cerebellum development
GO:0030246 F carbohydrate binding
GO:0040014 P regulation of multicellular organism growth
GO:0042552 P myelination
GO:0043473 P pigmentation
GO:0070062 C extracellular exosome
FPKM:0.74 TPM:0.80
582 A_BomoOtmSK_comp1031389_c0_seq1
204bp
FPKM:3.90 TPM:4.21
583 A_BomoOtmSK_comp1031391_c0_seq1
223bp
FPKM:1.79 TPM:1.93
584 A_BomoOtmSK_comp1031393_c0_seq1
215bp
FPKM:1.04 TPM:1.12
585 A_BomoOtmSK_comp1031409_c0_seq1
228bp
FPKM:1.65 TPM:1.78
586 A_BomoOtmSK_comp1031414_c0_seq1
206bp
FPKM:1.25 TPM:1.34
587 A_BomoOtmSK_comp103144_c0_seq1
417bp
 uncharacterized_protein_LOC101741349_isoform_X3_[Bombyx_mori]
FPKM:5.14 TPM:5.54
588 A_BomoOtmSK_comp1031450_c0_seq1
276bp
 protein_slit_isoform_X1_[Bombyx_mori]
FPKM:1.35 TPM:1.45
589 A_BomoOtmSK_comp1031465_c0_seq1
461bp
 PREDICTED:_uncharacterized_protein_LOC106142953_isoform_X1_[Amyelois_transitella]
FPKM:0.77 TPM:0.83
590 A_BomoOtmSK_comp1031470_c0_seq1
208bp
FPKM:1.19 TPM:1.29
591 A_BomoOtmSK_comp10314_c0_seq1
2709bp
 cyclic_AMP_response_element-binding_protein_A_isoform_X3_[Bombyx_mori]
GO:0001158 F cis-regulatory region sequence-specific DNA binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0007431 P salivary gland development
GO:0007435 P salivary gland morphogenesis
GO:0008363 P larval chitin-based cuticle development
GO:0009953 P dorsal/ventral pattern formation
GO:0010906 P regulation of glucose metabolic process
GO:0035293 P chitin-based larval cuticle pattern formation
GO:0042803 F protein homodimerization activity
GO:0043565 F sequence-specific DNA binding
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
FPKM:9.32 TPM:10.05
592 A_BomoOtmSK_comp1031513_c0_seq1
334bp
FPKM:0.57 TPM:0.61
593 A_BomoOtmSK_comp1031521_c0_seq1
477bp
FPKM:0.29 TPM:0.32
594 A_BomoOtmSK_comp103154_c0_seq1
992bp
 E3_ubiquitin-protein_ligase_SMURF2_isoform_X2_[Bombyx_mori]
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0007179 P transforming growth factor beta receptor signaling pathway
GO:0016020 C membrane
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0045121 C membrane raft
FPKM:4.38 TPM:4.72
595 A_BomoOtmSK_comp103157_c0_seq1
1328bp
 DNA_repair_protein_complementing_XP-A_cells_homolog_[Bombyx_mori]
GO:0000110 C nucleotide-excision repair factor 1 complex
GO:0000715 P nucleotide-excision repair, DNA damage recognition
GO:0003677 F DNA binding
GO:0003684 F damaged DNA binding
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006284 P base-excision repair
GO:0006289 P nucleotide-excision repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0033683 P nucleotide-excision repair, DNA incision
GO:0046872 F metal ion binding
GO:0070914 P UV-damage excision repair
GO:1901255 P nucleotide-excision repair involved in interstrand cross-link repair
FPKM:4.38 TPM:4.72
596 A_BomoOtmSK_comp1031591_c0_seq1
277bp
 cytochrome_P450_CYP4M9_[Bombyx_mori]
GO:0004497 F monooxygenase activity
GO:0005506 F iron ion binding
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006691 P leukotriene metabolic process
GO:0006954 P inflammatory response
GO:0016020 C membrane
GO:0016491 F oxidoreductase activity
GO:0016705 F oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037 F heme binding
GO:0031090 C organelle membrane
GO:0043231 C intracellular membrane-bounded organelle
GO:0046872 F metal ion binding
GO:0055114 P obsolete oxidation-reduction process
GO:0070330 F aromatase activity
FPKM:0.89 TPM:0.96
597 A_BomoOtmSK_comp1031596_c0_seq1
249bp
 uncharacterized_protein_LOC101738532_isoform_X3_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005515 F protein binding
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005886 C plasma membrane
GO:0006886 P intracellular protein transport
GO:0006913 P nucleocytoplasmic transport
GO:0007165 P signal transduction
GO:0007264 P small GTPase mediated signal transduction
GO:0007265 P Ras protein signal transduction
GO:0007298 P border follicle cell migration
GO:0007391 P dorsal closure
GO:0007464 P R3/R4 cell fate commitment
GO:0008152 P metabolic process
GO:0008593 P regulation of Notch signaling pathway
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0022604 P regulation of cell morphogenesis
GO:0030165 F PDZ domain binding
GO:0045087 P innate immune response
GO:0045824 P negative regulation of innate immune response
GO:0046329 P negative regulation of JNK cascade
GO:0050829 P defense response to Gram-negative bacterium
FPKM:0.61 TPM:0.66
598 A_BomoOtmSK_comp10315_c0_seq1
538bp
FPKM:2.28 TPM:2.45
599 A_BomoOtmSK_comp10315_c1_seq1
338bp
FPKM:5.79 TPM:6.24
600 A_BomoOtmSK_comp10315_c1_seq2
519bp
FPKM:2.31 TPM:2.49
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