SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search Assembled RNA-Seq

previous next from show/47999
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
541 A_BomoOtmSK_comp10295_c0_seq2
1079bp
 PREDICTED:_uncharacterized_protein_LOC103313529_[Tribolium_castaneum]
FPKM:3.57 TPM:3.85
542 A_BomoOtmSK_comp102965_c0_seq1
1195bp
 aldo-keto_reductase_AKR2E4-like_isoform_X1_[Bombyx_mori]
GO:0006629 P lipid metabolic process
GO:0008202 P steroid metabolic process
GO:0016491 F oxidoreductase activity
GO:0055114 P obsolete oxidation-reduction process
FPKM:4.01 TPM:4.33
543 A_BomoOtmSK_comp10296_c0_seq1
2476bp
 uncharacterized_protein_LOC101740831_isoform_X1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0006915 P apoptotic process
GO:0008150 P biological_process
FPKM:2.66 TPM:2.87
544 A_BomoOtmSK_comp10296_c1_seq1
271bp
FPKM:0.94 TPM:1.02
545 A_BomoOtmSK_comp10297_c0_seq1
282bp
 endonuclease_and_reverse_transcriptase-like_protein_[Bombyx_mori]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
FPKM:1.14 TPM:1.23
546 A_BomoOtmSK_comp10297_c0_seq2
483bp
 polyprotein,_partial_[Bombyx_mori]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
FPKM:7.07 TPM:7.62
547 A_BomoOtmSK_comp10299_c0_seq1
1954bp
 bystin_[Bombyx_mori]
GO:0000462 P maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0001701 P in utero embryonic development
GO:0001825 P blastocyst formation
GO:0001829 P trophectodermal cell differentiation
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0008283 P cell population proliferation
GO:0016020 C membrane
GO:0042254 P ribosome biogenesis
GO:0043231 C intracellular membrane-bounded organelle
GO:0044822 F RNA binding
GO:0045177 C apical part of cell
FPKM:8.27 TPM:8.92
548 A_BomoOtmSK_comp102_c0_seq1
292bp
FPKM:0.77 TPM:0.83
549 A_BomoOtmSK_comp103003_c0_seq1
1084bp
 uncharacterized_protein_LOC101736097_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
FPKM:5.08 TPM:5.48
550 A_BomoOtmSK_comp10300_c0_seq1
776bp
FPKM:2.62 TPM:2.82
551 A_BomoOtmSK_comp10300_c0_seq2
209bp
FPKM:0.00 TPM:0.00
552 A_BomoOtmSK_comp103010_c0_seq1
907bp
FPKM:3.70 TPM:3.99
553 A_BomoOtmSK_comp10301_c0_seq1
1810bp
 deoxyhypusine_hydroxylase/monooxygenase_[Bombyx_mori]
GO:0004497 F monooxygenase activity
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0007423 P sensory organ development
GO:0007451 P dorsal/ventral lineage restriction, imaginal disc
GO:0008283 P cell population proliferation
GO:0008612 P peptidyl-lysine modification to peptidyl-hypusine
GO:0010508 P positive regulation of autophagy
GO:0016020 C membrane
GO:0016049 P cell growth
GO:0016491 F oxidoreductase activity
GO:0019135 F deoxyhypusine monooxygenase activity
GO:0042406 C extrinsic component of endoplasmic reticulum membrane
GO:0046872 F metal ion binding
GO:0055114 P obsolete oxidation-reduction process
FPKM:12.19 TPM:13.15
554 A_BomoOtmSK_comp10302_c0_seq1
475bp
 tyrosine-protein_phosphatase_10D_[Bombyx_mori]
GO:0004721 F phosphoprotein phosphatase activity
GO:0004725 F protein tyrosine phosphatase activity
GO:0004728 F obsolete signal transducer, downstream of receptor, with protein tyrosine phosphatase activity
GO:0005001 F transmembrane receptor protein tyrosine phosphatase activity
GO:0005886 C plasma membrane
GO:0006470 P protein dephosphorylation
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0007411 P axon guidance
GO:0007417 P central nervous system development
GO:0007424 P open tracheal system development
GO:0007616 P long-term memory
GO:0008045 P motor neuron axon guidance
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0016791 F phosphatase activity
GO:0023014 P signal transduction
GO:0030154 P cell differentiation
GO:0030424 C axon
GO:0035335 P peptidyl-tyrosine dephosphorylation
GO:0045177 C apical part of cell
FPKM:14.44 TPM:15.57
555 A_BomoOtmSK_comp103035_c0_seq1
1138bp
 GTP:AMP_phosphotransferase_AK3,_mitochondrial_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004017 F adenylate kinase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005525 F GTP binding
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0006139 P nucleobase-containing compound metabolic process
GO:0006172 P ADP biosynthetic process
GO:0007596 P blood coagulation
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0016776 F phosphotransferase activity, phosphate group as acceptor
GO:0019205 F nucleobase-containing compound kinase activity
GO:0046033 P AMP metabolic process
GO:0046039 P GTP metabolic process
GO:0046041 P ITP metabolic process
GO:0046051 P UTP metabolic process
GO:0046899 F nucleoside triphosphate adenylate kinase activity
FPKM:3.89 TPM:4.19
556 A_BomoOtmSK_comp10303_c0_seq1
1662bp
FPKM:11.32 TPM:12.20
557 A_BomoOtmSK_comp10304_c0_seq1
983bp
FPKM:1.94 TPM:2.09
558 A_BomoOtmSK_comp103052_c0_seq1
374bp
 uncharacterized_protein_LOC101742145_isoform_X1_[Bombyx_mori]
FPKM:4.04 TPM:4.36
559 A_BomoOtmSK_comp10305_c0_seq1
1330bp
 protein_PBDC1_[Helicoverpa_armigera]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
FPKM:9.38 TPM:10.11
560 A_BomoOtmSK_comp1030675_c0_seq1
217bp
FPKM:1.00 TPM:1.08
561 A_BomoOtmSK_comp10306_c0_seq1
1661bp
 uncharacterized_protein_LOC101743599_[Bombyx_mori]
FPKM:19.50 TPM:21.03
562 A_BomoOtmSK_comp103071_c0_seq1
2562bp
 multiple_C2_and_transmembrane_domain-containing_protein_1_isoform_X4_[Bombyx_mori]
GO:0005509 F calcium ion binding
GO:0005544 F calcium-dependent phospholipid binding
GO:0005783 C endoplasmic reticulum
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0019722 P calcium-mediated signaling
FPKM:3.36 TPM:3.62
563 A_BomoOtmSK_comp10307_c0_seq1
1467bp
 methionine--tRNA_ligase,_cytoplasmic_isoform_X2_[Bombyx_mori]
GO:0000049 F tRNA binding
GO:0000166 F nucleotide binding
GO:0003723 F RNA binding
GO:0004812 F aminoacyl-tRNA ligase activity
GO:0004825 F methionine-tRNA ligase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006412 P translation
GO:0006418 P tRNA aminoacylation for protein translation
GO:0006431 P methionyl-tRNA aminoacylation
GO:0016020 C membrane
GO:0016874 F ligase activity
GO:0070062 C extracellular exosome
FPKM:0.00 TPM:0.00
564 A_BomoOtmSK_comp10307_c0_seq2
1650bp
 methionine--tRNA_ligase,_cytoplasmic_[Bombyx_mori]
GO:0000049 F tRNA binding
GO:0000166 F nucleotide binding
GO:0003723 F RNA binding
GO:0004812 F aminoacyl-tRNA ligase activity
GO:0004825 F methionine-tRNA ligase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006412 P translation
GO:0006418 P tRNA aminoacylation for protein translation
GO:0006431 P methionyl-tRNA aminoacylation
GO:0016020 C membrane
GO:0016874 F ligase activity
GO:0070062 C extracellular exosome
FPKM:15.70 TPM:16.93
565 A_BomoOtmSK_comp10308_c0_seq1
766bp
 heterogeneous_nuclear_ribonucleoprotein_H_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003727 F single-stranded RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0008134 F transcription factor binding
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0017025 F TBP-class protein binding
GO:0030529 C ribonucleoprotein complex
GO:0043484 P regulation of RNA splicing
GO:0044822 F RNA binding
GO:0071013 C catalytic step 2 spliceosome
FPKM:30.93 TPM:33.35
566 A_BomoOtmSK_comp10308_c0_seq2
1864bp
 heterogeneous_nuclear_ribonucleoprotein_H_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003727 F single-stranded RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0008134 F transcription factor binding
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0017025 F TBP-class protein binding
GO:0030529 C ribonucleoprotein complex
GO:0043484 P regulation of RNA splicing
GO:0044822 F RNA binding
GO:0071013 C catalytic step 2 spliceosome
FPKM:0.00 TPM:0.00
567 A_BomoOtmSK_comp10308_c0_seq3
1612bp
 heterogeneous_nuclear_ribonucleoprotein_H_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0030529 C ribonucleoprotein complex
GO:0030855 P epithelial cell differentiation
GO:0044822 F RNA binding
FPKM:2.28 TPM:2.46
568 A_BomoOtmSK_comp10308_c0_seq4
514bp
 heterogeneous_nuclear_ribonucleoprotein_H_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003727 F single-stranded RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0030529 C ribonucleoprotein complex
GO:0043484 P regulation of RNA splicing
FPKM:0.00 TPM:0.00
569 A_BomoOtmSK_comp10309_c0_seq1
806bp
 protein_lingerer_isoform_X4_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005737 C cytoplasm
GO:0007610 P behavior
GO:0007620 P copulation
FPKM:1.70 TPM:1.83
570 A_BomoOtmSK_comp10309_c0_seq2
791bp
 protein_lingerer_isoform_X8_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005737 C cytoplasm
GO:0007610 P behavior
GO:0007620 P copulation
FPKM:14.08 TPM:15.19
previous next from show/47999

- SilkBase 1999-2023 -