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Search Assembled RNA-Seq

No.

Name
Length

Chromosome No./Scaffold Id
Scaffold Length

BLAST (vs nr)

Gene ontology

Transcript
Level

511

A_BomoOtmSK_comp10280_c1_seq1

516bp

Bomo_Chr23

FPKM:0.78 TPM:0.84

512

A_BomoOtmSK_comp10281_c0_seq1

1278bp

Bomo_Chr3

EF-hand_domain-containing_protein_D2_homolog_[Bombyx_mori]

GO:0005509	F	calcium ion binding
GO:0005886	C	plasma membrane
GO:0005927	C	muscle tendon junction
GO:0007498	P	mesoderm development
GO:0019233	P	sensory perception of pain
GO:0046872	F	metal ion binding

FPKM:23.67 TPM:25.52

513

A_BomoOtmSK_comp10282_c0_seq1

1241bp

Bomo_Chr24

myb/SANT-like_DNA-binding_domain-containing_protein_3_[Bombyx_mori]

FPKM:1.92 TPM:2.07

514

A_BomoOtmSK_comp10283_c0_seq1

2709bp

Bomo_Chr1

LOW_QUALITY_PROTEIN:_circadian_locomoter_output_cycles_protein_kaput_[Bombyx_mori]

GO:0000122	P	negative regulation of transcription by RNA polymerase II
GO:0000977	F	RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0003053	P	circadian regulation of heart rate
GO:0003677	F	DNA binding
GO:0003700	F	DNA-binding transcription factor activity
GO:0005515	F	protein binding
GO:0005634	C	nucleus
GO:0005667	C	transcription regulator complex
GO:0005737	C	cytoplasm
GO:0006351	P	transcription, DNA-templated
GO:0006355	P	regulation of transcription, DNA-templated
GO:0007622	P	rhythmic behavior
GO:0007623	P	circadian rhythm
GO:0008062	P	eclosion rhythm
GO:0008134	F	transcription factor binding
GO:0009266	P	response to temperature stimulus
GO:0009649	P	entrainment of circadian clock
GO:0032922	P	circadian regulation of gene expression
GO:0043066	P	negative regulation of apoptotic process
GO:0045187	P	regulation of circadian sleep/wake cycle, sleep
GO:0045475	P	locomotor rhythm
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0045944	P	positive regulation of transcription by RNA polymerase II
GO:0046982	F	protein heterodimerization activity
GO:0046983	F	protein dimerization activity
GO:0048148	P	behavioral response to cocaine
GO:0048511	P	rhythmic process

FPKM:2.24 TPM:2.42

515

A_BomoOtmSK_comp10284_c0_seq1

838bp

Bomo_Chr3

LSM_Sm-like_protein_family_member_[Bombyx_mori]

GO:0000398	P	mRNA splicing, via spliceosome
GO:0000932	C	P-body
GO:0003723	F	RNA binding
GO:0005634	C	nucleus
GO:0005681	C	spliceosomal complex
GO:0005688	C	U6 snRNP
GO:0006397	P	mRNA processing
GO:0008380	P	RNA splicing
GO:0030529	C	ribonucleoprotein complex
GO:0030629	F	U6 snRNA 3'-end binding
GO:0033962	P	P-body assembly
GO:0044822	F	RNA binding
GO:0046540	C	U4/U6 x U5 tri-snRNP complex
GO:0071011	C	precatalytic spliceosome
GO:0071013	C	catalytic step 2 spliceosome
GO:1990726	C	Lsm1-7-Pat1 complex

FPKM:8.83 TPM:9.52

516

A_BomoOtmSK_comp10285_c0_seq1

950bp

Bomo_Chr25

proteasome_activator_complex_subunit_4_isoform_X2_[Bombyx_mori]

GO:0000502	C	proteasome complex
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0005829	C	cytosol
GO:0006281	P	DNA repair
GO:0006974	P	cellular response to DNA damage stimulus
GO:0007275	P	multicellular organism development
GO:0007283	P	spermatogenesis
GO:0010499	P	proteasomal ubiquitin-independent protein catabolic process
GO:0010952	P	positive regulation of peptidase activity
GO:0016504	F	peptidase activator activity
GO:0016607	C	nuclear speck
GO:0030154	P	cell differentiation
GO:0035093	P	spermatogenesis, exchange of chromosomal proteins
GO:0070577	F	lysine-acetylated histone binding
GO:1990111	C	spermatoproteasome complex

FPKM:12.16 TPM:13.11

517

A_BomoOtmSK_comp102860_c0_seq1

1688bp

Bomo_Chr6

FPKM:3.45 TPM:3.72

518

A_BomoOtmSK_comp1028667_c0_seq1

279bp

Bomo_Chr16

FPKM:0.87 TPM:0.94

519

A_BomoOtmSK_comp10286_c0_seq1

1177bp

Bomo_Chr3

methyltransferase-like_protein_14_homolog_[Bombyx_mori]

GO:0001510	P	RNA methylation
GO:0005634	C	nucleus
GO:0006139	P	nucleobase-containing compound metabolic process
GO:0008168	F	methyltransferase activity
GO:0016422	F	mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity
GO:0016740	F	transferase activity
GO:0032259	P	methylation
GO:0080009	P	mRNA methylation

FPKM:13.53 TPM:14.58

520

A_BomoOtmSK_comp102870_c0_seq1

284bp

Bomo_Chr16

FPKM:5.40 TPM:5.82

521

A_BomoOtmSK_comp10287_c0_seq1

542bp

Bomo_Chr18

FPKM:3.48 TPM:3.75

522

A_BomoOtmSK_comp1028836_c0_seq1

329bp

PREDICTED:_rab_effector_MyRIP_[Nomascus_leucogenys]

FPKM:1.46 TPM:1.57

523

A_BomoOtmSK_comp102883_c0_seq1

2952bp

Bomo_Chr3

protein_bowel_[Bombyx_mori]

GO:0000122	P	negative regulation of transcription by RNA polymerase II
GO:0000981	F	DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0003676	F	nucleic acid binding
GO:0005634	C	nucleus
GO:0006351	P	transcription, DNA-templated
GO:0006355	P	regulation of transcription, DNA-templated
GO:0007275	P	multicellular organism development
GO:0007362	P	terminal region determination
GO:0007366	P	periodic partitioning by pair rule gene
GO:0007442	P	hindgut morphogenesis
GO:0007480	P	imaginal disc-derived leg morphogenesis
GO:0009880	P	embryonic pattern specification
GO:0010906	P	regulation of glucose metabolic process
GO:0016348	P	imaginal disc-derived leg joint morphogenesis
GO:0035220	P	wing disc development
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0045944	P	positive regulation of transcription by RNA polymerase II
GO:0046331	P	lateral inhibition
GO:0046872	F	metal ion binding
GO:0048617	P	embryonic foregut morphogenesis
GO:0048619	P	embryonic hindgut morphogenesis

FPKM:4.17 TPM:4.49

524

A_BomoOtmSK_comp10288_c0_seq1

230bp

Bomo_Chr12

FPKM:0.00 TPM:0.00

525

A_BomoOtmSK_comp10288_c0_seq2

259bp

Bomo_Chr12

FPKM:2.69 TPM:2.90

526

A_BomoOtmSK_comp102899_c0_seq1

2260bp

Bomo_Chr1

ADP-ribosylation_factor_GTPase-activating_protein_1_[Bombyx_mori]

GO:0000139	C	Golgi membrane
GO:0005096	F	GTPase activator activity
GO:0005515	F	protein binding
GO:0005737	C	cytoplasm
GO:0005794	C	Golgi apparatus
GO:0005829	C	cytosol
GO:0006810	P	transport
GO:0006888	P	endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0006890	P	retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
GO:0015031	P	protein transport
GO:0016192	P	vesicle-mediated transport
GO:0030100	P	regulation of endocytosis
GO:0036498	P	IRE1-mediated unfolded protein response
GO:0043547	P	positive regulation of GTPase activity
GO:0045202	C	synapse
GO:0046872	F	metal ion binding
GO:0097481	C	postsynaptic density

FPKM:3.91 TPM:4.22

527

A_BomoOtmSK_comp10289_c0_seq1

305bp

Bomo_Chr3

FPKM:1.74 TPM:1.87

528

A_BomoOtmSK_comp1028_c0_seq1

418bp

Bomo_Chr17

retrovirus-related_Pol_polyprotein_from_transposon_TNT_1-94_[Danaus_plexippus_plexippus]

FPKM:1.10 TPM:1.18

529

A_BomoOtmSK_comp102907_c0_seq1

1656bp

Bomo_Chr24

mitogen-activated_protein_kinase_kinase_kinase_kinase_5_isoform_X1_[Bombyx_mori]

GO:0000166	F	nucleotide binding
GO:0000185	P	obsolete activation of MAPKKK activity
GO:0004672	F	protein kinase activity
GO:0004674	F	protein serine/threonine kinase activity
GO:0004702	F	obsolete signal transducer, downstream of receptor, with serine/threonine kinase activity
GO:0005515	F	protein binding
GO:0005524	F	ATP binding
GO:0005737	C	cytoplasm
GO:0006468	P	protein phosphorylation
GO:0007257	P	obsolete activation of JUN kinase activity
GO:0008349	F	MAP kinase kinase kinase kinase activity
GO:0016301	F	kinase activity
GO:0016310	P	phosphorylation
GO:0016740	F	transferase activity
GO:0035556	P	intracellular signal transduction

FPKM:2.73 TPM:2.94

530

A_BomoOtmSK_comp10290_c0_seq1

1126bp

Bomo_Chr28

heme_oxygenase_[Bombyx_mori]

GO:0001525	P	angiogenesis
GO:0001666	P	response to hypoxia
GO:0001935	P	endothelial cell proliferation
GO:0002246	P	wound healing involved in inflammatory response
GO:0002686	P	negative regulation of leukocyte migration
GO:0004392	F	heme oxygenase (decyclizing) activity
GO:0004630	F	phospholipase D activity
GO:0004871	F	obsolete signal transducer activity
GO:0005515	F	protein binding
GO:0005615	C	extracellular space
GO:0005634	C	nucleus
GO:0005730	C	nucleolus
GO:0005783	C	endoplasmic reticulum
GO:0005789	C	endoplasmic reticulum membrane
GO:0005829	C	cytosol
GO:0005901	C	caveola
GO:0006788	P	heme oxidation
GO:0006879	P	cellular iron ion homeostasis
GO:0006915	P	apoptotic process
GO:0006979	P	response to oxidative stress
GO:0007264	P	small GTPase mediated signal transduction
GO:0007588	P	excretion
GO:0008217	P	regulation of blood pressure
GO:0008219	P	cell death
GO:0008285	P	negative regulation of cell population proliferation
GO:0008630	P	intrinsic apoptotic signaling pathway in response to DNA damage
GO:0010656	P	negative regulation of muscle cell apoptotic process
GO:0014806	P	smooth muscle hyperplasia
GO:0016020	C	membrane
GO:0016491	F	oxidoreductase activity
GO:0019899	F	enzyme binding
GO:0020037	F	heme binding
GO:0031670	P	cellular response to nutrient
GO:0032764	P	negative regulation of mast cell cytokine production
GO:0034101	P	erythrocyte homeostasis
GO:0034383	P	low-density lipoprotein particle clearance
GO:0034395	P	regulation of transcription from RNA polymerase II promoter in response to iron
GO:0034605	P	cellular response to heat
GO:0035094	P	response to nicotine
GO:0035556	P	intracellular signal transduction
GO:0042167	P	heme catabolic process
GO:0042168	P	heme metabolic process
GO:0042542	P	response to hydrogen peroxide
GO:0042803	F	protein homodimerization activity
GO:0043123	P	positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043231	C	intracellular membrane-bounded organelle
GO:0043305	P	negative regulation of mast cell degranulation
GO:0043392	P	negative regulation of DNA binding
GO:0043433	P	negative regulation of DNA-binding transcription factor activity
GO:0043524	P	negative regulation of neuron apoptotic process
GO:0043619	P	regulation of transcription from RNA polymerase II promoter in response to oxidative stress
GO:0043627	P	response to estrogen
GO:0045080	P	positive regulation of chemokine production
GO:0045765	P	regulation of angiogenesis
GO:0045766	P	positive regulation of angiogenesis
GO:0045909	P	vasodilation
GO:0046872	F	metal ion binding
GO:0048471	C	perinuclear region of cytoplasm
GO:0048661	P	positive regulation of smooth muscle cell proliferation
GO:0048662	P	negative regulation of smooth muscle cell proliferation
GO:0051090	P	regulation of DNA-binding transcription factor activity
GO:0051260	P	protein homooligomerization
GO:0055072	P	iron ion homeostasis
GO:0055114	P	obsolete oxidation-reduction process
GO:0071243	P	cellular response to arsenic-containing substance
GO:0071276	P	cellular response to cadmium ion
GO:0071456	P	cellular response to hypoxia
GO:1902042	P	negative regulation of extrinsic apoptotic signaling pathway via death domain receptors

FPKM:11.40 TPM:12.30

531

A_BomoOtmSK_comp10291_c0_seq1

456bp

Bomo_Chr18

FPKM:2.36 TPM:2.55

532

A_BomoOtmSK_comp102924_c0_seq1

336bp

Bomo_Chr2

FPKM:5.58 TPM:6.02

533

A_BomoOtmSK_comp10292_c0_seq1

234bp

Bomo_Chr7

FPKM:0.00 TPM:0.00

534

A_BomoOtmSK_comp102936_c0_seq1

222bp

Bomo_Chr6

FPKM:1.82 TPM:1.97

535

A_BomoOtmSK_comp102937_c0_seq1

1186bp

Bomo_Chr14

FPKM:2.71 TPM:2.93

536

A_BomoOtmSK_comp102938_c0_seq1

676bp

Bomo_Chr5

FPKM:0.70 TPM:0.75

537

A_BomoOtmSK_comp10293_c0_seq1

465bp

Bomo_Chr23

toll-like_receptor_6_[Bombyx_mori]

FPKM:0.00 TPM:0.00

538

A_BomoOtmSK_comp10293_c0_seq2

4735bp

Bomo_Chr23

toll-like_receptor_6_[Bombyx_mori]

GO:0000281	P	mitotic cytokinesis
GO:0002229	P	defense response to oomycetes
GO:0002376	P	immune system process
GO:0004888	F	transmembrane signaling receptor activity
GO:0005515	F	protein binding
GO:0005737	C	cytoplasm
GO:0005769	C	early endosome
GO:0005886	C	plasma membrane
GO:0005887	C	integral component of plasma membrane
GO:0006952	P	defense response
GO:0006955	P	immune response
GO:0006963	P	positive regulation of antibacterial peptide biosynthetic process
GO:0006967	P	positive regulation of antifungal peptide biosynthetic process
GO:0007155	P	cell adhesion
GO:0007165	P	signal transduction
GO:0007275	P	multicellular organism development
GO:0007352	P	zygotic specification of dorsal/ventral axis
GO:0007416	P	synapse assembly
GO:0007507	P	heart development
GO:0008063	P	Toll signaling pathway
GO:0009617	P	response to bacterium
GO:0009620	P	response to fungus
GO:0009880	P	embryonic pattern specification
GO:0009897	C	external side of plasma membrane
GO:0009950	P	dorsal/ventral axis specification
GO:0009986	C	cell surface
GO:0016020	C	membrane
GO:0016021	C	integral component of membrane
GO:0016201	P	synaptic target inhibition
GO:0019730	P	antimicrobial humoral response
GO:0019732	P	antifungal humoral response
GO:0019955	F	cytokine binding
GO:0030097	P	hemopoiesis
GO:0032154	C	cleavage furrow
GO:0035007	P	regulation of melanization defense response
GO:0035172	P	hemocyte proliferation
GO:0042802	F	identical protein binding
GO:0043234	C	protein-containing complex
GO:0045087	P	innate immune response
GO:0045610	P	regulation of hemocyte differentiation
GO:0045944	P	positive regulation of transcription by RNA polymerase II
GO:0050830	P	defense response to Gram-positive bacterium
GO:0050832	P	defense response to fungus
GO:0070976	F	TIR domain binding
GO:1902875	P	regulation of embryonic pattern specification