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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
481 A_BomoOtmSK_comp10265_c0_seq2
1479bp
 uncharacterized_protein_LOC101741349_isoform_X4_[Bombyx_mori]
FPKM:10.58 TPM:11.41
482 A_BomoOtmSK_comp10266_c0_seq1
408bp
FPKM:15.84 TPM:17.08
483 A_BomoOtmSK_comp10266_c0_seq2
577bp
FPKM:1.53 TPM:1.65
484 A_BomoOtmSK_comp102670_c0_seq1
572bp
FPKM:4.76 TPM:5.13
485 A_BomoOtmSK_comp10267_c0_seq1
642bp
 PREDICTED:_uncharacterized_protein_LOC105385766_[Plutella_xylostella]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0044351 P macropinocytosis
FPKM:9.02 TPM:9.72
486 A_BomoOtmSK_comp1026853_c0_seq1
224bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006310 P DNA recombination
GO:0008152 P metabolic process
GO:0009036 F type II site-specific deoxyribonuclease activity
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0032197 P transposition, RNA-mediated
GO:0032199 P reverse transcription involved in RNA-mediated transposition
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:1.76 TPM:1.90
487 A_BomoOtmSK_comp102688_c0_seq1
2308bp
 anaphase-promoting_complex_subunit_1_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005680 C anaphase-promoting complex
GO:0005829 C cytosol
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0016567 P protein ubiquitination
GO:0031145 P anaphase-promoting complex-dependent catabolic process
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0051301 P cell division
GO:0051436 P obsolete negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle
GO:0051437 P obsolete positive regulation of ubiquitin-protein ligase activity involved in regulation of mitotic cell cycle transition
GO:0051439 P obsolete regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle
GO:0070979 P protein K11-linked ubiquitination
FPKM:4.94 TPM:5.33
488 A_BomoOtmSK_comp10268_c0_seq1
2101bp
 plexin_domain-containing_protein_2_isoform_X2_[Bombyx_mori]
GO:0005886 C plasma membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0070062 C extracellular exosome
FPKM:22.67 TPM:24.44
489 A_BomoOtmSK_comp10269_c0_seq1
1887bp
 piRNA_biogenesis_protein_EXD1-like_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005737 C cytoplasm
GO:0006139 P nucleobase-containing compound metabolic process
GO:0008408 F 3'-5' exonuclease activity
GO:0031047 P gene silencing by RNA
GO:0034587 P piRNA metabolic process
GO:0042803 F protein homodimerization activity
GO:0043186 C P granule
GO:0051321 P meiotic cell cycle
GO:1990923 C PET complex
FPKM:20.37 TPM:21.96
490 A_BomoOtmSK_comp102701_c0_seq1
350bp
FPKM:5.38 TPM:5.80
491 A_BomoOtmSK_comp10270_c0_seq1
294bp
FPKM:1.52 TPM:1.64
492 A_BomoOtmSK_comp10271_c0_seq1
257bp
 PREDICTED:_probable_chitinase_3_[Papilio_machaon]
GO:0000272 P polysaccharide catabolic process
GO:0004553 F hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0004568 F chitinase activity
GO:0005575 C cellular_component
GO:0005576 C extracellular region
GO:0005975 P carbohydrate metabolic process
GO:0006030 P chitin metabolic process
GO:0006032 P chitin catabolic process
GO:0008061 F chitin binding
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0016798 F hydrolase activity, acting on glycosyl bonds
FPKM:3.31 TPM:3.56
493 A_BomoOtmSK_comp10271_c1_seq1
216bp
 Chitinase-related_protein_1_[Operophtera_brumata]
GO:0000272 P polysaccharide catabolic process
GO:0004553 F hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0004568 F chitinase activity
GO:0005575 C cellular_component
GO:0005576 C extracellular region
GO:0005975 P carbohydrate metabolic process
GO:0006030 P chitin metabolic process
GO:0006032 P chitin catabolic process
GO:0008061 F chitin binding
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0016798 F hydrolase activity, acting on glycosyl bonds
FPKM:3.05 TPM:3.29
494 A_BomoOtmSK_comp10272_c0_seq1
3205bp
 glycine_dehydrogenase_(decarboxylating),_mitochondrial_isoform_X1_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004375 F glycine dehydrogenase (decarboxylating) activity
GO:0005634 C nucleus
GO:0005739 C mitochondrion
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0005960 C glycine cleavage complex
GO:0006520 P cellular amino acid metabolic process
GO:0006544 P glycine metabolic process
GO:0006546 P glycine catabolic process
GO:0016491 F oxidoreductase activity
GO:0016594 F glycine binding
GO:0016829 F lyase activity
GO:0019464 P glycine decarboxylation via glycine cleavage system
GO:0042803 F protein homodimerization activity
GO:0055114 P obsolete oxidation-reduction process
FPKM:12.46 TPM:13.44
495 A_BomoOtmSK_comp1027380_c0_seq1
201bp
FPKM:0.00 TPM:0.00
496 A_BomoOtmSK_comp10273_c0_seq1
1721bp
 zinc_transporter_ZIP9_[Bombyx_mori]
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006829 P zinc ion transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030001 P metal ion transport
GO:0046873 F metal ion transmembrane transporter activity
GO:0055085 P transmembrane transport
FPKM:14.36 TPM:15.48
497 A_BomoOtmSK_comp102741_c0_seq1
3234bp
 MMS19_nucleotide_excision_repair_protein_homolog_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005819 C spindle
GO:0005856 C cytoskeleton
GO:0006259 P DNA metabolic process
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0016226 P iron-sulfur cluster assembly
GO:0097361 C CIA complex
FPKM:3.23 TPM:3.48
498 A_BomoOtmSK_comp102749_c0_seq1
1854bp
FPKM:3.34 TPM:3.60
499 A_BomoOtmSK_comp10274_c0_seq1
1800bp
 selenium-binding_protein_1_isoform_X2_[Bombyx_mori]
GO:0005615 C extracellular space
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006810 P transport
GO:0008430 F selenium binding
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0050873 P brown fat cell differentiation
GO:0070062 C extracellular exosome
FPKM:14.11 TPM:15.22
500 A_BomoOtmSK_comp10275_c0_seq1
3517bp
 NADP-dependent_malic_enzyme_[Bombyx_mori]
GO:0004470 F malic enzyme activity
GO:0004471 F malate dehydrogenase (decarboxylating) (NAD+) activity
GO:0004473 F malate dehydrogenase (decarboxylating) (NADP+) activity
GO:0005737 C cytoplasm
GO:0006108 P malate metabolic process
GO:0008948 F oxaloacetate decarboxylase activity
GO:0016491 F oxidoreductase activity
GO:0046872 F metal ion binding
GO:0051287 F NAD binding
GO:0055114 P obsolete oxidation-reduction process
FPKM:19.73 TPM:21.27
501 A_BomoOtmSK_comp102763_c0_seq1
312bp
FPKM:6.92 TPM:7.46
502 A_BomoOtmSK_comp102768_c0_seq1
338bp
FPKM:0.83 TPM:0.89
503 A_BomoOtmSK_comp10276_c0_seq1
351bp
FPKM:1.78 TPM:1.92
504 A_BomoOtmSK_comp10277_c0_seq1
403bp
 MOCS1A_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003824 F catalytic activity
GO:0005525 F GTP binding
GO:0006777 P Mo-molybdopterin cofactor biosynthetic process
GO:0016829 F lyase activity
GO:0019008 C molybdopterin synthase complex
GO:0032324 P molybdopterin cofactor biosynthetic process
GO:0046872 F metal ion binding
GO:0051536 F iron-sulfur cluster binding
GO:0051539 F 4 iron, 4 sulfur cluster binding
GO:0061597 F obsolete cyclic pyranopterin monophosphate synthase activity
FPKM:3.12 TPM:3.37
505 A_BomoOtmSK_comp10277_c0_seq2
402bp
 MOCS1A_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003824 F catalytic activity
GO:0005525 F GTP binding
GO:0006777 P Mo-molybdopterin cofactor biosynthetic process
GO:0016829 F lyase activity
GO:0019008 C molybdopterin synthase complex
GO:0032324 P molybdopterin cofactor biosynthetic process
GO:0046872 F metal ion binding
GO:0051536 F iron-sulfur cluster binding
GO:0051539 F 4 iron, 4 sulfur cluster binding
GO:0061597 F obsolete cyclic pyranopterin monophosphate synthase activity
FPKM:0.00 TPM:0.00
506 A_BomoOtmSK_comp10278_c0_seq1
3942bp
 LOW_QUALITY_PROTEIN:_spectrin_beta_chain,_non-erythrocytic_2_[Bombyx_mori]
GO:0002168 P instar larval development
GO:0003779 F actin binding
GO:0005509 F calcium ion binding
GO:0005516 F calmodulin binding
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005811 C lipid droplet
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005938 C cell cortex
GO:0007009 P plasma membrane organization
GO:0007026 P negative regulation of microtubule depolymerization
GO:0007274 P neuromuscular synaptic transmission
GO:0007293 P germarium-derived egg chamber formation
GO:0007294 P germarium-derived oocyte fate determination
GO:0007308 P oocyte construction
GO:0007417 P central nervous system development
GO:0008017 F microtubule binding
GO:0008091 C spectrin
GO:0008092 F cytoskeletal protein binding
GO:0008302 P female germline ring canal formation, actin assembly
GO:0008360 P regulation of cell shape
GO:0016199 P axon midline choice point recognition
GO:0016323 C basolateral plasma membrane
GO:0016337 P cell-cell adhesion
GO:0030707 P ovarian follicle cell development
GO:0030721 P spectrosome organization
GO:0030727 P germarium-derived female germ-line cyst formation
GO:0031594 C neuromuscular junction
GO:0042062 P long-term strengthening of neuromuscular junction
GO:0045169 C fusome
GO:0045170 C spectrosome
GO:0045478 P fusome organization
GO:0046872 F metal ion binding
GO:0048134 P germ-line cyst formation
GO:0048790 P maintenance of presynaptic active zone structure
GO:0050807 P regulation of synapse organization
GO:0051693 P actin filament capping
GO:0060429 P epithelium development
FPKM:20.43 TPM:22.03
507 A_BomoOtmSK_comp102794_c0_seq1
1511bp
 nuclear_inhibitor_of_protein_phosphatase_1_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0004864 F protein phosphatase inhibitor activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0007275 P multicellular organism development
GO:0008283 P cell population proliferation
GO:0008380 P RNA splicing
GO:0008599 F protein phosphatase regulator activity
GO:0016607 C nuclear speck
GO:0043086 P negative regulation of catalytic activity
GO:0050790 P regulation of catalytic activity
FPKM:4.46 TPM:4.81
508 A_BomoOtmSK_comp10279_c0_seq1
1813bp
 protein_pangolin,_isoforms_A/H/I/S_isoform_X3_[Bombyx_mori]
GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0003677 F DNA binding
GO:0003705 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005667 C transcription regulator complex
GO:0005875 C microtubule associated complex
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006366 P transcription by RNA polymerase II
GO:0007275 P multicellular organism development
GO:0007367 P segment polarity determination
GO:0007435 P salivary gland morphogenesis
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0007500 P mesodermal cell fate determination
GO:0007507 P heart development
GO:0008013 F beta-catenin binding
GO:0009880 P embryonic pattern specification
GO:0010628 P positive regulation of gene expression
GO:0016055 P Wnt signaling pathway
GO:0019900 F kinase binding
GO:0030111 P regulation of Wnt signaling pathway
GO:0030178 P negative regulation of Wnt signaling pathway
GO:0035277 P spiracle morphogenesis, open tracheal system
GO:0043565 F sequence-specific DNA binding
GO:0044212 F transcription cis-regulatory region binding
GO:0045610 P regulation of hemocyte differentiation
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0060070 P canonical Wnt signaling pathway
GO:0070491 F DNA-binding transcription factor binding
GO:0072091 P regulation of stem cell proliferation
FPKM:2.49 TPM:2.68
509 A_BomoOtmSK_comp10279_c0_seq2
349bp
 protein_pangolin,_isoforms_A/H/I/S_isoform_X3_[Bombyx_mori]
GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0003677 F DNA binding
GO:0003705 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005667 C transcription regulator complex
GO:0005875 C microtubule associated complex
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006366 P transcription by RNA polymerase II
GO:0007275 P multicellular organism development
GO:0007367 P segment polarity determination
GO:0007435 P salivary gland morphogenesis
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0007500 P mesodermal cell fate determination
GO:0007507 P heart development
GO:0008013 F beta-catenin binding
GO:0009880 P embryonic pattern specification
GO:0010628 P positive regulation of gene expression
GO:0016055 P Wnt signaling pathway
GO:0019900 F kinase binding
GO:0030111 P regulation of Wnt signaling pathway
GO:0030178 P negative regulation of Wnt signaling pathway
GO:0035277 P spiracle morphogenesis, open tracheal system
GO:0043565 F sequence-specific DNA binding
GO:0044212 F transcription cis-regulatory region binding
GO:0045610 P regulation of hemocyte differentiation
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0060070 P canonical Wnt signaling pathway
GO:0070491 F DNA-binding transcription factor binding
GO:0072091 P regulation of stem cell proliferation
FPKM:1.36 TPM:1.46
510 A_BomoOtmSK_comp10280_c0_seq1
201bp
FPKM:1.39 TPM:1.50
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