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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
451 A_BomoOtmSK_comp10250_c0_seq1
306bp
FPKM:0.69 TPM:0.74
452 A_BomoOtmSK_comp10250_c1_seq1
517bp
FPKM:2.19 TPM:2.36
453 A_BomoOtmSK_comp102514_c0_seq1
261bp
 nucleolar_complex_protein_3_homolog_[Bombyx_mori]
FPKM:10.52 TPM:11.34
454 A_BomoOtmSK_comp10252_c0_seq1
2434bp
 C3_and_PZP-like_alpha-2-macroglobulin_domain-containing_protein_8_isoform_X2_[Bombyx_mori]
GO:0001933 P negative regulation of protein phosphorylation
GO:0001942 P hair follicle development
GO:0004866 F endopeptidase inhibitor activity
GO:0004867 F serine-type endopeptidase inhibitor activity
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0005886 C plasma membrane
GO:0009986 C cell surface
GO:0010466 P negative regulation of peptidase activity
GO:0010839 P negative regulation of keratinocyte proliferation
GO:0010951 P negative regulation of endopeptidase activity
GO:0016020 C membrane
GO:0030414 F peptidase inhibitor activity
GO:0030512 P negative regulation of transforming growth factor beta receptor signaling pathway
GO:0031225 C anchored component of membrane
GO:0045616 P regulation of keratinocyte differentiation
GO:0050431 F transforming growth factor beta binding
GO:0061045 P negative regulation of wound healing
GO:0072675 P osteoclast fusion
FPKM:15.86 TPM:17.10
455 A_BomoOtmSK_comp102532_c0_seq1
222bp
FPKM:0.00 TPM:0.00
456 A_BomoOtmSK_comp1025345_c0_seq1
241bp
 B-cell_lymphoma/leukemia_11A_[Bombyx_mori]
FPKM:0.68 TPM:0.73
457 A_BomoOtmSK_comp102537_c0_seq1
1978bp
 SCY1-like_protein_2_[Bombyx_mori]
GO:0002092 P positive regulation of receptor internalization
GO:0004672 F protein kinase activity
GO:0005102 F signaling receptor binding
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0005794 C Golgi apparatus
GO:0006468 P protein phosphorylation
GO:0008333 P endosome to lysosome transport
GO:0010008 C endosome membrane
GO:0016020 C membrane
GO:0030136 C clathrin-coated vesicle
GO:0031410 C cytoplasmic vesicle
GO:0048471 C perinuclear region of cytoplasm
GO:0090090 P negative regulation of canonical Wnt signaling pathway
GO:2000286 P receptor internalization involved in canonical Wnt signaling pathway
GO:2000370 P positive regulation of clathrin-dependent endocytosis
FPKM:4.72 TPM:5.09
458 A_BomoOtmSK_comp102543_c0_seq1
561bp
 AP-3_complex_subunit_beta-2_[Bombyx_mori]
FPKM:5.58 TPM:6.02
459 A_BomoOtmSK_comp10254_c0_seq1
920bp
 39S_ribosomal_protein_L46,_mitochondrial_isoform_X1_[Bombyx_mori]
GO:0003735 F structural constituent of ribosome
GO:0005654 C nucleoplasm
GO:0005739 C mitochondrion
GO:0005762 C mitochondrial large ribosomal subunit
GO:0005840 C ribosome
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0030054 C cell junction
GO:0030529 C ribonucleoprotein complex
FPKM:9.90 TPM:10.67
460 A_BomoOtmSK_comp10255_c0_seq1
2578bp
FPKM:2.98 TPM:3.21
461 A_BomoOtmSK_comp10256_c0_seq1
436bp
FPKM:1.36 TPM:1.47
462 A_BomoOtmSK_comp102573_c0_seq1
2417bp
 breast_cancer_type_1_susceptibility_protein_homolog_[Bombyx_mori]
GO:0000724 P double-strand break repair via homologous recombination
GO:0000793 C condensed chromosome
GO:0000794 C condensed nuclear chromosome
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0003684 F damaged DNA binding
GO:0003723 F RNA binding
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0005737 C cytoplasm
GO:0005759 C mitochondrial matrix
GO:0005813 C centrosome
GO:0005886 C plasma membrane
GO:0006260 P DNA replication
GO:0006281 P DNA repair
GO:0006301 P postreplication repair
GO:0006302 P double-strand break repair
GO:0006310 P DNA recombination
GO:0006349 P regulation of gene expression by genomic imprinting
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006633 P fatty acid biosynthetic process
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007059 P chromosome segregation
GO:0007098 P centrosome cycle
GO:0007420 P brain development
GO:0007584 P response to nutrient
GO:0008270 F zinc ion binding
GO:0008630 P intrinsic apoptotic signaling pathway in response to DNA damage
GO:0009048 P dosage compensation by inactivation of X chromosome
GO:0010033 P response to organic substance
GO:0010212 P response to ionizing radiation
GO:0010575 P positive regulation of vascular endothelial growth factor production
GO:0010628 P positive regulation of gene expression
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0019899 F enzyme binding
GO:0030529 C ribonucleoprotein complex
GO:0031052 P chromosome breakage
GO:0031398 P positive regulation of protein ubiquitination
GO:0031436 C BRCA1-BARD1 complex
GO:0031572 P mitotic G2 DNA damage checkpoint signaling
GO:0031625 F ubiquitin protein ligase binding
GO:0032355 P response to estradiol
GO:0033147 P negative regulation of intracellular estrogen receptor signaling pathway
GO:0033160 P obsolete positive regulation of protein import into nucleus, translocation
GO:0033993 P response to lipid
GO:0035066 P positive regulation of histone acetylation
GO:0035067 P negative regulation of histone acetylation
GO:0042127 P regulation of cell population proliferation
GO:0043009 P chordate embryonic development
GO:0043234 C protein-containing complex
GO:0043627 P response to estrogen
GO:0044030 P regulation of DNA methylation
GO:0044212 F transcription cis-regulatory region binding
GO:0045717 P negative regulation of fatty acid biosynthetic process
GO:0045739 P positive regulation of DNA repair
GO:0045766 P positive regulation of angiogenesis
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0051298 P centrosome duplication
GO:0051571 P positive regulation of histone H3-K4 methylation
GO:0051572 P negative regulation of histone H3-K4 methylation
GO:0051573 P negative regulation of histone H3-K9 methylation
GO:0051574 P positive regulation of histone H3-K9 methylation
GO:0051865 P protein autoubiquitination
GO:0070512 P positive regulation of histone H4-K20 methylation
GO:0070531 C BRCA1-A complex
GO:0071158 P regulation of cell cycle
GO:0071356 P cellular response to tumor necrosis factor
GO:0071681 P cellular response to indole-3-methanol
GO:0085020 P protein K6-linked ubiquitination
GO:1902042 P negative regulation of extrinsic apoptotic signaling pathway via death domain receptors
GO:2000378 P negative regulation of reactive oxygen species metabolic process
GO:2000617 P positive regulation of histone H3-K9 acetylation
GO:2000620 P positive regulation of histone H4-K16 acetylation
FPKM:2.48 TPM:2.67
463 A_BomoOtmSK_comp10257_c0_seq1
2494bp
 autophagy_related_protein_Atg3-like_protein_[Bombyx_mori]
GO:0000045 P autophagosome assembly
GO:0000153 C cytoplasmic ubiquitin ligase complex
GO:0000422 P autophagy of mitochondrion
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006810 P transport
GO:0006914 P autophagy
GO:0015031 P protein transport
GO:0016874 F ligase activity
GO:0019776 F Atg8 ligase activity
GO:0019777 F Atg12 transferase activity
GO:0043653 P mitochondrial fragmentation involved in apoptotic process
GO:0044804 P autophagy of nucleus
FPKM:9.39 TPM:10.13
464 A_BomoOtmSK_comp102588_c0_seq1
741bp
FPKM:4.79 TPM:5.17
465 A_BomoOtmSK_comp10258_c0_seq1
1553bp
 titin1_[Bombyx_mori]
FPKM:24.89 TPM:26.83
466 A_BomoOtmSK_comp102592_c0_seq1
1910bp
 nuclear_RNA_export_factor_1-like_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006406 P mRNA export from nucleus
GO:0006810 P transport
GO:0007275 P multicellular organism development
GO:0016973 P poly(A)+ mRNA export from nucleus
GO:0042272 C nuclear RNA export factor complex
GO:0044822 F RNA binding
GO:0050658 P RNA transport
GO:0051028 P mRNA transport
FPKM:3.03 TPM:3.26
467 A_BomoOtmSK_comp10259_c0_seq1
771bp
 LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC101739343_[Bombyx_mori]
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005089 F guanyl-nucleotide exchange factor activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0017048 F small GTPase binding
GO:0030165 F PDZ domain binding
GO:0030971 F receptor tyrosine kinase binding
GO:0035023 P regulation of Rho protein signal transduction
GO:0043065 P positive regulation of apoptotic process
GO:0051056 P regulation of small GTPase mediated signal transduction
GO:0060326 P cell chemotaxis
GO:0090004 P positive regulation of protein localization to plasma membrane
GO:0090630 P activation of GTPase activity
FPKM:17.61 TPM:18.99
468 A_BomoOtmSK_comp1026084_c0_seq1
346bp
 uncharacterized_protein_LOC110384752_[Bombyx_mori]
FPKM:0.79 TPM:0.85
469 A_BomoOtmSK_comp10260_c0_seq1
828bp
 frizzled-2_[Bombyx_mori]
GO:0004871 F obsolete signal transducer activity
GO:0004888 F transmembrane signaling receptor activity
GO:0004930 F G protein-coupled receptor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005769 C early endosome
GO:0005770 C late endosome
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006898 P receptor-mediated endocytosis
GO:0007165 P signal transduction
GO:0007166 P cell surface receptor signaling pathway
GO:0007186 P G protein-coupled receptor signaling pathway
GO:0007275 P multicellular organism development
GO:0007411 P axon guidance
GO:0007435 P salivary gland morphogenesis
GO:0008045 P motor neuron axon guidance
GO:0008407 P chaeta morphogenesis
GO:0008585 P female gonad development
GO:0008587 P imaginal disc-derived wing margin morphogenesis
GO:0010906 P regulation of glucose metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016055 P Wnt signaling pathway
GO:0016201 P synaptic target inhibition
GO:0016477 P cell migration
GO:0017147 F Wnt-protein binding
GO:0030139 C endocytic vesicle
GO:0030165 F PDZ domain binding
GO:0031290 P retinal ganglion cell axon guidance
GO:0035206 P regulation of hemocyte proliferation
GO:0035567 P non-canonical Wnt signaling pathway
GO:0042813 F Wnt-activated receptor activity
GO:0048675 P axon extension
GO:0050808 P synapse organization
GO:0060070 P canonical Wnt signaling pathway
FPKM:13.38 TPM:14.43
470 A_BomoOtmSK_comp102611_c0_seq1
2294bp
 origin_recognition_complex_subunit_3_isoform_X1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0003677 F DNA binding
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0005664 C nuclear origin of replication recognition complex
GO:0006260 P DNA replication
GO:0008150 P biological_process
FPKM:3.67 TPM:3.95
471 A_BomoOtmSK_comp102615_c0_seq1
2429bp
 nitric_oxide-associated_protein_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005515 F protein binding
GO:0005525 F GTP binding
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006915 P apoptotic process
GO:0010941 P regulation of cell death
GO:0016020 C membrane
GO:0031314 C extrinsic component of mitochondrial inner membrane
GO:0032543 P mitochondrial translation
GO:0042254 P ribosome biogenesis
GO:0043457 P regulation of cellular respiration
GO:0044822 F RNA binding
FPKM:4.56 TPM:4.92
472 A_BomoOtmSK_comp10261_c0_seq1
1283bp
 ras-related_protein_Ral-a_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005515 F protein binding
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005886 C plasma membrane
GO:0006886 P intracellular protein transport
GO:0006913 P nucleocytoplasmic transport
GO:0007165 P signal transduction
GO:0007264 P small GTPase mediated signal transduction
GO:0007265 P Ras protein signal transduction
GO:0007298 P border follicle cell migration
GO:0007391 P dorsal closure
GO:0007464 P R3/R4 cell fate commitment
GO:0008152 P metabolic process
GO:0008593 P regulation of Notch signaling pathway
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0022604 P regulation of cell morphogenesis
GO:0030165 F PDZ domain binding
GO:0045087 P innate immune response
GO:0045824 P negative regulation of innate immune response
GO:0046329 P negative regulation of JNK cascade
GO:0050829 P defense response to Gram-negative bacterium
FPKM:11.90 TPM:12.83
473 A_BomoOtmSK_comp102636_c0_seq1
1799bp
 zinc_finger_protein_287_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008150 P biological_process
GO:0043565 F sequence-specific DNA binding
GO:0046872 F metal ion binding
FPKM:4.36 TPM:4.70
474 A_BomoOtmSK_comp10263_c0_seq1
1607bp
 S-adenosylmethionine_decarboxylase_proenzyme_isoform_X1_[Bombyx_mori]
GO:0004014 F adenosylmethionine decarboxylase activity
GO:0005829 C cytosol
GO:0006557 P S-adenosylmethioninamine biosynthetic process
GO:0006596 P polyamine biosynthetic process
GO:0006597 P spermine biosynthetic process
GO:0008295 P spermidine biosynthetic process
GO:0016829 F lyase activity
GO:0016831 F carboxy-lyase activity
GO:0050829 P defense response to Gram-negative bacterium
FPKM:10.11 TPM:10.90
475 A_BomoOtmSK_comp10264_c0_seq1
889bp
FPKM:1.83 TPM:1.97
476 A_BomoOtmSK_comp10264_c1_seq1
370bp
FPKM:2.25 TPM:2.42
477 A_BomoOtmSK_comp102650_c0_seq1
568bp
FPKM:1.34 TPM:1.45
478 A_BomoOtmSK_comp1026574_c0_seq1
228bp
FPKM:0.82 TPM:0.89
479 A_BomoOtmSK_comp1026575_c0_seq1
223bp
FPKM:2.69 TPM:2.90
480 A_BomoOtmSK_comp10265_c0_seq1
1497bp
 uncharacterized_protein_LOC101741349_isoform_X4_[Bombyx_mori]
FPKM:1.20 TPM:1.30
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