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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
421 A_BomoOtmSK_comp10236_c0_seq1
358bp
FPKM:1.71 TPM:1.85
422 A_BomoOtmSK_comp10237_c0_seq1
216bp
 uncharacterized_protein_LOC101736207_isoform_X1_[Bombyx_mori]
FPKM:1.02 TPM:1.10
423 A_BomoOtmSK_comp10237_c1_seq1
438bp
 hypothetical_protein_RR48_13886_[Papilio_machaon]
FPKM:0.88 TPM:0.95
424 A_BomoOtmSK_comp10237_c1_seq2
390bp
 hypothetical_protein_RR48_13886_[Papilio_machaon]
FPKM:0.00 TPM:0.00
425 A_BomoOtmSK_comp102383_c0_seq1
2949bp
 lysine-specific_histone_demethylase_1A_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000784 C chromosome, telomeric region
GO:0000790 C chromatin
GO:0001085 F RNA polymerase II-specific DNA-binding transcription factor binding
GO:0001701 P in utero embryonic development
GO:0002039 F p53 binding
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0003700 F DNA-binding transcription factor activity
GO:0004407 F histone deacetylase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005667 C transcription regulator complex
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006482 P protein demethylation
GO:0007275 P multicellular organism development
GO:0007596 P blood coagulation
GO:0008134 F transcription factor binding
GO:0008283 P cell population proliferation
GO:0010569 P regulation of double-strand break repair via homologous recombination
GO:0010725 P regulation of primitive erythrocyte differentiation
GO:0016491 F oxidoreductase activity
GO:0016568 P chromatin organization
GO:0016575 P histone deacetylation
GO:0019899 F enzyme binding
GO:0021983 P pituitary gland development
GO:0030374 F nuclear receptor coactivator activity
GO:0030851 P granulocyte differentiation
GO:0032091 P negative regulation of protein binding
GO:0032451 F demethylase activity
GO:0032452 F histone demethylase activity
GO:0032453 F histone H3-methyl-lysine-4 demethylase activity
GO:0032454 F histone H3-methyl-lysine-9 demethylase activity
GO:0033169 P histone H3-K9 demethylation
GO:0033184 P positive regulation of histone ubiquitination
GO:0034644 P cellular response to UV
GO:0034648 F obsolete histone demethylase activity (H3-dimethyl-K4 specific)
GO:0034720 P histone H3-K4 demethylation
GO:0042162 F telomeric DNA binding
GO:0043234 C protein-containing complex
GO:0043392 P negative regulation of DNA binding
GO:0043426 F MRF binding
GO:0043433 P negative regulation of DNA-binding transcription factor activity
GO:0043518 P negative regulation of DNA damage response, signal transduction by p53 class mediator
GO:0044212 F transcription cis-regulatory region binding
GO:0045648 P positive regulation of erythrocyte differentiation
GO:0045654 P positive regulation of megakaryocyte differentiation
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046886 P positive regulation of hormone biosynthetic process
GO:0050660 F flavin adenine dinucleotide binding
GO:0050681 F androgen receptor binding
GO:0051091 P positive regulation of DNA-binding transcription factor activity
GO:0051572 P negative regulation of histone H3-K4 methylation
GO:0051573 P negative regulation of histone H3-K9 methylation
GO:0055001 P muscle cell development
GO:0055114 P obsolete oxidation-reduction process
GO:0061752 F telomeric repeat-containing RNA binding
GO:0071480 P cellular response to gamma radiation
GO:1902166 P negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator
GO:1903827 P regulation of protein localization
GO:1990391 C DNA repair complex
GO:2000179 P positive regulation of neural precursor cell proliferation
GO:2000648 P positive regulation of stem cell proliferation
FPKM:3.94 TPM:4.25
426 A_BomoOtmSK_comp10238_c0_seq1
338bp
FPKM:1.65 TPM:1.78
427 A_BomoOtmSK_comp1023928_c0_seq1
248bp
 facilitated_trehalose_transporter_Tret1-2_homolog_[Bombyx_mori]
GO:0005215 F transporter activity
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0008643 P carbohydrate transport
GO:0015574 F trehalose transmembrane transporter activity
GO:0015771 P trehalose transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022857 F transmembrane transporter activity
GO:0022891 F transmembrane transporter activity
GO:0055085 P transmembrane transport
FPKM:1.23 TPM:1.33
428 A_BomoOtmSK_comp1023970_c0_seq1
287bp
FPKM:0.40 TPM:0.44
429 A_BomoOtmSK_comp102402_c0_seq1
493bp
 pol_protein_[Danaus_plexippus_plexippus]
FPKM:4.44 TPM:4.79
430 A_BomoOtmSK_comp1024055_c0_seq1
260bp
FPKM:0.53 TPM:0.57
431 A_BomoOtmSK_comp10240_c0_seq1
1792bp
 uncharacterized_protein_LOC101744089_[Bombyx_mori]
FPKM:8.78 TPM:9.47
432 A_BomoOtmSK_comp10241_c0_seq1
213bp
FPKM:1.08 TPM:1.16
433 A_BomoOtmSK_comp10241_c0_seq2
423bp
FPKM:1.61 TPM:1.74
434 A_BomoOtmSK_comp10242_c0_seq1
252bp
FPKM:0.59 TPM:0.63
435 A_BomoOtmSK_comp10243_c0_seq1
1784bp
 mothers_against_decapentaplegic_homolog_3_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000790 C chromatin
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000983 F RNA polymerase II general transcription initiation factor activity
GO:0000987 F cis-regulatory region sequence-specific DNA binding
GO:0000988 F obsolete transcription factor activity, protein binding
GO:0001102 F RNA polymerase II-specific DNA-binding transcription factor binding
GO:0001501 P skeletal system development
GO:0001649 P osteoblast differentiation
GO:0001657 P ureteric bud development
GO:0001666 P response to hypoxia
GO:0001707 P mesoderm formation
GO:0001756 P somitogenesis
GO:0001889 P liver development
GO:0001933 P negative regulation of protein phosphorylation
GO:0001947 P heart looping
GO:0002076 P osteoblast development
GO:0002520 P immune system development
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0003690 F double-stranded DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005160 F transforming growth factor beta receptor binding
GO:0005518 F collagen binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005637 C nuclear inner membrane
GO:0005654 C nucleoplasm
GO:0005667 C transcription regulator complex
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006810 P transport
GO:0006919 P activation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0006955 P immune response
GO:0007050 P regulation of cell cycle
GO:0007179 P transforming growth factor beta receptor signaling pathway
GO:0007183 P SMAD protein complex assembly
GO:0007369 P gastrulation
GO:0007492 P endoderm development
GO:0008013 F beta-catenin binding
GO:0008134 F transcription factor binding
GO:0008270 F zinc ion binding
GO:0009880 P embryonic pattern specification
GO:0010628 P positive regulation of gene expression
GO:0010718 P positive regulation of epithelial to mesenchymal transition
GO:0016202 P regulation of striated muscle tissue development
GO:0017015 P regulation of transforming growth factor beta receptor signaling pathway
GO:0019049 P mitigation of host defenses by virus
GO:0019901 F protein kinase binding
GO:0019902 F phosphatase binding
GO:0030308 P negative regulation of cell growth
GO:0030618 F obsolete transforming growth factor beta receptor, pathway-specific cytoplasmic mediator activity
GO:0030878 P thyroid gland development
GO:0031490 F chromatin DNA binding
GO:0031625 F ubiquitin protein ligase binding
GO:0032332 P positive regulation of chondrocyte differentiation
GO:0032909 P regulation of transforming growth factor beta2 production
GO:0032924 P activin receptor signaling pathway
GO:0033689 P negative regulation of osteoblast proliferation
GO:0035413 P positive regulation of canonical Wnt signaling pathway
GO:0035556 P intracellular signal transduction
GO:0038092 P nodal signaling pathway
GO:0042110 P T cell activation
GO:0042177 P negative regulation of protein catabolic process
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0042993 P obsolete positive regulation of transcription factor import into nucleus
GO:0043130 F ubiquitin binding
GO:0043235 C receptor complex
GO:0043425 F bHLH transcription factor binding
GO:0043565 F sequence-specific DNA binding
GO:0044212 F transcription cis-regulatory region binding
GO:0045216 P cell-cell junction organization
GO:0045599 P negative regulation of fat cell differentiation
GO:0045668 P negative regulation of osteoblast differentiation
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045930 P negative regulation of mitotic cell cycle
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0046982 F protein heterodimerization activity
GO:0048340 P paraxial mesoderm morphogenesis
GO:0048589 P developmental growth
GO:0048617 P embryonic foregut morphogenesis
GO:0048701 P embryonic cranial skeleton morphogenesis
GO:0050678 P regulation of epithelial cell proliferation
GO:0050728 P negative regulation of inflammatory response
GO:0050776 P regulation of immune response
GO:0050821 P protein stabilization
GO:0051098 P regulation of binding
GO:0060039 P pericardium development
GO:0060395 P SMAD protein signal transduction
GO:0061045 P negative regulation of wound healing
GO:0070306 P lens fiber cell differentiation
GO:0070410 F co-SMAD binding
GO:0070412 F R-SMAD binding
GO:0071141 C SMAD protein complex
GO:0071144 C heteromeric SMAD protein complex
GO:0090263 P positive regulation of canonical Wnt signaling pathway
GO:0097191 P extrinsic apoptotic signaling pathway
GO:1901203 P positive regulation of extracellular matrix assembly
FPKM:1.58 TPM:1.71
436 A_BomoOtmSK_comp10243_c0_seq2
1630bp
 mothers_against_decapentaplegic_homolog_3_[Bombyx_mori]
GO:0000790 C chromatin
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0001657 P ureteric bud development
GO:0001701 P in utero embryonic development
GO:0001706 P endoderm formation
GO:0001707 P mesoderm formation
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0003690 F double-stranded DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005160 F transforming growth factor beta receptor binding
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005667 C transcription regulator complex
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0006468 P protein phosphorylation
GO:0007179 P transforming growth factor beta receptor signaling pathway
GO:0007182 P common-partner SMAD protein phosphorylation
GO:0007183 P SMAD protein complex assembly
GO:0007352 P zygotic specification of dorsal/ventral axis
GO:0007369 P gastrulation
GO:0007389 P pattern specification process
GO:0007492 P endoderm development
GO:0007507 P heart development
GO:0008134 F transcription factor binding
GO:0008285 P negative regulation of cell population proliferation
GO:0009749 P response to glucose
GO:0009791 P post-embryonic development
GO:0009880 P embryonic pattern specification
GO:0009952 P anterior/posterior pattern specification
GO:0010628 P positive regulation of gene expression
GO:0010629 P negative regulation of gene expression
GO:0010718 P positive regulation of epithelial to mesenchymal transition
GO:0017015 P regulation of transforming growth factor beta receptor signaling pathway
GO:0019902 F phosphatase binding
GO:0023019 P signal transduction involved in regulation of gene expression
GO:0030073 P insulin secretion
GO:0030324 P lung development
GO:0030513 P positive regulation of BMP signaling pathway
GO:0030618 F obsolete transforming growth factor beta receptor, pathway-specific cytoplasmic mediator activity
GO:0031016 P pancreas development
GO:0031625 F ubiquitin protein ligase binding
GO:0032444 C activin responsive factor complex
GO:0032924 P activin receptor signaling pathway
GO:0033613 F DNA-binding transcription factor binding
GO:0034713 F type I transforming growth factor beta receptor binding
GO:0035265 P organ growth
GO:0035556 P intracellular signal transduction
GO:0038092 P nodal signaling pathway
GO:0042803 F protein homodimerization activity
GO:0043234 C protein-containing complex
GO:0045165 P cell fate commitment
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046332 F SMAD binding
GO:0046872 F metal ion binding
GO:0046982 F protein heterodimerization activity
GO:0048340 P paraxial mesoderm morphogenesis
GO:0048589 P developmental growth
GO:0048617 P embryonic foregut morphogenesis
GO:0048701 P embryonic cranial skeleton morphogenesis
GO:0051098 P regulation of binding
GO:0060021 P roof of mouth development
GO:0060039 P pericardium development
GO:0060395 P SMAD protein signal transduction
GO:0070410 F co-SMAD binding
GO:0070411 F I-SMAD binding
GO:0070412 F R-SMAD binding
GO:0070723 P response to cholesterol
GO:0071141 C SMAD protein complex
GO:0071144 C heteromeric SMAD protein complex
GO:1900224 P positive regulation of nodal signaling pathway involved in determination of lateral mesoderm left/right asymmetry
FPKM:0.70 TPM:0.75
437 A_BomoOtmSK_comp10244_c0_seq1
826bp
FPKM:2.42 TPM:2.61
438 A_BomoOtmSK_comp10245_c0_seq1
331bp
 protein_serrate_precursor_[Bombyx_mori]
GO:0005102 F signaling receptor binding
GO:0005112 F Notch binding
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0007154 P cell communication
GO:0007219 P Notch signaling pathway
GO:0007275 P multicellular organism development
GO:0007423 P sensory organ development
GO:0007431 P salivary gland development
GO:0007435 P salivary gland morphogenesis
GO:0007436 P larval salivary gland morphogenesis
GO:0007451 P dorsal/ventral lineage restriction, imaginal disc
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0009986 C cell surface
GO:0014009 P glial cell proliferation
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016324 C apical plasma membrane
GO:0016330 P second mitotic wave involved in compound eye morphogenesis
GO:0030154 P cell differentiation
GO:0030673 C axolemma
GO:0030718 P germ-line stem cell population maintenance
GO:0035017 P cuticle pattern formation
GO:0035167 P larval lymph gland hemopoiesis
GO:0035170 P lymph gland crystal cell differentiation
GO:0035214 P eye-antennal disc development
GO:0036011 P imaginal disc-derived leg segmentation
GO:0042688 P crystal cell differentiation
GO:0042689 P regulation of crystal cell differentiation
GO:0045746 P negative regulation of Notch signaling pathway
GO:0046331 P lateral inhibition
GO:0048749 P compound eye development
FPKM:5.19 TPM:5.59
439 A_BomoOtmSK_comp10246_c0_seq1
741bp
 MSL1_protein_[Bombyx_mori]
FPKM:2.01 TPM:2.17
440 A_BomoOtmSK_comp10246_c1_seq1
401bp
 MSL1_protein_[Bombyx_mori]
FPKM:0.93 TPM:1.01
441 A_BomoOtmSK_comp10246_c1_seq2
765bp
 MSL1_protein_[Bombyx_mori]
FPKM:1.06 TPM:1.14
442 A_BomoOtmSK_comp10246_c2_seq1
705bp
 MSL1_protein_[Bombyx_mori]
FPKM:1.07 TPM:1.16
443 A_BomoOtmSK_comp1024791_c0_seq1
224bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:1.76 TPM:1.90
444 A_BomoOtmSK_comp10247_c0_seq1
509bp
FPKM:1.32 TPM:1.42
445 A_BomoOtmSK_comp1024874_c0_seq1
362bp
 cuticular_protein_glycine-rich_20_precursor_[Bombyx_mori]
FPKM:0.48 TPM:0.52
446 A_BomoOtmSK_comp1024913_c0_seq1
217bp
FPKM:2.00 TPM:2.15
447 A_BomoOtmSK_comp102491_c0_seq1
553bp
FPKM:3.14 TPM:3.39
448 A_BomoOtmSK_comp1024969_c0_seq1
219bp
 zinc_finger_protein_62_homolog_[Bombyx_mori]
GO:0000981 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
FPKM:1.92 TPM:2.07
449 A_BomoOtmSK_comp10249_c0_seq1
385bp
FPKM:0.33 TPM:0.36
450 A_BomoOtmSK_comp10249_c0_seq2
1203bp
FPKM:21.99 TPM:23.71
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