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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
181 A_BomoOtmSK_comp10089_c0_seq4
1705bp
 aprataxin_and_PNK-like_factor_isoform_X6_[Bombyx_mori]
GO:0000012 P single strand break repair
GO:0000166 F nucleotide binding
GO:0003906 F DNA-(apurinic or apyrimidinic site) endonuclease activity
GO:0004520 F endodeoxyribonuclease activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006281 P DNA repair
GO:0006302 P double-strand break repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0008408 F 3'-5' exonuclease activity
GO:0016829 F lyase activity
GO:0035861 C site of double-strand break
GO:0045191 P regulation of isotype switching
GO:0046872 F metal ion binding
GO:0051106 P positive regulation of DNA ligation
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:6.00 TPM:6.46
182 A_BomoOtmSK_comp1008_c0_seq1
445bp
hypothetical_protein_M569_13380,_partial_[Genlisea_aurea]
GO:0000166 F nucleotide binding
GO:0000932 C P-body
GO:0003697 F single-stranded DNA binding
GO:0003727 F single-stranded RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005764 C lysosome
GO:0005783 C endoplasmic reticulum
GO:0010494 C cytoplasmic stress granule
GO:0030529 C ribonucleoprotein complex
GO:0032197 P transposition, RNA-mediated
GO:0042802 F identical protein binding
FPKM:0.82 TPM:0.88
183 A_BomoOtmSK_comp10090_c0_seq1
2023bp
 tubulin-specific_chaperone_E_[Bombyx_mori]
GO:0000226 P microtubule cytoskeleton organization
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0006457 P protein folding
GO:0007021 P tubulin complex assembly
GO:0007023 P post-chaperonin tubulin folding pathway
GO:0007409 P axonogenesis
GO:0008344 P adult locomotory behavior
GO:0009791 P post-embryonic development
GO:0014889 P muscle atrophy
GO:0048589 P developmental growth
GO:0048936 P peripheral nervous system neuron axonogenesis
GO:0051082 F unfolded protein binding
FPKM:12.03 TPM:12.97
184 A_BomoOtmSK_comp10090_c0_seq2
1419bp
 tubulin-specific_chaperone_E_[Bombyx_mori]
GO:0000226 P microtubule cytoskeleton organization
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0006457 P protein folding
GO:0007021 P tubulin complex assembly
GO:0007023 P post-chaperonin tubulin folding pathway
GO:0007409 P axonogenesis
GO:0008344 P adult locomotory behavior
GO:0009791 P post-embryonic development
GO:0014889 P muscle atrophy
GO:0048589 P developmental growth
GO:0048936 P peripheral nervous system neuron axonogenesis
GO:0051082 F unfolded protein binding
FPKM:1.56 TPM:1.69
185 A_BomoOtmSK_comp10092_c0_seq1
279bp
FPKM:3.92 TPM:4.23
186 A_BomoOtmSK_comp10093_c0_seq1
451bp
FPKM:2.73 TPM:2.94
187 A_BomoOtmSK_comp10094_c0_seq1
826bp
 PREDICTED:_transcription_elongation_factor_SPT5_isoform_X2_[Papilio_machaon]
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0032044 C DSIF complex
GO:0032784 P regulation of DNA-templated transcription, elongation
FPKM:8.32 TPM:8.97
188 A_BomoOtmSK_comp10095_c0_seq1
689bp
FPKM:1.19 TPM:1.29
189 A_BomoOtmSK_comp10096_c0_seq1
965bp
FPKM:2.26 TPM:2.44
190 A_BomoOtmSK_comp10097_c0_seq1
775bp
 transmembrane_protein_131-like,_partial_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0008150 P biological_process
GO:0012505 C endomembrane system
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:10.35 TPM:11.16
191 A_BomoOtmSK_comp10098_c0_seq1
250bp
 olfactory_receptor_[Bombyx_mori]
FPKM:4.20 TPM:4.53
192 A_BomoOtmSK_comp10099_c0_seq1
400bp
 LOW_QUALITY_PROTEIN:_mediator_of_RNA_polymerase_II_transcription_subunit_23_[Bombyx_mori]
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
FPKM:1.58 TPM:1.71
193 A_BomoOtmSK_comp10099_c1_seq1
486bp
 LOW_QUALITY_PROTEIN:_mediator_of_RNA_polymerase_II_transcription_subunit_23_[Bombyx_mori]
GO:0001104 F transcription coregulator activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0016592 C mediator complex
FPKM:1.30 TPM:1.41
194 A_BomoOtmSK_comp100_c0_seq1
216bp
 PREDICTED:_uncharacterized_protein_LOC106131092_[Amyelois_transitella]
FPKM:2.03 TPM:2.19
195 A_BomoOtmSK_comp100_c1_seq1
253bp
 PREDICTED:_uncharacterized_protein_LOC106131092_[Amyelois_transitella]
GO:0003676 F nucleic acid binding
GO:0003824 F catalytic activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004523 F RNA-DNA hybrid ribonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0008152 P metabolic process
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046718 P viral entry into host cell
GO:0075713 P establishment of integrated proviral latency
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
FPKM:0.58 TPM:0.62
196 A_BomoOtmSK_comp1010010_c0_seq1
234bp
FPKM:1.50 TPM:1.62
197 A_BomoOtmSK_comp101004_c0_seq1
253bp
FPKM:2.31 TPM:2.49
198 A_BomoOtmSK_comp10100_c0_seq1
253bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:1.73 TPM:1.87
199 A_BomoOtmSK_comp101012_c0_seq1
1356bp
 thymidylate_synthase_isoform_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003729 F mRNA binding
GO:0004799 F thymidylate synthase activity
GO:0005542 F folic acid binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005759 C mitochondrial matrix
GO:0006206 P pyrimidine nucleobase metabolic process
GO:0006231 P dTMP biosynthetic process
GO:0006235 P dTTP biosynthetic process
GO:0007568 P aging
GO:0007623 P circadian rhythm
GO:0008144 F obsolete drug binding
GO:0008168 F methyltransferase activity
GO:0009165 P nucleotide biosynthetic process
GO:0009636 P response to toxic substance
GO:0014070 P response to organic cyclic compound
GO:0016020 C membrane
GO:0016740 F transferase activity
GO:0019088 P transformation of host cell by virus
GO:0019860 P uracil metabolic process
GO:0031100 P animal organ regeneration
GO:0032259 P methylation
GO:0032570 P response to progesterone
GO:0033189 P response to vitamin A
GO:0034097 P response to cytokine
GO:0035999 P tetrahydrofolate interconversion
GO:0042493 P response to xenobiotic stimulus
GO:0042803 F protein homodimerization activity
GO:0045471 P response to ethanol
GO:0046078 P dUMP metabolic process
GO:0046653 P tetrahydrofolate metabolic process
GO:0046683 P response to organophosphorus
GO:0048037 F obsolete cofactor binding
GO:0048589 P developmental growth
GO:0051216 P cartilage development
GO:0051384 P response to glucocorticoid
GO:0051593 P response to folic acid
GO:0060574 P intestinal epithelial cell maturation
FPKM:4.05 TPM:4.37
200 A_BomoOtmSK_comp10101_c0_seq1
560bp
FPKM:1.26 TPM:1.36
201 A_BomoOtmSK_comp10101_c0_seq2
230bp
FPKM:0.00 TPM:0.00
202 A_BomoOtmSK_comp10102_c0_seq1
2591bp
 glycine--tRNA_ligase_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004812 F aminoacyl-tRNA ligase activity
GO:0004820 F glycine-tRNA ligase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0006412 P translation
GO:0006418 P tRNA aminoacylation for protein translation
GO:0006426 P glycyl-tRNA aminoacylation
GO:0015966 P diadenosine tetraphosphate biosynthetic process
GO:0016874 F ligase activity
GO:0046983 F protein dimerization activity
FPKM:33.13 TPM:35.72
203 A_BomoOtmSK_comp10103_c0_seq1
808bp
 CLIP-associating_protein_isoform_X7_[Helicoverpa_armigera]
GO:0000022 P mitotic spindle elongation
GO:0000070 P mitotic sister chromatid segregation
GO:0000775 C chromosome, centromeric region
GO:0000776 C kinetochore
GO:0000922 C spindle pole
GO:0005525 F GTP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005819 C spindle
GO:0005827 C polar microtubule
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0005875 C microtubule associated complex
GO:0005876 C spindle microtubule
GO:0007049 P cell cycle
GO:0007051 P spindle organization
GO:0007052 P mitotic spindle organization
GO:0007067 P mitotic cell cycle
GO:0007275 P multicellular organism development
GO:0007282 P cystoblast division
GO:0007411 P axon guidance
GO:0008017 F microtubule binding
GO:0016325 P oocyte microtubule cytoskeleton organization
GO:0019827 P stem cell population maintenance
GO:0030154 P cell differentiation
GO:0030426 C growth cone
GO:0030723 P ovarian fusome organization
GO:0031116 P positive regulation of microtubule polymerization
GO:0032154 C cleavage furrow
GO:0035099 P hemocyte migration
GO:0035371 C microtubule plus-end
GO:0040001 P establishment of mitotic spindle localization
GO:0042995 C cell projection
GO:0045169 C fusome
GO:0045172 C germline ring canal
GO:0046580 P negative regulation of Ras protein signal transduction
GO:0046602 P regulation of mitotic centrosome separation
GO:0048477 P oogenesis
GO:0051225 P spindle assembly
GO:0051301 P cell division
GO:0051315 P attachment of mitotic spindle microtubules to kinetochore
GO:0090307 P mitotic spindle assembly
FPKM:13.53 TPM:14.59
204 A_BomoOtmSK_comp1010586_c0_seq1
202bp
 hypothetical_protein_AB894_15365,_partial_[Piscirickettsia_salmonis]
GO:0003676 F nucleic acid binding
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:0.00 TPM:0.00
205 A_BomoOtmSK_comp10105_c0_seq1
312bp
FPKM:2.31 TPM:2.49
206 A_BomoOtmSK_comp10106_c0_seq1
569bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:1.85 TPM:2.00
207 A_BomoOtmSK_comp10107_c0_seq1
866bp
 histone_acetyltransferase_KAT6A_isoform_X2_[Bombyx_mori]
GO:0000786 C nucleosome
GO:0003677 F DNA binding
GO:0004402 F histone acetyltransferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006334 P nucleosome assembly
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008134 F transcription factor binding
GO:0008270 F zinc ion binding
GO:0016407 F acetyltransferase activity
GO:0016568 P chromatin organization
GO:0016573 P histone acetylation
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0016747 F acyltransferase activity, transferring groups other than amino-acyl groups
GO:0032403 F protein-containing complex binding
GO:0043966 P histone H3 acetylation
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0070776 C MOZ/MORF histone acetyltransferase complex
FPKM:7.91 TPM:8.53
208 A_BomoOtmSK_comp10108_c0_seq1
485bp
FPKM:2.71 TPM:2.92
209 A_BomoOtmSK_comp1010933_c0_seq1
401bp
FPKM:0.79 TPM:0.85
210 A_BomoOtmSK_comp10109_c0_seq1
866bp
 talin-1_[Bombyx_mori]
GO:0001726 C ruffle
GO:0002576 P platelet degranulation
GO:0003779 F actin binding
GO:0005178 F integrin binding
GO:0005200 F structural constituent of cytoskeleton
GO:0005515 F protein binding
GO:0005576 C extracellular region
GO:0005737 C cytoplasm
GO:0005815 C microtubule organizing center
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005911 C cell-cell junction
GO:0005925 C focal adhesion
GO:0006928 P movement of cell or subcellular component
GO:0006936 P muscle contraction
GO:0007016 P obsolete cytoskeletal anchoring at plasma membrane
GO:0007043 P cell-cell junction assembly
GO:0007044 P cell-substrate junction assembly
GO:0007155 P cell adhesion
GO:0009986 C cell surface
GO:0016020 C membrane
GO:0016032 P viral process
GO:0017166 F vinculin binding
GO:0030054 C cell junction
GO:0030274 F LIM domain binding
GO:0030866 P cortical actin cytoskeleton organization
GO:0032403 F protein-containing complex binding
GO:0032587 C ruffle membrane
GO:0036498 P IRE1-mediated unfolded protein response
GO:0042995 C cell projection
GO:0051015 F actin filament binding
GO:0070062 C extracellular exosome
GO:0070527 P platelet aggregation
FPKM:12.45 TPM:13.42
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