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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
211 A_BomoOtmSK_comp10110_c0_seq1
426bp
FPKM:9.86 TPM:10.63
212 A_BomoOtmSK_comp10110_c0_seq2
354bp
FPKM:1.06 TPM:1.14
213 A_BomoOtmSK_comp10111_c0_seq1
655bp
 trafficking_protein_particle_complex_subunit_5_[Bombyx_mori]
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0016192 P vesicle-mediated transport
FPKM:11.60 TPM:12.51
214 A_BomoOtmSK_comp10112_c0_seq1
221bp
FPKM:2.07 TPM:2.23
215 A_BomoOtmSK_comp10112_c0_seq2
345bp
FPKM:5.74 TPM:6.19
216 A_BomoOtmSK_comp10113_c0_seq1
355bp
 inhibin_beta_A_chain-like_precursor_[Bombyx_mori]
FPKM:1.99 TPM:2.15
217 A_BomoOtmSK_comp10114_c0_seq1
455bp
 four_and_a_half_LIM_domains_protein_2_isoform_X6_[Bombyx_mori]
FPKM:23.90 TPM:25.77
218 A_BomoOtmSK_comp10115_c0_seq1
758bp
 mitochondrial_single-stranded_DNA-binding_protein_[Bombyx_mori]
GO:0000002 P mitochondrial genome maintenance
GO:0000262 C mitochondrial chromosome
GO:0003677 F DNA binding
GO:0003697 F single-stranded DNA binding
GO:0005739 C mitochondrion
GO:0006260 P DNA replication
GO:0006264 P mitochondrial DNA replication
FPKM:11.10 TPM:11.97
219 A_BomoOtmSK_comp101166_c0_seq1
547bp
FPKM:0.59 TPM:0.64
220 A_BomoOtmSK_comp10116_c0_seq1
368bp
 probable_arginine--tRNA_ligase,_mitochondrial_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004812 F aminoacyl-tRNA ligase activity
GO:0004814 F arginine-tRNA ligase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0006412 P translation
GO:0006418 P tRNA aminoacylation for protein translation
GO:0006420 P arginyl-tRNA aminoacylation
GO:0016874 F ligase activity
GO:0032543 P mitochondrial translation
GO:0044822 F RNA binding
FPKM:0.93 TPM:1.00
221 A_BomoOtmSK_comp10116_c1_seq1
1476bp
 probable_arginine--tRNA_ligase,_mitochondrial_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004812 F aminoacyl-tRNA ligase activity
GO:0004814 F arginine-tRNA ligase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0006412 P translation
GO:0006418 P tRNA aminoacylation for protein translation
GO:0006420 P arginyl-tRNA aminoacylation
GO:0016874 F ligase activity
GO:0032543 P mitochondrial translation
GO:0044822 F RNA binding
FPKM:1.74 TPM:1.87
222 A_BomoOtmSK_comp101173_c0_seq1
968bp
FPKM:3.68 TPM:3.97
223 A_BomoOtmSK_comp10117_c0_seq1
330bp
 titin2_[Bombyx_mori]
FPKM:1.74 TPM:1.88
224 A_BomoOtmSK_comp10118_c0_seq1
3355bp
 glycerol-3-phosphate_dehydrogenase_isoform_2_[Bombyx_mori]
GO:0004368 F glycerol-3-phosphate dehydrogenase (quinone) activity
GO:0005509 F calcium ion binding
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006072 P glycerol-3-phosphate metabolic process
GO:0006094 P gluconeogenesis
GO:0009331 C glycerol-3-phosphate dehydrogenase complex
GO:0016491 F oxidoreductase activity
GO:0019563 P glycerol catabolic process
GO:0035264 P multicellular organism growth
GO:0043010 P camera-type eye development
GO:0044255 P cellular lipid metabolic process
GO:0046872 F metal ion binding
GO:0052590 F sn-glycerol-3-phosphate:ubiquinone oxidoreductase activity
GO:0052591 F sn-glycerol-3-phosphate:ubiquinone-8 oxidoreductase activity
GO:0055114 P obsolete oxidation-reduction process
FPKM:27.18 TPM:29.31
225 A_BomoOtmSK_comp101192_c0_seq1
231bp
FPKM:1.57 TPM:1.69
226 A_BomoOtmSK_comp10119_c0_seq1
968bp
 cuticular_protein_RR-1_motif_31_precursor_[Bombyx_mori]
GO:0042302 F structural constituent of cuticle
FPKM:16.78 TPM:18.09
227 A_BomoOtmSK_comp101207_c0_seq1
777bp
FPKM:3.05 TPM:3.29
228 A_BomoOtmSK_comp10120_c0_seq1
408bp
FPKM:0.95 TPM:1.03
229 A_BomoOtmSK_comp10121_c0_seq1
1814bp
 cysteine--tRNA_ligase,_cytoplasmic_[Bombyx_mori]
GO:0000049 F tRNA binding
GO:0000166 F nucleotide binding
GO:0004812 F aminoacyl-tRNA ligase activity
GO:0004817 F cysteine-tRNA ligase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0006412 P translation
GO:0006418 P tRNA aminoacylation for protein translation
GO:0006423 P cysteinyl-tRNA aminoacylation
GO:0016874 F ligase activity
GO:0046872 F metal ion binding
FPKM:10.02 TPM:10.80
230 A_BomoOtmSK_comp10122_c0_seq1
1023bp
 DID_protein_isoform_X1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008150 P biological_process
GO:0030335 P positive regulation of cell migration
GO:0033588 C elongator holoenzyme complex
FPKM:6.50 TPM:7.01
231 A_BomoOtmSK_comp10124_c0_seq1
279bp
FPKM:4.79 TPM:5.17
232 A_BomoOtmSK_comp10125_c0_seq1
603bp
FPKM:1.64 TPM:1.77
233 A_BomoOtmSK_comp1012606_c0_seq1
267bp
 Histone-lysine_N-methyltransferase_SETMAR,_partial_[Camponotus_floridanus]
FPKM:0.00 TPM:0.00
234 A_BomoOtmSK_comp10126_c0_seq1
872bp
FPKM:8.83 TPM:9.52
235 A_BomoOtmSK_comp10127_c0_seq1
1236bp
 uncharacterized_protein_LOC101738586_[Bombyx_mori]
FPKM:4.50 TPM:4.85
236 A_BomoOtmSK_comp10127_c0_seq2
656bp
 uncharacterized_protein_LOC101738586_[Bombyx_mori]
FPKM:0.00 TPM:0.00
237 A_BomoOtmSK_comp10127_c0_seq3
695bp
 uncharacterized_protein_LOC101738586_[Bombyx_mori]
FPKM:0.71 TPM:0.77
238 A_BomoOtmSK_comp10127_c0_seq4
1197bp
 uncharacterized_protein_LOC101738586_[Bombyx_mori]
FPKM:1.70 TPM:1.83
239 A_BomoOtmSK_comp10128_c0_seq1
571bp
FPKM:2.33 TPM:2.51
240 A_BomoOtmSK_comp1012960_c0_seq1
265bp
FPKM:1.01 TPM:1.08
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