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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
151 A_BomoOtmSK_comp10070_c0_seq3
1871bp
 DEAD-box_helicase_Dbp80_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005643 C nuclear pore
GO:0005737 C cytoplasm
GO:0006406 P mRNA export from nucleus
GO:0006810 P transport
GO:0010501 P RNA secondary structure unwinding
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0031965 C nuclear membrane
GO:0044614 C nuclear pore cytoplasmic filaments
GO:0051028 P mRNA transport
FPKM:17.78 TPM:19.17
152 A_BomoOtmSK_comp10072_c0_seq1
3037bp
 melanotransferrin_[Bombyx_mori]
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0006810 P transport
GO:0006811 P ion transport
GO:0046872 F metal ion binding
GO:0055072 P iron ion homeostasis
FPKM:26.68 TPM:28.76
153 A_BomoOtmSK_comp10074_c0_seq1
3225bp
 protein_unzipped_[Bombyx_mori]
GO:0005886 C plasma membrane
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0007409 P axonogenesis
GO:0007411 P axon guidance
GO:0007413 P axonal fasciculation
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030154 P cell differentiation
FPKM:5.83 TPM:6.28
154 A_BomoOtmSK_comp100751_c0_seq1
1066bp
 DNA-directed_RNA_polymerase_III_subunit_RPC3_isoform_X1_[Bombyx_mori]
GO:0001056 F RNA polymerase III activity
GO:0002376 P immune system process
GO:0003677 F DNA binding
GO:0003899 F DNA-directed 5'-3' RNA polymerase activity
GO:0005634 C nucleus
GO:0005666 C RNA polymerase III complex
GO:0006351 P transcription, DNA-templated
GO:0006383 P transcription by RNA polymerase III
GO:0032728 P positive regulation of interferon-beta production
GO:0045087 P innate immune response
GO:0045089 P positive regulation of innate immune response
GO:0051607 P defense response to virus
FPKM:5.38 TPM:5.80
155 A_BomoOtmSK_comp1007591_c0_seq1
270bp
FPKM:0.95 TPM:1.03
156 A_BomoOtmSK_comp10075_c0_seq1
833bp
 transmembrane_protein_223_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005739 C mitochondrion
GO:0007399 P nervous system development
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:9.49 TPM:10.24
157 A_BomoOtmSK_comp10076_c0_seq1
2783bp
FPKM:7.75 TPM:8.35
158 A_BomoOtmSK_comp100777_c0_seq1
352bp
FPKM:4.05 TPM:4.37
159 A_BomoOtmSK_comp10077_c0_seq1
702bp
 E3_SUMO-protein_ligase_NSE2_[Bombyx_mori]
GO:0000722 P telomere maintenance via recombination
GO:0000724 P double-strand break repair via homologous recombination
GO:0000781 C chromosome, telomeric region
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0006281 P DNA repair
GO:0006303 P double-strand break repair via nonhomologous end joining
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0008270 F zinc ion binding
GO:0016605 C PML body
GO:0016874 F ligase activity
GO:0016925 P protein sumoylation
GO:0019789 F SUMO transferase activity
GO:0030915 C Smc5-Smc6 complex
GO:0034184 P positive regulation of maintenance of mitotic sister chromatid cohesion
GO:0045842 P positive regulation of mitotic metaphase/anaphase transition
GO:0046872 F metal ion binding
GO:0051301 P cell division
GO:0090398 P cellular senescence
FPKM:12.38 TPM:13.35
160 A_BomoOtmSK_comp10078_c0_seq1
847bp
 putative_uncharacterized_protein_DDB_G0282133_[Bombyx_mori]
FPKM:2.26 TPM:2.44
161 A_BomoOtmSK_comp10079_c0_seq1
1780bp
 uncharacterized_protein_LOC101744002_[Bombyx_mori]
FPKM:0.84 TPM:0.90
162 A_BomoOtmSK_comp10079_c0_seq2
2209bp
 uncharacterized_protein_LOC101744002_[Bombyx_mori]
FPKM:1.75 TPM:1.89
163 A_BomoOtmSK_comp10080_c0_seq1
2445bp
 mitochondrial_phosphoenolpyruvate_carboxykinase_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004611 F phosphoenolpyruvate carboxykinase activity
GO:0004613 F phosphoenolpyruvate carboxykinase (GTP) activity
GO:0005525 F GTP binding
GO:0005739 C mitochondrion
GO:0006094 P gluconeogenesis
GO:0016829 F lyase activity
GO:0016831 F carboxy-lyase activity
GO:0017076 F purine nucleotide binding
GO:0046872 F metal ion binding
FPKM:47.64 TPM:51.37
164 A_BomoOtmSK_comp10080_c0_seq2
2389bp
 mitochondrial_phosphoenolpyruvate_carboxykinase_isoform_2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004611 F phosphoenolpyruvate carboxykinase activity
GO:0004613 F phosphoenolpyruvate carboxykinase (GTP) activity
GO:0005525 F GTP binding
GO:0005739 C mitochondrion
GO:0006094 P gluconeogenesis
GO:0016829 F lyase activity
GO:0016831 F carboxy-lyase activity
GO:0017076 F purine nucleotide binding
GO:0046872 F metal ion binding
FPKM:32.07 TPM:34.57
165 A_BomoOtmSK_comp10081_c0_seq1
1020bp
 thiamin_pyrophosphokinase_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004788 F thiamine diphosphokinase activity
GO:0005524 F ATP binding
GO:0006772 P thiamine metabolic process
GO:0009229 P thiamine diphosphate biosynthetic process
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0030975 F thiamine binding
FPKM:2.35 TPM:2.53
166 A_BomoOtmSK_comp10081_c0_seq2
740bp
 thiamin_pyrophosphokinase_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004788 F thiamine diphosphokinase activity
GO:0005524 F ATP binding
GO:0005829 C cytosol
GO:0006772 P thiamine metabolic process
GO:0009229 P thiamine diphosphate biosynthetic process
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0030975 F thiamine binding
GO:0042723 P thiamine-containing compound metabolic process
FPKM:0.74 TPM:0.80
167 A_BomoOtmSK_comp10082_c0_seq1
599bp
FPKM:2.18 TPM:2.35
168 A_BomoOtmSK_comp10082_c0_seq2
231bp
FPKM:2.36 TPM:2.54
169 A_BomoOtmSK_comp10083_c0_seq1
214bp
FPKM:0.00 TPM:0.00
170 A_BomoOtmSK_comp100843_c0_seq1
896bp
 uncharacterized_protein_LOC101741971_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0042273 P ribosomal large subunit biogenesis
GO:0043023 F ribosomal large subunit binding
GO:0070130 P negative regulation of mitochondrial translation
GO:0090071 P negative regulation of ribosome biogenesis
FPKM:5.51 TPM:5.94
171 A_BomoOtmSK_comp10084_c0_seq1
508bp
FPKM:7.15 TPM:7.71
172 A_BomoOtmSK_comp10085_c0_seq1
434bp
 hypothetical_protein_KGM_207087_[Danaus_plexippus_plexippus]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
FPKM:8.21 TPM:8.85
173 A_BomoOtmSK_comp10085_c0_seq2
3392bp
 uncharacterized_protein_LOC101746806_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0008150 P biological_process
GO:0044822 F RNA binding
FPKM:5.32 TPM:5.74
174 A_BomoOtmSK_comp1008657_c0_seq1
213bp
FPKM:2.16 TPM:2.32
175 A_BomoOtmSK_comp10086_c0_seq1
1468bp
 2-oxoisovalerate_dehydrogenase_subunit_alpha,_mitochondrial_isoform_X2_[Bombyx_mori]
GO:0003863 F 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006633 P fatty acid biosynthetic process
GO:0008152 P metabolic process
GO:0016491 F oxidoreductase activity
GO:0016624 F oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
GO:0046872 F metal ion binding
GO:0055114 P obsolete oxidation-reduction process
FPKM:10.19 TPM:10.98
176 A_BomoOtmSK_comp10087_c0_seq1
426bp
FPKM:2.30 TPM:2.48
177 A_BomoOtmSK_comp10088_c0_seq1
975bp
FPKM:4.36 TPM:4.70
178 A_BomoOtmSK_comp10089_c0_seq1
713bp
 aprataxin_and_PNK-like_factor_isoform_X4_[Bombyx_mori]
GO:0000012 P single strand break repair
GO:0000166 F nucleotide binding
GO:0003906 F DNA-(apurinic or apyrimidinic site) endonuclease activity
GO:0004520 F endodeoxyribonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006281 P DNA repair
GO:0006302 P double-strand break repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0008408 F 3'-5' exonuclease activity
GO:0016829 F lyase activity
GO:0035861 C site of double-strand break
GO:0045191 P regulation of isotype switching
GO:0046872 F metal ion binding
GO:0051106 P positive regulation of DNA ligation
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:0.70 TPM:0.75
179 A_BomoOtmSK_comp10089_c0_seq2
1600bp
 aprataxin_and_PNK-like_factor_isoform_X6_[Bombyx_mori]
GO:0000012 P single strand break repair
GO:0000166 F nucleotide binding
GO:0003906 F DNA-(apurinic or apyrimidinic site) endonuclease activity
GO:0004520 F endodeoxyribonuclease activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006281 P DNA repair
GO:0006302 P double-strand break repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0008408 F 3'-5' exonuclease activity
GO:0016829 F lyase activity
GO:0035861 C site of double-strand break
GO:0045191 P regulation of isotype switching
GO:0046872 F metal ion binding
GO:0051106 P positive regulation of DNA ligation
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:3.36 TPM:3.63
180 A_BomoOtmSK_comp10089_c0_seq3
818bp
 aprataxin_and_PNK-like_factor_isoform_X4_[Bombyx_mori]
GO:0000012 P single strand break repair
GO:0000166 F nucleotide binding
GO:0003906 F DNA-(apurinic or apyrimidinic site) endonuclease activity
GO:0004520 F endodeoxyribonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006281 P DNA repair
GO:0006302 P double-strand break repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0008408 F 3'-5' exonuclease activity
GO:0016829 F lyase activity
GO:0035861 C site of double-strand break
GO:0045191 P regulation of isotype switching
GO:0046872 F metal ion binding
GO:0051106 P positive regulation of DNA ligation
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:0.00 TPM:0.00
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