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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
2131 A_BomaASG_c13174_g1_i1
700bp
FPKM:2.19 TPM:1.71
2132 A_BomaASG_c13175_g1_i1
457bp
nudC_domain-containing_protein_3_isoform_X2_[Bombyx_mori]
FPKM:2.53 TPM:1.98
2133 A_BomaASG_c13177_g1_i1
577bp
exonuclease_1_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003824 F catalytic activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004527 F exonuclease activity
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006298 P mismatch repair
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0008409 F 5'-3' exonuclease activity
GO:0016787 F hydrolase activity
GO:0016788 F hydrolase activity, acting on ester bonds
GO:0035312 F 5'-3' exodeoxyribonuclease activity
GO:0045145 F single-stranded DNA 5'-3' exodeoxyribonuclease activity
GO:0046872 F metal ion binding
GO:0048256 F flap endonuclease activity
GO:0051908 F double-stranded DNA 5'-3' exodeoxyribonuclease activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:3.10 TPM:2.43
2134 A_BomaASG_c13178_g1_i1
1166bp
geranylgeranyl_transferase_type-2_subunit_beta_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004659 F prenyltransferase activity
GO:0004663 F Rab geranylgeranyltransferase activity
GO:0005515 F protein binding
GO:0005886 C plasma membrane
GO:0005968 C Rab-protein geranylgeranyltransferase complex
GO:0006464 P cellular protein modification process
GO:0007601 P visual perception
GO:0008270 F zinc ion binding
GO:0016740 F transferase activity
GO:0017137 F small GTPase binding
GO:0018344 P protein geranylgeranylation
GO:0042981 P regulation of apoptotic process
GO:0046872 F metal ion binding
FPKM:15.76 TPM:12.33
2135 A_BomaASG_c13179_g1_i1
537bp
FPKM:4.57 TPM:3.57
2136 A_BomaASG_c13180_g1_i1
249bp
FPKM:3.99 TPM:3.12
2137 A_BomaASG_c13181_g1_i1
259bp
HEAT_repeat-containing_protein_1_isoform_X2_[Bombyx_mori]
GO:0000462 P maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005739 C mitochondrion
GO:0006364 P rRNA processing
GO:0016020 C membrane
GO:0030515 F snoRNA binding
GO:0030529 C ribonucleoprotein complex
GO:0030686 C 90S preribosome
GO:0032040 C small-subunit processome
GO:0034455 C t-UTP complex
GO:0042254 P ribosome biogenesis
GO:0044822 F RNA binding
GO:0045943 P positive regulation of transcription by RNA polymerase I
FPKM:1.55 TPM:1.22
2138 A_BomaASG_c13183_g1_i1
277bp
FPKM:1.33 TPM:1.04
2139 A_BomaASG_c13185_g1_i1
1216bp
zinc_finger_protein-like_1_homolog_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0046872 F metal ion binding
FPKM:77.29 TPM:60.48
2140 A_BomaASG_c13187_g1_i1
590bp
FPKM:1.13 TPM:0.88
2141 A_BomaASG_c13188_g1_i1
335bp
proteoglycan_4-like_[Bombyx_mori]
FPKM:2.12 TPM:1.66
2142 A_BomaASG_c13189_g1_i1
1874bp
myrosinase_1_[Bombyx_mori]
GO:0004553 F hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0005975 P carbohydrate metabolic process
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0016798 F hydrolase activity, acting on glycosyl bonds
GO:0019137 F thioglucosidase activity
GO:0046872 F metal ion binding
FPKM:480.35 TPM:375.86
2143 A_BomaASG_c13190_g1_i1
207bp
FPKM:1.93 TPM:1.51
2144 A_BomaASG_c13192_g1_i1
1104bp
uncharacterized_protein_LOC101746464_isoform_X2_[Bombyx_mori]
GO:0006810 P transport
GO:0015031 P protein transport
FPKM:2.59 TPM:2.02
2145 A_BomaASG_c13193_g1_i1
959bp
uncharacterized_protein_LOC101745112_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0008150 P biological_process
GO:0016020 C membrane
FPKM:2.65 TPM:2.07
2146 A_BomaASG_c13194_g1_i1
346bp
FPKM:2.85 TPM:2.23
2147 A_BomaASG_c13195_g1_i1
1237bp
proteasome_subunit_alpha_type-1_[Bombyx_mori]
GO:0000502 C proteasome complex
GO:0001530 F lipopolysaccharide binding
GO:0002376 P immune system process
GO:0002479 P antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent
GO:0002862 P negative regulation of inflammatory response to antigenic stimulus
GO:0004175 F endopeptidase activity
GO:0004298 F threonine-type endopeptidase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005829 C cytosol
GO:0005839 C proteasome core complex
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0008233 F peptidase activity
GO:0016787 F hydrolase activity
GO:0019773 C proteasome core complex, alpha-subunit complex
GO:0051603 P proteolysis involved in cellular protein catabolic process
GO:0070062 C extracellular exosome
FPKM:48.76 TPM:38.15
2148 A_BomaASG_c13196_g1_i1
1418bp
putative_riboflavin_kinase_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005575 C cellular_component
GO:0005737 C cytoplasm
GO:0008531 F riboflavin kinase activity
GO:0009231 P riboflavin biosynthetic process
GO:0009398 P FMN biosynthetic process
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0046872 F metal ion binding
FPKM:41.78 TPM:32.69
2149 A_BomaASG_c13197_g1_i1
354bp
FPKM:0.55 TPM:0.43
2150 A_BomaASG_c13199_g1_i1
1891bp
dolichyl-diphosphooligosaccharide--protein_glycosyltransferase_subunit_1_[Bombyx_mori]
GO:0004579 F dolichyl-diphosphooligosaccharide-protein glycotransferase activity
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006486 P protein glycosylation
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:0042470 C melanosome
FPKM:150.74 TPM:117.95
2151 A_BomaASG_c13200_g1_i1
547bp
ribosomal_protein_S20_[Bombyx_mori]
GO:0003723 F RNA binding
GO:0003735 F structural constituent of ribosome
GO:0005622 C intracellular anatomical structure
GO:0005840 C ribosome
GO:0006412 P translation
GO:0015935 C small ribosomal subunit
GO:0022627 C cytosolic small ribosomal subunit
GO:0030529 C ribonucleoprotein complex
FPKM:1458.44 TPM:1141.20
2152 A_BomaASG_c13201_g1_i1
601bp
RNA_polymerase_II_transcriptional_coactivator_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003697 F single-stranded DNA binding
GO:0003713 F transcription coactivator activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0045892 P negative regulation of transcription, DNA-templated
FPKM:98.78 TPM:77.30
2153 A_BomaASG_c13202_g1_i1
475bp
uncharacterized_protein_LOC101744573_isoform_X3_[Bombyx_mori]
FPKM:1.70 TPM:1.33
2154 A_BomaASG_c13203_g1_i1
1144bp
alpha-tocopherol_transfer_protein_[Bombyx_mori]
GO:0001890 P placenta development
GO:0001892 P embryonic placenta development
GO:0005215 F transporter activity
GO:0005546 F phosphatidylinositol-4,5-bisphosphate binding
GO:0005622 C intracellular anatomical structure
GO:0005737 C cytoplasm
GO:0005770 C late endosome
GO:0005829 C cytosol
GO:0006810 P transport
GO:0007584 P response to nutrient
GO:0008289 F lipid binding
GO:0008431 F vitamin E binding
GO:0009268 P response to pH
GO:0009636 P response to toxic substance
GO:0019842 F vitamin binding
GO:0032502 P developmental process
GO:0042360 P vitamin E metabolic process
GO:0043325 F phosphatidylinositol-3,4-bisphosphate binding
GO:0046909 P obsolete intermembrane transport
GO:0051180 P vitamin transport
GO:0051452 P intracellular pH reduction
GO:0060548 P negative regulation of cell death
GO:0090212 P negative regulation of establishment of blood-brain barrier
FPKM:15.00 TPM:11.74
2155 A_BomaASG_c13205_g1_i1
532bp
FPKM:7.95 TPM:6.22
2156 A_BomaASG_c13206_g1_i1
721bp
FPKM:1.54 TPM:1.21
2157 A_BomaASG_c13207_g1_i1
526bp
FPKM:2.64 TPM:2.07
2158 A_BomaASG_c13208_g1_i1
440bp
FPKM:1.34 TPM:1.05
2159 A_BomaASG_c13211_g1_i1
306bp
FPKM:1.08 TPM:0.84
2160 A_BomaASG_c13212_g1_i1
399bp
FPKM:5.58 TPM:4.37
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