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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
61 A_BomoMSG_c10072_g2_i1
317bp
FPKM:1.08 TPM:0.56
62 A_BomoMSG_c10073_g1_i1
211bp
 myosin-11-like_[Bombyx_mori]
FPKM:3.74 TPM:1.95
63 A_BomoMSG_c10075_g1_i1
854bp
 SAP_domain-containing_ribonucleoprotein_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0016973 P poly(A)+ mRNA export from nucleus
FPKM:59.63 TPM:31.02
64 A_BomoMSG_c10076_g1_i1
249bp
FPKM:1.80 TPM:0.94
65 A_BomoMSG_c10079_g1_i1
267bp
 uncharacterized_protein_LOC105842320_[Bombyx_mori]
FPKM:2.04 TPM:1.06
66 A_BomoMSG_c1007_g1_i1
1089bp
FPKM:16.20 TPM:8.43
67 A_BomoMSG_c10080_g1_i1
307bp
FPKM:2.67 TPM:1.39
68 A_BomoMSG_c10081_g1_i1
1918bp
 Upf3_regulator_of_nonsense_transcripts-like_protein_B_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000398 P mRNA splicing, via spliceosome
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005487 F structural constituent of nuclear pore
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005815 C microtubule organizing center
GO:0005829 C cytosol
GO:0006369 P termination of RNA polymerase II transcription
GO:0006405 P RNA export from nucleus
GO:0006406 P mRNA export from nucleus
GO:0006810 P transport
GO:0031124 P mRNA 3'-end processing
GO:0035145 C exon-exon junction complex
GO:0044822 F RNA binding
GO:0045727 P positive regulation of translation
GO:0051028 P mRNA transport
FPKM:64.00 TPM:33.30
69 A_BomoMSG_c10082_g1_i1
227bp
FPKM:2.28 TPM:1.19
70 A_BomoMSG_c10083_g1_i1
388bp
FPKM:1.51 TPM:0.79
71 A_BomoMSG_c10085_g1_i1
500bp
FPKM:4.45 TPM:2.32
72 A_BomoMSG_c10088_g1_i1
308bp
FPKM:3.03 TPM:1.58
73 A_BomoMSG_c10089_g1_i1
217bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:2.58 TPM:1.34
74 A_BomoMSG_c1008_g1_i1
225bp
FPKM:2.33 TPM:1.21
75 A_BomoMSG_c10090_g1_i1
1876bp
 T-complex_protein_1_subunit_gamma_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005832 C chaperonin-containing T-complex
GO:0005875 C microtubule associated complex
GO:0006457 P protein folding
GO:0007052 P mitotic spindle organization
GO:0007430 P terminal branching, open tracheal system
GO:0042623 F ATP hydrolysis activity
GO:0051082 F unfolded protein binding
GO:0060439 P trachea morphogenesis
GO:0090307 P mitotic spindle assembly
FPKM:39.74 TPM:20.67
76 A_BomoMSG_c10091_g1_i1
252bp
FPKM:0.00 TPM:0.00
77 A_BomoMSG_c10095_g1_i1
278bp
FPKM:3.27 TPM:1.70
78 A_BomoMSG_c10098_g1_i1
259bp
FPKM:2.73 TPM:1.42
79 A_BomoMSG_c1009_g1_i1
250bp
 carboxyl/cholinesterase_6_precursor_[Bombyx_mori]
GO:0004453 F juvenile-hormone esterase activity
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0052689 F carboxylic ester hydrolase activity
FPKM:5.34 TPM:2.78
80 A_BomoMSG_c10100_g1_i1
245bp
FPKM:1.25 TPM:0.65
81 A_BomoMSG_c10106_g1_i1
2400bp
 ribonuclease_Oy_[Bombyx_mori]
GO:0003723 F RNA binding
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005576 C extracellular region
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0033897 F ribonuclease T2 activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
FPKM:113.72 TPM:59.16
82 A_BomoMSG_c10108_g1_i1
480bp
FPKM:6.36 TPM:3.31
83 A_BomoMSG_c1010_g1_i1
231bp
FPKM:2.90 TPM:1.51
84 A_BomoMSG_c10110_g1_i1
490bp
 signal_peptidase_complex_subunit_1_[Bombyx_mori]
GO:0005783 C endoplasmic reticulum
GO:0005787 C signal peptidase complex
GO:0005789 C endoplasmic reticulum membrane
GO:0006465 P signal peptide processing
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0030176 C integral component of endoplasmic reticulum membrane
GO:0031090 C organelle membrane
GO:0043231 C intracellular membrane-bounded organelle
GO:0045047 P protein targeting to ER
FPKM:375.33 TPM:195.25
85 A_BomoMSG_c10111_g1_i1
504bp
 uncharacterized_protein_LOC101741715_[Bombyx_mori]
FPKM:0.85 TPM:0.44
86 A_BomoMSG_c10111_g1_i2
319bp
FPKM:1.42 TPM:0.74
87 A_BomoMSG_c10112_g1_i1
278bp
 PREDICTED:_uncharacterized_protein_K02A2.6-like_[Plutella_xylostella]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005737 C cytoplasm
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0006508 P proteolysis
GO:0008152 P metabolic process
GO:0008233 F peptidase activity
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:2.34 TPM:1.21
88 A_BomoMSG_c10113_g1_i1
254bp
 uncharacterized_protein_LOC101745893,_partial_[Bombyx_mori]
FPKM:2.86 TPM:1.49
89 A_BomoMSG_c10114_g1_i1
2506bp
 eukaryotic_initiation_factor_4B_protein_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001731 P formation of translation preinitiation complex
GO:0002181 P cytoplasmic translation
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003743 F translation initiation factor activity
GO:0005844 C polysome
GO:0006412 P translation
GO:0006413 P translational initiation
GO:0016281 C eukaryotic translation initiation factor 4F complex
GO:0033592 F RNA strand annealing activity
GO:0034057 F RNA strand-exchange activity
GO:0043024 F ribosomal small subunit binding
GO:0044822 F RNA binding
GO:0097010 P eukaryotic translation initiation factor 4F complex assembly
FPKM:97.15 TPM:50.54
90 A_BomoMSG_c10116_g1_i1
539bp
 peroxisome_assembly_protein_12_[Bombyx_mori]
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005777 C peroxisome
GO:0005778 C peroxisomal membrane
GO:0005779 C integral component of peroxisomal membrane
GO:0006513 P protein monoubiquitination
GO:0006625 P protein targeting to peroxisome
GO:0007031 P peroxisome organization
GO:0008022 F protein C-terminus binding
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016558 P protein import into peroxisome matrix
GO:0046872 F metal ion binding
GO:1990429 C peroxisomal importomer complex
FPKM:3.39 TPM:1.76
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