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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
31 A_BomoMSG_c10037_g1_i1
2268bp
 transcription_factor_jun-D_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000165 P MAPK cascade
GO:0000790 C chromatin
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000981 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0001736 P establishment of planar polarity
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003713 F transcription coactivator activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005667 C transcription regulator complex
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006909 P phagocytosis
GO:0007254 P JNK cascade
GO:0007391 P dorsal closure
GO:0007464 P R3/R4 cell fate commitment
GO:0007465 P R7 cell fate commitment
GO:0008134 F transcription factor binding
GO:0008348 P negative regulation of antimicrobial humoral response
GO:0009314 P response to radiation
GO:0009612 P response to mechanical stimulus
GO:0010259 P multicellular organism aging
GO:0010941 P regulation of cell death
GO:0032496 P response to lipopolysaccharide
GO:0032870 P cellular response to hormone stimulus
GO:0034097 P response to cytokine
GO:0042060 P wound healing
GO:0042127 P regulation of cell population proliferation
GO:0042493 P response to xenobiotic stimulus
GO:0043565 F sequence-specific DNA binding
GO:0045597 P positive regulation of cell differentiation
GO:0045823 P positive regulation of heart contraction
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046529 P imaginal disc fusion, thorax closure
GO:0046843 P dorsal appendage formation
GO:0046844 P chorion micropyle formation
GO:0046982 F protein heterodimerization activity
GO:0051124 P synaptic assembly at neuromuscular junction
GO:0051591 P response to cAMP
GO:0051726 P regulation of cell cycle
FPKM:57.46 TPM:29.89
32 A_BomoMSG_c10038_g1_i1
2042bp
 asparagine_synthetase_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004066 F asparagine synthase (glutamine-hydrolyzing) activity
GO:0005524 F ATP binding
GO:0006529 P asparagine biosynthetic process
GO:0006541 P glutamine metabolic process
GO:0008652 P cellular amino acid biosynthetic process
GO:0016874 F ligase activity
GO:0070981 P L-asparagine biosynthetic process
FPKM:364.22 TPM:189.48
33 A_BomoMSG_c1003_g1_i1
392bp
 transmembrane_and_TPR_repeat-containing_protein_CG4050_[Bombyx_mori]
FPKM:2.97 TPM:1.55
34 A_BomoMSG_c10040_g1_i1
1486bp
 ribosome-associated_membrane_protein_4_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006486 P protein glycosylation
GO:0006810 P transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030968 P endoplasmic reticulum unfolded protein response
FPKM:1579.60 TPM:821.74
35 A_BomoMSG_c10040_g1_i2
1555bp
 ribosome-associated_membrane_protein_4_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006486 P protein glycosylation
GO:0006810 P transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030968 P endoplasmic reticulum unfolded protein response
FPKM:1098.64 TPM:571.53
36 A_BomoMSG_c10041_g1_i1
368bp
 LOW_QUALITY_PROTEIN:_papilin_[Bombyx_mori]
GO:0004222 F metalloendopeptidase activity
GO:0004867 F serine-type endopeptidase inhibitor activity
GO:0005201 F extracellular matrix structural constituent
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0005604 C basement membrane
GO:0006508 P proteolysis
GO:0007275 P multicellular organism development
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0008270 F zinc ion binding
GO:0010466 P negative regulation of peptidase activity
GO:0010951 P negative regulation of endopeptidase activity
GO:0030198 P extracellular matrix organization
GO:0030414 F peptidase inhibitor activity
GO:0031012 C extracellular matrix
FPKM:1.65 TPM:0.86
37 A_BomoMSG_c10042_g1_i1
283bp
 ankyrin-3_isoform_X1_[Bombyx_mori]
FPKM:2.25 TPM:1.17
38 A_BomoMSG_c10043_g1_i1
1287bp
 GTP-binding_nuclear_protein_Ran_[Bombyx_mori]
GO:0000054 P ribosomal subunit export from nucleus
GO:0000132 P establishment of mitotic spindle orientation
GO:0000166 F nucleotide binding
GO:0000212 P meiotic spindle organization
GO:0003924 F GTPase activity
GO:0005515 F protein binding
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005811 C lipid droplet
GO:0005819 C spindle
GO:0005856 C cytoskeleton
GO:0005875 C microtubule associated complex
GO:0005880 C nuclear microtubule
GO:0005938 C cell cortex
GO:0006606 P protein import into nucleus
GO:0006611 P protein export from nucleus
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006913 P nucleocytoplasmic transport
GO:0007015 P actin filament organization
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0007155 P cell adhesion
GO:0007165 P signal transduction
GO:0007264 P small GTPase mediated signal transduction
GO:0007346 P regulation of mitotic cell cycle
GO:0008152 P metabolic process
GO:0008360 P regulation of cell shape
GO:0009267 P cellular response to starvation
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0032880 P regulation of protein localization
GO:0048812 P neuron projection morphogenesis
GO:0051301 P cell division
GO:0072686 C mitotic spindle
FPKM:174.21 TPM:90.63
39 A_BomoMSG_c10045_g1_i1
395bp
FPKM:5.87 TPM:3.05
40 A_BomoMSG_c10046_g1_i1
499bp
FPKM:2.58 TPM:1.34
41 A_BomoMSG_c10047_g1_i1
248bp
 epsin-1_[Bombyx_mori]
FPKM:5.45 TPM:2.83
42 A_BomoMSG_c10048_g1_i1
524bp
FPKM:2.24 TPM:1.17
43 A_BomoMSG_c1004_g1_i1
267bp
FPKM:4.59 TPM:2.39
44 A_BomoMSG_c10050_g1_i1
350bp
 DNA_helicase_MCM8_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000724 P double-strand break repair via homologous recombination
GO:0003677 F DNA binding
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0006260 P DNA replication
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0016787 F hydrolase activity
GO:0097362 C MCM8-MCM9 complex
FPKM:2.40 TPM:1.25
45 A_BomoMSG_c10052_g1_i1
208bp
FPKM:2.93 TPM:1.52
46 A_BomoMSG_c10053_g1_i1
220bp
FPKM:3.31 TPM:1.72
47 A_BomoMSG_c10054_g1_i1
318bp
FPKM:6.78 TPM:3.53
48 A_BomoMSG_c10055_g1_i1
528bp
 protein_takeout_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0007610 P behavior
GO:0007617 P mating behavior
GO:0007622 P rhythmic behavior
GO:0007623 P circadian rhythm
GO:0007631 P feeding behavior
GO:0008049 P male courtship behavior
GO:0008343 P adult feeding behavior
GO:0032504 P multicellular organism reproduction
GO:0042594 P response to starvation
GO:0042595 P behavioral response to starvation
GO:0048511 P rhythmic process
FPKM:1.58 TPM:0.82
49 A_BomoMSG_c10056_g1_i1
233bp
 transportin-1_[Bombyx_mori]
GO:0000059 P obsolete protein import into nucleus, docking
GO:0000060 P obsolete protein import into nucleus, translocation
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006607 P NLS-bearing protein import into nucleus
GO:0006610 P ribosomal protein import into nucleus
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0008139 F nuclear localization sequence binding
GO:0008536 F small GTPase binding
GO:0008565 F obsolete protein transporter activity
GO:0015031 P protein transport
GO:0031965 C nuclear membrane
GO:0034399 C nuclear periphery
GO:0044822 F RNA binding
GO:0070062 C extracellular exosome
FPKM:5.67 TPM:2.95
50 A_BomoMSG_c10059_g1_i1
299bp
FPKM:6.03 TPM:3.14
51 A_BomoMSG_c10062_g1_i1
809bp
 exosome_complex_exonuclease_Rrp40_[Bombyx_mori]
GO:0000176 C nuclear exosome (RNase complex)
GO:0000177 C cytoplasmic exosome (RNase complex)
GO:0000178 C exosome (RNase complex)
GO:0000467 P exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006364 P rRNA processing
GO:0034427 P nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
GO:0034475 P U4 snRNA 3'-end processing
GO:0035327 C euchromatin
GO:0043928 P exonucleolytic catabolism of deadenylated mRNA
GO:0045006 P DNA deamination
GO:0045190 P isotype switching
GO:0045830 P positive regulation of isotype switching
GO:0071034 P CUT catabolic process
GO:0071035 P nuclear polyadenylation-dependent rRNA catabolic process
GO:0071038 P nuclear polyadenylation-dependent tRNA catabolic process
GO:0071049 P nuclear mRNA surveillance
GO:0071051 P polyadenylation-dependent snoRNA 3'-end processing
FPKM:20.44 TPM:10.63
52 A_BomoMSG_c10063_g1_i1
313bp
 uncharacterized_protein_LOC101744804_isoform_X1_[Bombyx_mori]
FPKM:47.20 TPM:24.55
53 A_BomoMSG_c10063_g1_i2
518bp
 uncharacterized_protein_LOC101744804_isoform_X1_[Bombyx_mori]
FPKM:58.55 TPM:30.46
54 A_BomoMSG_c10064_g1_i1
347bp
 15-hydroxyprostaglandin_dehydrogenase_[NAD(+)]_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004957 F prostaglandin E receptor activity
GO:0005737 C cytoplasm
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006693 P prostaglandin metabolic process
GO:0007179 P transforming growth factor beta receptor signaling pathway
GO:0007565 P female pregnancy
GO:0007567 P parturition
GO:0008152 P metabolic process
GO:0016404 F 15-hydroxyprostaglandin dehydrogenase (NAD+) activity
GO:0016491 F oxidoreductase activity
GO:0030728 P ovulation
GO:0045786 P negative regulation of cell cycle
GO:0051287 F NAD binding
GO:0055114 P obsolete oxidation-reduction process
GO:0070403 F NAD+ binding
GO:0070493 P thrombin-activated receptor signaling pathway
GO:0097070 P ductus arteriosus closure
FPKM:1.52 TPM:0.79
55 A_BomoMSG_c10066_g1_i1
219bp
FPKM:1.68 TPM:0.87
56 A_BomoMSG_c10067_g1_i1
392bp
FPKM:1.49 TPM:0.77
57 A_BomoMSG_c10068_g1_i1
447bp
 nucleoredoxin_[Bombyx_mori]
FPKM:2.62 TPM:1.36
58 A_BomoMSG_c10069_g1_i1
456bp
FPKM:1.37 TPM:0.71
59 A_BomoMSG_c1006_g1_i1
297bp
FPKM:7.33 TPM:3.81
60 A_BomoMSG_c10072_g1_i1
341bp
FPKM:3.14 TPM:1.63
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