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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMSG_c10081_g1_i1
Scaffold_idBomo_Chr5
NCBI non-redundant
(nr)		Upf3_regulator_of_nonsense_transcripts-like_protein_B_[Bombyx_mori]
Ontology
GO:0000166 F nucleotide binding
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000398 P mRNA splicing, via spliceosome
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005487 F structural constituent of nuclear pore
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005815 C microtubule organizing center
GO:0005829 C cytosol
GO:0006369 P termination of RNA polymerase II transcription
GO:0006405 P RNA export from nucleus
GO:0006406 P mRNA export from nucleus
GO:0006810 P transport
GO:0031124 P mRNA 3'-end processing
GO:0035145 C exon-exon junction complex
GO:0044822 F RNA binding
GO:0045727 P positive regulation of translation
GO:0051028 P mRNA transport
Transcript
Level		FPKM:64.00 TPM:33.30
ORF EntryO_BomoMSG2109_complete:A_BomoMSG_c10081_g1_i1
Sequence
(Nucleotide)
TGTGACTTCGACCAAAATGTCAAAAAAGCTATACACGACGTATGATTATAAAATTATGTT
GAGTAATATATTGTTGAGCTAACGAAAATTCCATAAGAAATATGACTGAGGATCAAGATG
GTAAAGACTCACAGTCAGATTCGGGTTCCAAGACATTCATCAACAAGAGCAAGGACAAGA
AATCTAAGATACATCGTCCGTTGACAAAAATAATTCTTCGACGTTTACCGCCCACGATGA
CTGAGGAAACGTTTTTGGAGCAAGTATCGCCTATTCCAGAGCATGACTATTTTTATTTTG
CCAAACCGGACCCGACTTTGGGCAATAACCTATTTTCTAGAGCGTATATCAATTTCGTTA
ACGTGGAAGATATTTTTCTGTTCCGAGATAAATTTGACGGTTATGTTTTCTTAGATGAAA
AAGGTGGAGAATATGTAGGCATAGTTGAATATGCACCCTTCCAAAGAATTTCAAAGAAAA
AAAAGAAGAAAGATCCTAAATGTGGAACACTTGAGAGTGACCCAATTTATCAAGAGTTTA
TCGAGAGTCTGAACAAAGATCCTGAGGTTGAGAGCCAACCTAAACTAGAATATTCTTACC
CAATAAATGATGTTAGTGAAAAAAAAACACAATCAACACCTTTGCTGGAATATCTAGCCG
CACGTAAACTAGACAAGAGAGGTAGAGATGAACGTCGTAGGCGCGATAATGACAAGAGAA
AAATGAGAATTGAACGAAAAACAAAGGAAGGTCCTATCAAGGAAGAAGATAATGAGGATA
CAGAAGTAAGAAAAATTAAAACCAGAGAATCTGAGAAAGAGAAGAAAGATTCTAAAGAAG
ATCAAACAAAACTGGACGACGGGATGGTATTCGAATCTAAATCATACAAAGAACGTAAAC
CTAATTTAAAAATTGATAAAAAGAAGAAATCTGAAAACGATAGAATTGAAAAAGAGGACG
AAGTAGGAGATGATCTTGATGGGCAGAAAAAGGATAAACGCGAAAAAAATAAGATACAAG
AATCTCCACGTGAGCAAAAGAGTAAAAAATACAGCGACACTAGGAAAGAGAGAATCAAAC
AAAATGTTTTAATTACAAAATCTGAAAAAGAGTATGCTCTTTCGAAGCTCATATCTCTAT
GTCCCAAAAGTACTGCACTCAGTAATGATATTAAACCATTCACTCAACTGCCTCAAGTGA
AAACTGATGACTTATCCAAGATTATTGATGGAATGGATAAAAAAACAAAGCTTGAAGCAA
AAGAAGAAACGACACGAAACTCAAAAGATTCAGACAAAGTTGAGACTAAGAGTAATGTAC
GCAGAAATAGCCTTGACTCAAATAAAGCCACAAGCAATGATGAATCTGATTCAAAGAAAA
CAACCTTCGAAGAAAGACCAAAATCTTCGGAACGTGAAGGATCGGAAGAGAAAGAAAAAT
GTGACGGCGAACGTCGCGCTGAACGCAGAATAAGAAATAAGGATCGGCCCAGTCTCGTGA
TTTACCAGCCCGGCATGGGGAAGTTTAGTAAACAGCGTCTCGCGAAAGAAAAGGAAACGC
TCCCGACGAAAGTGAGCGACAGTGAAAAGAAAGACACTTGAAGATACGGTACTTTTCCCA
GTTATTGGACGACTTTAAACGGATATGACCTGAAACTGGCACTTGATGCATGTCCACGCG
GAGTCACTAAGGGAGGACATGAATATGCCAAACGAAGGAACAGCTGCTGTCGTGTTCATT
GAAGCCTGCCCTAATTGATTTGTTTAGTTTATATGCATTATAAATGAGTCGGAAATCTTC
AACATAAAAATTGAAATATACCATTCCTTGTTTTTGCCCTCTTGTTTATAGATTATGACC
GATTTAGTTCAGTTTGTTTATTTCAATAAAATATAATATTTTAATTGGGAAAAAAAAA
(1918 bp)

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