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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
4081 A_BomoMSG_c1433_g1_i1
226bp
FPKM:6.92 TPM:3.60
4082 A_BomoMSG_c14340_g1_i1
2009bp
 probable_splicing_factor,_arginine/serine-rich_7_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
FPKM:27.63 TPM:14.37
4083 A_BomoMSG_c14341_g1_i1
474bp
FPKM:3.70 TPM:1.92
4084 A_BomoMSG_c14342_g1_i1
451bp
 ribosomal_protein_L34_[Euphydryas_aurinia]
GO:0003735 F structural constituent of ribosome
GO:0005622 C intracellular anatomical structure
GO:0005840 C ribosome
GO:0006412 P translation
GO:0030529 C ribonucleoprotein complex
FPKM:2736.69 TPM:1423.68
4085 A_BomoMSG_c14343_g1_i1
612bp
 sterol_regulatory_element-binding_protein_cleavage-activating_protein_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0006629 P lipid metabolic process
GO:0008202 P steroid metabolic process
GO:0008203 P cholesterol metabolic process
GO:0012507 C ER to Golgi transport vesicle membrane
GO:0015485 F cholesterol binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0031410 C cytoplasmic vesicle
GO:0032933 P SREBP signaling pathway
FPKM:1.82 TPM:0.94
4086 A_BomoMSG_c14344_g1_i1
407bp
 rab3_GTPase-activating_protein_catalytic_subunit_isoform_X1_[Bombyx_mori]
GO:0005096 F GTPase activator activity
GO:0005737 C cytoplasm
GO:0043547 P positive regulation of GTPase activity
FPKM:7.70 TPM:4.00
4087 A_BomoMSG_c14345_g1_i1
240bp
 transformation/transcription_domain-associated_protein_[Bombyx_mori]
GO:0000125 C SAGA complex
GO:0000812 C Swr1 complex
GO:0003712 F transcription coregulator activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005794 C Golgi apparatus
GO:0006281 P DNA repair
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016568 P chromatin organization
GO:0016573 P histone acetylation
GO:0016578 P histone deubiquitination
GO:0016773 F phosphotransferase activity, alcohol group as acceptor
GO:0030914 C SAGA complex
GO:0033276 C transcription factor TFTC complex
GO:0035267 C NuA4 histone acetyltransferase complex
GO:0043967 P histone H4 acetylation
GO:0043968 P histone H2A acetylation
GO:1904837 P beta-catenin-TCF complex assembly
FPKM:7.22 TPM:3.76
4088 A_BomoMSG_c14346_g1_i1
276bp
FPKM:5.22 TPM:2.71
4089 A_BomoMSG_c14347_g1_i1
251bp
 uncharacterized_protein_LOC101737620_isoform_X3_[Bombyx_mori]
FPKM:3.53 TPM:1.84
4090 A_BomoMSG_c14348_g1_i1
686bp
 talin-1_[Bombyx_mori]
GO:0001726 C ruffle
GO:0002576 P platelet degranulation
GO:0003779 F actin binding
GO:0005178 F integrin binding
GO:0005200 F structural constituent of cytoskeleton
GO:0005515 F protein binding
GO:0005576 C extracellular region
GO:0005737 C cytoplasm
GO:0005815 C microtubule organizing center
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005911 C cell-cell junction
GO:0005925 C focal adhesion
GO:0006928 P movement of cell or subcellular component
GO:0006936 P muscle contraction
GO:0007016 P obsolete cytoskeletal anchoring at plasma membrane
GO:0007043 P cell-cell junction assembly
GO:0007044 P cell-substrate junction assembly
GO:0007155 P cell adhesion
GO:0009986 C cell surface
GO:0016020 C membrane
GO:0016032 P viral process
GO:0017166 F vinculin binding
GO:0030054 C cell junction
GO:0030274 F LIM domain binding
GO:0030866 P cortical actin cytoskeleton organization
GO:0032403 F protein-containing complex binding
GO:0032587 C ruffle membrane
GO:0036498 P IRE1-mediated unfolded protein response
GO:0042995 C cell projection
GO:0051015 F actin filament binding
GO:0070062 C extracellular exosome
GO:0070527 P platelet aggregation
FPKM:3.80 TPM:1.98
4091 A_BomoMSG_c14349_g1_i1
460bp
FPKM:2.90 TPM:1.51
4092 A_BomoMSG_c14349_g1_i2
389bp
FPKM:0.00 TPM:0.00
4093 A_BomoMSG_c1434_g1_i1
216bp
FPKM:0.87 TPM:0.45
4094 A_BomoMSG_c14350_g1_i1
293bp
FPKM:1.26 TPM:0.65
4095 A_BomoMSG_c14351_g1_i1
1174bp
 J_domain-containing_protein_[Bombyx_mori]
FPKM:30.40 TPM:15.82
4096 A_BomoMSG_c14352_g1_i1
201bp
FPKM:8.70 TPM:4.53
4097 A_BomoMSG_c14354_g1_i1
417bp
FPKM:6.51 TPM:3.39
4098 A_BomoMSG_c14355_g1_i1
204bp
 LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC101737452_[Bombyx_mori]
FPKM:6.23 TPM:3.24
4099 A_BomoMSG_c14356_g1_i1
340bp
 protein_GUCD1_isoform_X1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
FPKM:7.89 TPM:4.10
4100 A_BomoMSG_c14357_g1_i1
339bp
FPKM:9.52 TPM:4.95
4101 A_BomoMSG_c14358_g1_i1
2178bp
 viral_IAP-associated_factor_homolog_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005737 C cytoplasm
GO:0006915 P apoptotic process
GO:0008479 F queuine tRNA-ribosyltransferase activity
GO:0008616 P queuosine biosynthetic process
GO:0043281 P regulation of cysteine-type endopeptidase activity involved in apoptotic process
FPKM:27.81 TPM:14.47
4102 A_BomoMSG_c14359_g1_i1
524bp
FPKM:25.95 TPM:13.50
4103 A_BomoMSG_c1435_g1_i1
334bp
FPKM:2.93 TPM:1.53
4104 A_BomoMSG_c14360_g1_i1
215bp
FPKM:0.00 TPM:0.00
4105 A_BomoMSG_c14360_g2_i1
376bp
FPKM:1.59 TPM:0.83
4106 A_BomoMSG_c14361_g1_i1
319bp
FPKM:2.48 TPM:1.29
4107 A_BomoMSG_c14362_g1_i1
3012bp
 transmembrane_protein_214_isoform_X1_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0005881 C cytoplasmic microtubule
GO:0006915 P apoptotic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:86.69 TPM:45.10
4108 A_BomoMSG_c14362_g1_i2
2979bp
 transmembrane_protein_214_isoform_X2_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0005881 C cytoplasmic microtubule
GO:0006915 P apoptotic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:33.90 TPM:17.64
4109 A_BomoMSG_c14364_g1_i1
1144bp
 39S_ribosomal_protein_L19,_mitochondrial_[Bombyx_mori]
GO:0003735 F structural constituent of ribosome
GO:0005622 C intracellular anatomical structure
GO:0005739 C mitochondrion
GO:0005762 C mitochondrial large ribosomal subunit
GO:0005840 C ribosome
GO:0006412 P translation
GO:0019233 P sensory perception of pain
GO:0030529 C ribonucleoprotein complex
FPKM:28.89 TPM:15.03
4110 A_BomoMSG_c14365_g1_i1
310bp
FPKM:3.37 TPM:1.75
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