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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
4051 A_BomoMSG_c14307_g1_i1
482bp
FPKM:1.44 TPM:0.75
4052 A_BomoMSG_c14308_g1_i1
349bp
 TFIIB-related_factor_[Bombyx_mori]
GO:0000126 C transcription factor TFIIIB complex
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006352 P DNA-templated transcription, initiation
GO:0006355 P regulation of transcription, DNA-templated
GO:0006384 P transcription initiation from RNA polymerase III promoter
GO:0008270 F zinc ion binding
GO:0017025 F TBP-class protein binding
GO:0043488 P regulation of mRNA stability
GO:0046872 F metal ion binding
FPKM:1.81 TPM:0.94
4053 A_BomoMSG_c14309_g1_i1
1651bp
 eukaryotic_translation_initiation_factor_3_subunit_I_[Bombyx_mori]
GO:0001731 P formation of translation preinitiation complex
GO:0003743 F translation initiation factor activity
GO:0005737 C cytoplasm
GO:0005852 C eukaryotic translation initiation factor 3 complex
GO:0006412 P translation
GO:0006413 P translational initiation
GO:0006446 P regulation of translational initiation
GO:0016282 C eukaryotic 43S preinitiation complex
GO:0033290 C eukaryotic 48S preinitiation complex
FPKM:194.15 TPM:101.00
4054 A_BomoMSG_c1430_g1_i1
216bp
 PREDICTED:_Kv_channel-interacting_protein_4-like,_partial_[Papilio_polytes]
GO:0005244 F voltage-gated ion channel activity
GO:0005267 F potassium channel activity
GO:0005509 F calcium ion binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006813 P potassium ion transport
GO:0008076 C voltage-gated potassium channel complex
GO:0015459 F potassium channel regulator activity
GO:0016020 C membrane
GO:0034765 P regulation of ion transmembrane transport
GO:0046872 F metal ion binding
GO:0071805 P potassium ion transmembrane transport
GO:0072659 P protein localization to plasma membrane
GO:1901379 P regulation of potassium ion transmembrane transport
FPKM:1.75 TPM:0.91
4055 A_BomoMSG_c14310_g1_i1
1980bp
 sterol_carrier_protein_x_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005777 C peroxisome
GO:0006810 P transport
GO:0006869 P lipid transport
GO:0008152 P metabolic process
GO:0008289 F lipid binding
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0016747 F acyltransferase activity, transferring groups other than amino-acyl groups
GO:0033814 F propanoyl-CoA C-acyltransferase activity
FPKM:37.06 TPM:19.28
4056 A_BomoMSG_c14310_g1_i2
850bp
 sterol_carrier_protein_x_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005777 C peroxisome
GO:0006694 P steroid biosynthetic process
GO:0006810 P transport
GO:0006869 P lipid transport
GO:0008152 P metabolic process
GO:0008289 F lipid binding
GO:0015248 F sterol transporter activity
GO:0015914 P phospholipid transport
GO:0015918 P sterol transport
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0016747 F acyltransferase activity, transferring groups other than amino-acyl groups
GO:0032385 P positive regulation of intracellular cholesterol transport
GO:0032934 F sterol binding
GO:0033814 F propanoyl-CoA C-acyltransferase activity
GO:1901373 P lipid hydroperoxide transport
FPKM:63.72 TPM:33.15
4057 A_BomoMSG_c14311_g1_i1
1221bp
 sorbitol_dehydrogenase_[Bombyx_mori]
GO:0003939 F L-iditol 2-dehydrogenase activity
GO:0005615 C extracellular space
GO:0005739 C mitochondrion
GO:0005829 C cytosol
GO:0005929 C cilium
GO:0006006 P glucose metabolic process
GO:0006060 P sorbitol metabolic process
GO:0006062 P sorbitol catabolic process
GO:0006970 P response to osmotic stress
GO:0008270 F zinc ion binding
GO:0009725 P response to hormone
GO:0016020 C membrane
GO:0016491 F oxidoreductase activity
GO:0019640 P glucuronate catabolic process to xylulose 5-phosphate
GO:0030246 F carbohydrate binding
GO:0030317 P flagellated sperm motility
GO:0031514 C motile cilium
GO:0031667 P response to nutrient levels
GO:0031966 C mitochondrial membrane
GO:0042493 P response to xenobiotic stimulus
GO:0042802 F identical protein binding
GO:0042995 C cell projection
GO:0046370 P fructose biosynthetic process
GO:0046526 F D-xylulose reductase activity
GO:0046686 P response to cadmium ion
GO:0046688 P response to copper ion
GO:0046872 F metal ion binding
GO:0051160 P L-xylitol catabolic process
GO:0051164 P L-xylitol metabolic process
GO:0051287 F NAD binding
GO:0055114 P obsolete oxidation-reduction process
GO:0070062 C extracellular exosome
FPKM:16.38 TPM:8.52
4058 A_BomoMSG_c14313_g1_i1
1311bp
 dehydrodolichyl_diphosphate_synthase_isoform_X1_[Bombyx_mori]
GO:0002094 F polyprenyltransferase activity
GO:0005515 F protein binding
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006486 P protein glycosylation
GO:0006489 P dolichyl diphosphate biosynthetic process
GO:0016020 C membrane
GO:0016740 F transferase activity
GO:0016765 F transferase activity, transferring alkyl or aryl (other than methyl) groups
FPKM:29.84 TPM:15.52
4059 A_BomoMSG_c14314_g1_i1
1513bp
 NADH_dehydrogenase-ubiquinone_Fe-S_protein_2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0003954 F NADH dehydrogenase activity
GO:0005575 C cellular_component
GO:0005654 C nucleoplasm
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005747 C mitochondrial respiratory chain complex I
GO:0006979 P response to oxidative stress
GO:0008137 F NADH dehydrogenase (ubiquinone) activity
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0016491 F oxidoreductase activity
GO:0016651 F oxidoreductase activity, acting on NAD(P)H
GO:0031625 F ubiquitin protein ligase binding
GO:0046872 F metal ion binding
GO:0048038 F quinone binding
GO:0051287 F NAD binding
GO:0051536 F iron-sulfur cluster binding
GO:0051539 F 4 iron, 4 sulfur cluster binding
GO:0055114 P obsolete oxidation-reduction process
GO:0070469 C respirasome
FPKM:38.04 TPM:19.79
4060 A_BomoMSG_c14315_g1_i1
263bp
FPKM:4.75 TPM:2.47
4061 A_BomoMSG_c14316_g1_i1
1743bp
 endoplasmic_reticulum_oxidoreduction_1-like_precursor_[Bombyx_mori]
GO:0003756 F protein disulfide isomerase activity
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0016020 C membrane
GO:0016491 F oxidoreductase activity
GO:0016671 F oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor
GO:0051085 P chaperone cofactor-dependent protein refolding
GO:0055114 P obsolete oxidation-reduction process
FPKM:27.43 TPM:14.27
4062 A_BomoMSG_c14317_g1_i1
1680bp
 peptidyl-prolyl_cis-trans_isomerase_FKBP8_[Bombyx_mori]
GO:0000413 P protein peptidyl-prolyl isomerization
GO:0001708 P cell fate specification
GO:0003755 F peptidyl-prolyl cis-trans isomerase activity
GO:0005515 F protein binding
GO:0005528 F FK506 binding
GO:0005739 C mitochondrion
GO:0005740 C mitochondrial envelope
GO:0005789 C endoplasmic reticulum membrane
GO:0006457 P protein folding
GO:0006915 P apoptotic process
GO:0007224 P smoothened signaling pathway
GO:0008152 P metabolic process
GO:0009953 P dorsal/ventral pattern formation
GO:0010468 P regulation of gene expression
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016032 P viral process
GO:0016853 F isomerase activity
GO:0021904 P dorsal/ventral neural tube patterning
GO:0021915 P neural tube development
GO:0030176 C integral component of endoplasmic reticulum membrane
GO:0030510 P regulation of BMP signaling pathway
GO:0030513 P positive regulation of BMP signaling pathway
GO:0031966 C mitochondrial membrane
GO:0035264 P multicellular organism growth
GO:0035556 P intracellular signal transduction
GO:0042802 F identical protein binding
GO:0043010 P camera-type eye development
GO:0043066 P negative regulation of apoptotic process
GO:0046872 F metal ion binding
GO:0061077 P chaperone-mediated protein folding
FPKM:43.16 TPM:22.45
4063 A_BomoMSG_c14321_g1_i1
331bp
 uncharacterized_protein_LOC101737214_isoform_X4_[Bombyx_mori]
FPKM:3.64 TPM:1.90
4064 A_BomoMSG_c14322_g1_i1
333bp
FPKM:0.00 TPM:0.00
4065 A_BomoMSG_c14322_g1_i2
607bp
FPKM:5.24 TPM:2.73
4066 A_BomoMSG_c14323_g1_i1
240bp
FPKM:0.66 TPM:0.34
4067 A_BomoMSG_c14324_g1_i1
1237bp
 zinc_finger_protein_608_isoform_X2_[Bombyx_mori]
FPKM:2.37 TPM:1.23
4068 A_BomoMSG_c14326_g1_i1
356bp
FPKM:14.84 TPM:7.72
4069 A_BomoMSG_c14328_g1_i1
1096bp
 3-hydroxyacyl-CoA_dehydrogenase_[Bombyx_mori]
GO:0003857 F 3-hydroxyacyl-CoA dehydrogenase activity
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005759 C mitochondrial matrix
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006635 P fatty acid beta-oxidation
GO:0016491 F oxidoreductase activity
GO:0055114 P obsolete oxidation-reduction process
GO:0070403 F NAD+ binding
FPKM:39.71 TPM:20.66
4070 A_BomoMSG_c14328_g1_i2
674bp
 3-hydroxyacyl-CoA_dehydrogenase_[Bombyx_mori]
GO:0003857 F 3-hydroxyacyl-CoA dehydrogenase activity
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005759 C mitochondrial matrix
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006635 P fatty acid beta-oxidation
GO:0009725 P response to hormone
GO:0014823 P response to activity
GO:0016491 F oxidoreductase activity
GO:0032868 P response to insulin
GO:0042493 P response to xenobiotic stimulus
GO:0046676 P negative regulation of insulin secretion
GO:0055114 P obsolete oxidation-reduction process
GO:0070403 F NAD+ binding
FPKM:13.33 TPM:6.94
4071 A_BomoMSG_c14329_g1_i1
397bp
 WD_repeat-containing_and_planar_cell_polarity_effector_protein_fritz_isoform_X2_[Bombyx_mori]
GO:0001822 P kidney development
GO:0002093 P auditory receptor cell morphogenesis
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005929 C cilium
GO:0005930 C axoneme
GO:0005938 C cell cortex
GO:0007224 P smoothened signaling pathway
GO:0007399 P nervous system development
GO:0010762 P regulation of fibroblast migration
GO:0016020 C membrane
GO:0016324 C apical plasma membrane
GO:0016476 P regulation of embryonic cell shape
GO:0030030 P cell projection organization
GO:0032185 P septin cytoskeleton organization
GO:0032880 P regulation of protein localization
GO:0042384 P cilium assembly
GO:0042733 P embryonic digit morphogenesis
GO:0042995 C cell projection
GO:0043010 P camera-type eye development
GO:0044782 P cilium organization
GO:0045184 P establishment of protein localization
GO:0048568 P embryonic organ development
GO:0051893 P regulation of focal adhesion assembly
GO:0055123 P digestive system development
GO:0060021 P roof of mouth development
GO:0060271 P cilium assembly
GO:0060541 P respiratory system development
GO:0072358 P circulatory system development
GO:0090521 P glomerular visceral epithelial cell migration
GO:0097541 C axonemal basal plate
GO:1900027 P regulation of ruffle assembly
GO:2000114 P regulation of establishment of cell polarity
FPKM:1.46 TPM:0.76
4072 A_BomoMSG_c14330_g1_i1
392bp
FPKM:3.22 TPM:1.68
4073 A_BomoMSG_c14331_g1_i1
232bp
FPKM:4.30 TPM:2.24
4074 A_BomoMSG_c14332_g1_i1
622bp
 E3_ubiquitin-protein_ligase_MARCH6_[Bombyx_mori]
GO:0000835 C ER ubiquitin ligase complex
GO:0004842 F ubiquitin-protein transferase activity
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0008270 F zinc ion binding
GO:0010498 P proteasomal protein catabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0019899 F enzyme binding
GO:0030176 C integral component of endoplasmic reticulum membrane
GO:0031624 F ubiquitin conjugating enzyme binding
GO:0036503 P ERAD pathway
GO:0046872 F metal ion binding
GO:0070936 P protein K48-linked ubiquitination
GO:1904264 F ubiquitin protein ligase activity
GO:1990381 F ubiquitin-specific protease binding
FPKM:2.79 TPM:1.45
4075 A_BomoMSG_c14334_g1_i1
1079bp
 ribonuclease_H2_subunit_A_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004523 F RNA-DNA hybrid ribonuclease activity
GO:0006298 P mismatch repair
GO:0016070 P RNA metabolic process
GO:0016787 F hydrolase activity
GO:0032299 C ribonuclease H2 complex
GO:0043137 P DNA replication, removal of RNA primer
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
FPKM:40.09 TPM:20.86
4076 A_BomoMSG_c14335_g1_i1
438bp
FPKM:6.66 TPM:3.46
4077 A_BomoMSG_c14335_g2_i1
370bp
FPKM:3.54 TPM:1.84
4078 A_BomoMSG_c14336_g1_i1
294bp
FPKM:4.99 TPM:2.60
4079 A_BomoMSG_c14337_g1_i1
235bp
FPKM:6.93 TPM:3.60
4080 A_BomoMSG_c14339_g1_i1
658bp
 LOW_QUALITY_PROTEIN:_CREB-binding_protein_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000123 C histone acetyltransferase complex
GO:0000785 C chromatin
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000979 F RNA polymerase II core promoter sequence-specific DNA binding
GO:0001047 F core promoter sequence-specific DNA binding
GO:0001085 F RNA polymerase II-specific DNA-binding transcription factor binding
GO:0001102 F RNA polymerase II-specific DNA-binding transcription factor binding
GO:0001159 F cis-regulatory region sequence-specific DNA binding
GO:0001228 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0001666 P response to hypoxia
GO:0001756 P somitogenesis
GO:0001889 P liver development
GO:0001934 P positive regulation of protein phosphorylation
GO:0002039 F p53 binding
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0003684 F damaged DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003712 F transcription coregulator activity
GO:0003713 F transcription coactivator activity
GO:0003823 F antigen binding
GO:0004402 F histone acetyltransferase activity
GO:0004468 F lysine N-acetyltransferase activity, acting on acetyl phosphate as donor
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005667 C transcription regulator complex
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0006473 P protein acetylation
GO:0006475 P internal protein amino acid acetylation
GO:0006915 P apoptotic process
GO:0006990 P positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response
GO:0007049 P cell cycle
GO:0007219 P Notch signaling pathway
GO:0007507 P heart development
GO:0007519 P skeletal muscle tissue development
GO:0007613 P memory
GO:0007623 P circadian rhythm
GO:0008013 F beta-catenin binding
GO:0008022 F protein C-terminus binding
GO:0008134 F transcription factor binding
GO:0008270 F zinc ion binding
GO:0009749 P response to glucose
GO:0009887 P animal organ morphogenesis
GO:0010560 P positive regulation of glycoprotein biosynthetic process
GO:0010628 P positive regulation of gene expression
GO:0010942 P positive regulation of cell death
GO:0014070 P response to organic cyclic compound
GO:0014737 P positive regulation of muscle atrophy
GO:0016407 F acetyltransferase activity
GO:0016573 P histone acetylation
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0018076 P N-terminal peptidyl-lysine acetylation
GO:0018393 P internal peptidyl-lysine acetylation
GO:0019901 F protein kinase binding
GO:0030154 P cell differentiation
GO:0030183 P B cell differentiation
GO:0030220 P platelet formation
GO:0030307 P positive regulation of cell growth
GO:0030324 P lung development
GO:0031324 P negative regulation of cellular metabolic process
GO:0031325 P positive regulation of cellular metabolic process
GO:0031490 F chromatin DNA binding
GO:0032025 P response to cobalt ion
GO:0032092 P positive regulation of protein binding
GO:0032403 F protein-containing complex binding
GO:0032526 P response to retinoic acid
GO:0032967 P positive regulation of collagen biosynthetic process
GO:0032993 C protein-DNA complex
GO:0033160 P obsolete positive regulation of protein import into nucleus, translocation
GO:0033613 F DNA-binding transcription factor binding
GO:0034612 P response to tumor necrosis factor
GO:0034644 P cellular response to UV
GO:0035066 P positive regulation of histone acetylation
GO:0035257 F nuclear receptor binding
GO:0035259 F glucocorticoid receptor binding
GO:0035690 P cellular response to xenobiotic stimulus
GO:0035855 P megakaryocyte development
GO:0035984 P cellular response to trichostatin A
GO:0042493 P response to xenobiotic stimulus
GO:0042542 P response to hydrogen peroxide
GO:0042771 P intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator
GO:0042975 F peroxisome proliferator activated receptor binding
GO:0043154 P negative regulation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0043388 P positive regulation of DNA binding
GO:0043425 F bHLH transcription factor binding
GO:0043491 P protein kinase B signaling
GO:0043627 P response to estrogen
GO:0043923 P positive regulation by host of viral transcription
GO:0043966 P histone H3 acetylation
GO:0043967 P histone H4 acetylation
GO:0043969 P histone H2B acetylation
GO:0045444 P fat cell differentiation
GO:0045471 P response to ethanol
GO:0045727 P positive regulation of translation
GO:0045773 P positive regulation of axon extension
GO:0045793 P positive regulation of cell size
GO:0045862 P positive regulation of proteolysis
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046332 F SMAD binding
GO:0046872 F metal ion binding
GO:0048511 P rhythmic process
GO:0048565 P digestive tract development
GO:0050681 F androgen receptor binding
GO:0050714 P positive regulation of protein secretion
GO:0050821 P protein stabilization
GO:0051019 F mitogen-activated protein kinase binding
GO:0051059 F NF-kappaB binding
GO:0051091 P positive regulation of DNA-binding transcription factor activity
GO:0051216 P cartilage development
GO:0051592 P response to calcium ion
GO:0060177 P regulation of angiotensin metabolic process
GO:0060298 P positive regulation of sarcomere organization
GO:0060548 P negative regulation of cell death
GO:0060765 P regulation of androgen receptor signaling pathway
GO:0065004 P protein-DNA complex assembly
GO:0070301 P cellular response to hydrogen peroxide
GO:0070542 P response to fatty acid
GO:0071236 P cellular response to antibiotic
GO:0071300 P cellular response to retinoic acid
GO:0071320 P cellular response to cAMP
GO:0071333 P cellular response to glucose stimulus
GO:0071389 P cellular response to mineralocorticoid stimulus
GO:0071407 P cellular response to organic cyclic compound
GO:0071548 P response to dexamethasone
GO:0071549 P cellular response to dexamethasone stimulus
GO:0090043 P regulation of tubulin deacetylation
GO:0097157 F pre-mRNA intronic binding
GO:1901985 P positive regulation of protein acetylation
GO:1990090 P cellular response to nerve growth factor stimulus
GO:1990405 F protein antigen binding
GO:2000629 P negative regulation of miRNA metabolic process
FPKM:5.66 TPM:2.94
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