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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
3661 A_BomoMSG_c13955_g2_i1
249bp
 serine/threonine-protein_kinase_RIO1_[Bombyx_mori]
FPKM:45.57 TPM:23.71
3662 A_BomoMSG_c13956_g1_i1
2063bp
 translocating_chain-associated_membrane_protein_1_[Bombyx_mori]
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006810 P transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:152.16 TPM:79.16
3663 A_BomoMSG_c13956_g1_i2
1871bp
 translocating_chain-associated_membrane_protein_1_[Bombyx_mori]
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006810 P transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:458.41 TPM:238.48
3664 A_BomoMSG_c13957_g1_i1
360bp
FPKM:3.14 TPM:1.63
3665 A_BomoMSG_c13958_g1_i1
356bp
FPKM:8.44 TPM:4.39
3666 A_BomoMSG_c1395_g1_i1
299bp
 PREDICTED:_uncharacterized_protein_LOC106711187_[Papilio_machaon]
FPKM:2.41 TPM:1.25
3667 A_BomoMSG_c13962_g1_i1
247bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:1.83 TPM:0.95
3668 A_BomoMSG_c13963_g1_i1
201bp
FPKM:0.00 TPM:0.00
3669 A_BomoMSG_c13963_g1_i2
273bp
FPKM:5.34 TPM:2.78
3670 A_BomoMSG_c13963_g2_i1
315bp
FPKM:3.63 TPM:1.89
3671 A_BomoMSG_c13964_g1_i1
276bp
FPKM:1.42 TPM:0.74
3672 A_BomoMSG_c13965_g1_i1
424bp
FPKM:4.16 TPM:2.16
3673 A_BomoMSG_c13967_g1_i1
482bp
FPKM:7.94 TPM:4.13
3674 A_BomoMSG_c13968_g1_i1
392bp
FPKM:2.48 TPM:1.29
3675 A_BomoMSG_c13969_g1_i1
930bp
 BRISC_and_BRCA1-A_complex_member_1_isoform_X1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006302 P double-strand break repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0010212 P response to ionizing radiation
GO:0016568 P chromatin organization
GO:0031572 P mitotic G2 DNA damage checkpoint signaling
GO:0045739 P positive regulation of DNA repair
GO:0051301 P cell division
GO:0070531 C BRCA1-A complex
GO:0070536 P protein K63-linked deubiquitination
GO:0070552 C BRISC complex
FPKM:5.60 TPM:2.92
3676 A_BomoMSG_c1396_g1_i1
206bp
 uncharacterized_protein_LOC105842439_[Bombyx_mori]
FPKM:4.03 TPM:2.09
3677 A_BomoMSG_c13970_g1_i1
701bp
 cadherin-87A_[Bombyx_mori]
GO:0005509 F calcium ion binding
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0007155 P cell adhesion
GO:0007156 P homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016339 P calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0044331 P cell-cell adhesion mediated by cadherin
GO:0046872 F metal ion binding
FPKM:2.15 TPM:1.12
3678 A_BomoMSG_c13970_g1_i2
444bp
 cadherin-87A_[Bombyx_mori]
GO:0005509 F calcium ion binding
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0007155 P cell adhesion
GO:0007156 P homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016339 P calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0044331 P cell-cell adhesion mediated by cadherin
GO:0046872 F metal ion binding
FPKM:1.47 TPM:0.77
3679 A_BomoMSG_c13971_g1_i1
267bp
FPKM:7.14 TPM:3.71
3680 A_BomoMSG_c13973_g1_i1
260bp
FPKM:8.12 TPM:4.23
3681 A_BomoMSG_c13974_g1_i1
331bp
FPKM:2.32 TPM:1.21
3682 A_BomoMSG_c13975_g1_i1
233bp
FPKM:4.25 TPM:2.21
3683 A_BomoMSG_c13976_g1_i1
248bp
 copia_protein_[Lasius_niger]
FPKM:0.00 TPM:0.00
3684 A_BomoMSG_c13976_g1_i2
326bp
 copia_protein_[Lasius_niger]
FPKM:0.60 TPM:0.31
3685 A_BomoMSG_c13976_g1_i3
439bp
 copia_protein_[Lasius_niger]
GO:0003676 F nucleic acid binding
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:1.09 TPM:0.57
3686 A_BomoMSG_c13977_g1_i1
426bp
Uncharacterised_protein_[Chlamydia_trachomatis]
FPKM:2.39 TPM:1.24
3687 A_BomoMSG_c13978_g1_i1
469bp
 adenylate_kinase_isoenzyme_6_homolog_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004017 F adenylate kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0009267 P cellular response to starvation
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0016887 F ATP hydrolysis activity
GO:0046939 P nucleotide phosphorylation
FPKM:2.25 TPM:1.17
3688 A_BomoMSG_c13979_g1_i1
578bp
 PREDICTED:_bromodomain_and_WD_repeat-containing_protein_1_[Papilio_xuthus]
GO:0001932 P regulation of protein phosphorylation
GO:0005158 F insulin receptor binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006606 P protein import into nucleus
GO:0007010 P cytoskeleton organization
GO:0008284 P positive regulation of cell population proliferation
GO:0008286 P insulin receptor signaling pathway
GO:0008360 P regulation of cell shape
GO:0010800 P positive regulation of peptidyl-threonine phosphorylation
GO:0022604 P regulation of cell morphogenesis
GO:0033138 P positive regulation of peptidyl-serine phosphorylation
GO:0040008 P regulation of growth
GO:0043066 P negative regulation of apoptotic process
GO:0043568 P positive regulation of insulin-like growth factor receptor signaling pathway
GO:0045840 P positive regulation of mitotic nuclear division
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0070062 C extracellular exosome
GO:0070577 F lysine-acetylated histone binding
GO:2001237 P negative regulation of extrinsic apoptotic signaling pathway
FPKM:1.26 TPM:0.66
3689 A_BomoMSG_c1397_g1_i1
321bp
 probable_serine/threonine-protein_kinase_DDB_G0278901_isoform_X1_[Bombyx_mori]
FPKM:0.00 TPM:0.00
3690 A_BomoMSG_c1397_g1_i2
429bp
 probable_serine/threonine-protein_kinase_DDB_G0278901_isoform_X1_[Bombyx_mori]
FPKM:2.15 TPM:1.12
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