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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
3631 A_BomoMSG_c13928_g1_i1
272bp
FPKM:0.00 TPM:0.00
3632 A_BomoMSG_c13928_g1_i2
348bp
FPKM:0.61 TPM:0.32
3633 A_BomoMSG_c13929_g1_i1
1080bp
 UPF0653_protein_C607.02c_[Bombyx_mori]
FPKM:34.25 TPM:17.82
3634 A_BomoMSG_c1392_g1_i1
401bp
FPKM:5.49 TPM:2.86
3635 A_BomoMSG_c13930_g1_i1
220bp
FPKM:8.28 TPM:4.31
3636 A_BomoMSG_c13931_g1_i1
339bp
FPKM:3.49 TPM:1.81
3637 A_BomoMSG_c13932_g1_i1
658bp
FPKM:3.27 TPM:1.70
3638 A_BomoMSG_c13932_g1_i2
497bp
FPKM:0.05 TPM:0.03
3639 A_BomoMSG_c13933_g1_i1
586bp
 protein_I'm_not_dead_yet_isoform_X1_[Bombyx_mori]
GO:0005215 F transporter activity
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006814 P sodium ion transport
GO:0006848 P pyruvate transport
GO:0008340 P determination of adult lifespan
GO:0010889 P regulation of sequestering of triglyceride
GO:0015137 F citrate transmembrane transporter activity
GO:0015141 F succinate transmembrane transporter activity
GO:0015142 F tricarboxylic acid transmembrane transporter activity
GO:0015744 P succinate transport
GO:0015746 P citrate transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016323 C basolateral plasma membrane
GO:0035674 P tricarboxylic acid transmembrane transport
GO:0050833 F pyruvate transmembrane transporter activity
GO:0055085 P transmembrane transport
GO:0071422 P succinate transmembrane transport
GO:1901475 P pyruvate transmembrane transport
FPKM:3.57 TPM:1.86
3640 A_BomoMSG_c13935_g1_i1
281bp
FPKM:8.67 TPM:4.51
3641 A_BomoMSG_c13938_g1_i1
481bp
 hypothetical_protein_2_-_silkworm_transposon_mag
GO:0003676 F nucleic acid binding
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0046872 F metal ion binding
FPKM:1.99 TPM:1.04
3642 A_BomoMSG_c1393_g1_i1
458bp
FPKM:2.53 TPM:1.32
3643 A_BomoMSG_c13940_g1_i1
1089bp
 ribokinase-like_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004747 F ribokinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005975 P carbohydrate metabolic process
GO:0006014 P D-ribose metabolic process
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0016773 F phosphotransferase activity, alcohol group as acceptor
GO:0019303 P D-ribose catabolic process
GO:0046835 P carbohydrate phosphorylation
GO:0046872 F metal ion binding
GO:0070062 C extracellular exosome
FPKM:32.58 TPM:16.95
3644 A_BomoMSG_c13941_g1_i1
275bp
 coronin-2B_isoform_X2_[Bombyx_mori]
GO:0001772 C immunological synapse
GO:0001845 P phagolysosome assembly
GO:0001891 C phagocytic cup
GO:0003674 F molecular_function
GO:0003779 F actin binding
GO:0003785 F actin monomer binding
GO:0005575 C cellular_component
GO:0005737 C cytoplasm
GO:0005769 C early endosome
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005884 C actin filament
GO:0005886 C plasma membrane
GO:0005911 C cell-cell junction
GO:0005938 C cell cortex
GO:0006816 P calcium ion transport
GO:0006909 P phagocytosis
GO:0007015 P actin filament organization
GO:0008022 F protein C-terminus binding
GO:0008064 P regulation of actin polymerization or depolymerization
GO:0008092 F cytoskeletal protein binding
GO:0008150 P biological_process
GO:0008360 P regulation of cell shape
GO:0015629 C actin cytoskeleton
GO:0016020 C membrane
GO:0016477 P cell migration
GO:0030027 C lamellipodium
GO:0030036 P actin cytoskeleton organization
GO:0030217 P T cell differentiation
GO:0030335 P positive regulation of cell migration
GO:0030424 C axon
GO:0030595 P leukocyte chemotaxis
GO:0030670 C phagocytic vesicle membrane
GO:0030833 P regulation of actin filament polymerization
GO:0030864 C cortical actin cytoskeleton
GO:0031252 C cell leading edge
GO:0031339 P negative regulation of vesicle fusion
GO:0031410 C cytoplasmic vesicle
GO:0031589 P cell-substrate adhesion
GO:0032036 F myosin heavy chain binding
GO:0032796 P uropod organization
GO:0032956 P regulation of actin cytoskeleton organization
GO:0034097 P response to cytokine
GO:0038180 P nerve growth factor signaling pathway
GO:0042102 P positive regulation of T cell proliferation
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0043029 P T cell homeostasis
GO:0043234 C protein-containing complex
GO:0043320 P natural killer cell degranulation
GO:0043524 P negative regulation of neuron apoptotic process
GO:0043548 F phosphatidylinositol 3-kinase binding
GO:0044822 F RNA binding
GO:0045335 C phagocytic vesicle
GO:0048873 P homeostasis of number of cells within a tissue
GO:0050870 P positive regulation of T cell activation
GO:0050918 P positive chemotaxis
GO:0051015 F actin filament binding
GO:0051126 P negative regulation of actin nucleation
GO:0051279 P regulation of release of sequestered calcium ion into cytosol
GO:0061502 P early endosome to recycling endosome transport
GO:0070062 C extracellular exosome
GO:0071353 P cellular response to interleukin-4
FPKM:1.43 TPM:0.75
3645 A_BomoMSG_c13941_g1_i2
249bp
 coronin-2B_isoform_X2_[Bombyx_mori]
FPKM:0.60 TPM:0.31
3646 A_BomoMSG_c13942_g1_i1
672bp
 importin-11,_partial_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006610 P ribosomal protein import into nucleus
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0008536 F small GTPase binding
GO:0008565 F obsolete protein transporter activity
GO:0015031 P protein transport
GO:0042991 P obsolete transcription factor import into nucleus
FPKM:2.98 TPM:1.55
3647 A_BomoMSG_c13943_g1_i1
1129bp
 G_kinase-anchoring_protein_1_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005794 C Golgi apparatus
GO:0007165 P signal transduction
GO:0007199 P G protein-coupled receptor signaling pathway coupled to cGMP nucleotide second messenger
FPKM:2.88 TPM:1.50
3648 A_BomoMSG_c13943_g1_i2
1369bp
 G_kinase-anchoring_protein_1_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005794 C Golgi apparatus
GO:0007165 P signal transduction
GO:0007199 P G protein-coupled receptor signaling pathway coupled to cGMP nucleotide second messenger
FPKM:13.94 TPM:7.25
3649 A_BomoMSG_c13944_g1_i1
283bp
FPKM:4.95 TPM:2.57
3650 A_BomoMSG_c13945_g1_i1
552bp
FPKM:4.32 TPM:2.25
3651 A_BomoMSG_c13946_g1_i1
291bp
 Hermansky-Pudlak_syndrome_5_[Bombyx_mori]
FPKM:2.12 TPM:1.10
3652 A_BomoMSG_c13947_g1_i1
244bp
 probable_palmitoyltransferase_ZDHHC16_[Bombyx_mori]
FPKM:6.93 TPM:3.61
3653 A_BomoMSG_c13947_g2_i1
634bp
 probable_palmitoyltransferase_ZDHHC16_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0006915 P apoptotic process
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016409 F palmitoyltransferase activity
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0018345 P protein palmitoylation
GO:0019706 F protein-cysteine S-palmitoyltransferase activity
GO:0046872 F metal ion binding
FPKM:1.86 TPM:0.97
3654 A_BomoMSG_c13948_g1_i1
244bp
FPKM:2.52 TPM:1.31
3655 A_BomoMSG_c13949_g1_i1
264bp
FPKM:1.57 TPM:0.82
3656 A_BomoMSG_c1394_g1_i1
308bp
FPKM:4.55 TPM:2.37
3657 A_BomoMSG_c13950_g1_i1
388bp
 uncharacterized_protein_LOC101745877_isoform_X1_[Bombyx_mori]
FPKM:4.28 TPM:2.23
3658 A_BomoMSG_c13951_g1_i1
454bp
FPKM:3.55 TPM:1.85
3659 A_BomoMSG_c13954_g1_i1
427bp
 F-box_only_protein_32_isoform_X2_[Bombyx_mori]
GO:0003779 F actin binding
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0016567 P protein ubiquitination
GO:0019005 C SCF ubiquitin ligase complex
FPKM:4.98 TPM:2.59
3660 A_BomoMSG_c13955_g1_i1
1472bp
 serine/threonine-protein_kinase_RIO1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004674 F protein serine/threonine kinase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005654 C nucleoplasm
GO:0005829 C cytosol
GO:0006364 P rRNA processing
GO:0006468 P protein phosphorylation
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0046872 F metal ion binding
FPKM:40.49 TPM:21.06
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