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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
3601 A_BomoMSG_c13902_g1_i1
436bp
FPKM:3.56 TPM:1.85
3602 A_BomoMSG_c13904_g1_i1
221bp
 SET_and_MYND_domain-containing_protein_4_[Bombyx_mori]
FPKM:6.54 TPM:3.40
3603 A_BomoMSG_c13905_g1_i1
571bp
FPKM:2.99 TPM:1.55
3604 A_BomoMSG_c13906_g1_i1
736bp
FPKM:2.56 TPM:1.33
3605 A_BomoMSG_c13907_g1_i1
245bp
FPKM:3.74 TPM:1.95
3606 A_BomoMSG_c13908_g1_i1
410bp
 protein_angel_[Bombyx_mori]
FPKM:4.15 TPM:2.16
3607 A_BomoMSG_c13909_g1_i1
785bp
 zinc_finger_HIT_domain-containing_protein_1_[Bombyx_mori]
GO:0000182 F rDNA binding
GO:0000439 C transcription factor TFIIH core complex
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0006281 P DNA repair
GO:0006289 P nucleotide-excision repair
GO:0006294 P nucleotide-excision repair, preincision complex assembly
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006362 P transcription elongation from RNA polymerase I promoter
GO:0006364 P rRNA processing
GO:0006974 P cellular response to DNA damage stimulus
GO:0071480 P cellular response to gamma radiation
FPKM:15.30 TPM:7.96
3608 A_BomoMSG_c13909_g1_i2
974bp
 zinc_finger_HIT_domain-containing_protein_1_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000812 C Swr1 complex
GO:0003682 F chromatin binding
GO:0005634 C nucleus
GO:0031063 P regulation of histone deacetylation
GO:0031491 F nucleosome binding
GO:0042129 P regulation of T cell proliferation
GO:0042826 F histone deacetylase binding
GO:0043486 P histone exchange
GO:0046872 F metal ion binding
GO:0070317 P negative regulation of G0 to G1 transition
FPKM:13.43 TPM:6.99
3609 A_BomoMSG_c1390_g1_i1
389bp
FPKM:3.01 TPM:1.57
3610 A_BomoMSG_c13910_g1_i1
341bp
FPKM:4.71 TPM:2.45
3611 A_BomoMSG_c13911_g1_i1
2522bp
 hydroxyacyl-coenzyme_A_dehydrogenase_[Bombyx_mori]
GO:0000062 F fatty-acyl-CoA binding
GO:0003824 F catalytic activity
GO:0003857 F 3-hydroxyacyl-CoA dehydrogenase activity
GO:0003985 F acetyl-CoA C-acetyltransferase activity
GO:0003988 F acetyl-CoA C-acyltransferase activity
GO:0004300 F enoyl-CoA hydratase activity
GO:0005515 F protein binding
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006635 P fatty acid beta-oxidation
GO:0008152 P metabolic process
GO:0016491 F oxidoreductase activity
GO:0016507 C mitochondrial fatty acid beta-oxidation multienzyme complex
GO:0016508 F long-chain-enoyl-CoA hydratase activity
GO:0016509 F long-chain-3-hydroxyacyl-CoA dehydrogenase activity
GO:0016829 F lyase activity
GO:0032403 F protein-containing complex binding
GO:0032868 P response to insulin
GO:0035965 P cardiolipin acyl-chain remodeling
GO:0042493 P response to xenobiotic stimulus
GO:0042645 C mitochondrial nucleoid
GO:0051287 F NAD binding
GO:0055114 P obsolete oxidation-reduction process
FPKM:69.18 TPM:35.99
3612 A_BomoMSG_c13912_g1_i1
882bp
 translation_machinery-associated_protein_16_homolog_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
FPKM:24.21 TPM:12.60
3613 A_BomoMSG_c13913_g1_i1
245bp
FPKM:2.49 TPM:1.30
3614 A_BomoMSG_c13914_g1_i1
283bp
FPKM:6.30 TPM:3.28
3615 A_BomoMSG_c13915_g1_i1
442bp
FPKM:3.69 TPM:1.92
3616 A_BomoMSG_c13916_g1_i1
309bp
 LOW_QUALITY_PROTEIN:_kinesin-like_protein_KIF13A_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0000166 F nucleotide binding
GO:0000910 P cytokinesis
GO:0003777 F microtubule motor activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0005794 C Golgi apparatus
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005856 C cytoskeleton
GO:0005871 C kinesin complex
GO:0005874 C microtubule
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0007018 P microtubule-based movement
GO:0007049 P cell cycle
GO:0008017 F microtubule binding
GO:0008152 P metabolic process
GO:0008333 P endosome to lysosome transport
GO:0010008 C endosome membrane
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016887 F ATP hydrolysis activity
GO:0030496 C midbody
GO:0030705 P cytoskeleton-dependent intracellular transport
GO:0032438 P melanosome organization
GO:0032588 C trans-Golgi network membrane
GO:0035459 P vesicle cargo loading
GO:0043001 P Golgi to plasma membrane protein transport
GO:0051301 P cell division
GO:0072383 P plus-end-directed vesicle transport along microtubule
FPKM:3.01 TPM:1.57
3617 A_BomoMSG_c13917_g1_i1
327bp
 LOW_QUALITY_PROTEIN:_sarcalumenin_[Bombyx_mori]
FPKM:3.73 TPM:1.94
3618 A_BomoMSG_c13918_g1_i1
1730bp
 G_protein_pathway_suppressor_1_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0008180 C COP9 signalosome
GO:0010387 P COP9 signalosome assembly
GO:0010388 P protein deneddylation
FPKM:46.45 TPM:24.17
3619 A_BomoMSG_c13919_g1_i1
887bp
FPKM:2.11 TPM:1.10
3620 A_BomoMSG_c1391_g1_i1
383bp
FPKM:6.43 TPM:3.35
3621 A_BomoMSG_c13921_g1_i1
210bp
 Glutamate_[NMDA]_receptor_subunit_epsilon-2_[Papilio_xuthus]
GO:0000165 P MAPK cascade
GO:0004872 F signaling receptor activity
GO:0004970 F ionotropic glutamate receptor activity
GO:0004972 F NMDA glutamate receptor activity
GO:0005088 F guanyl-nucleotide exchange factor activity
GO:0005216 F ion channel activity
GO:0005234 F extracellularly glutamate-gated ion channel activity
GO:0005261 F cation channel activity
GO:0005515 F protein binding
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0007215 P glutamate receptor signaling pathway
GO:0007268 P chemical synaptic transmission
GO:0008104 P protein localization
GO:0009611 P response to wounding
GO:0014069 C postsynaptic density
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0017146 C NMDA selective glutamate receptor complex
GO:0030054 C cell junction
GO:0030165 F PDZ domain binding
GO:0033058 P directional locomotion
GO:0035235 P ionotropic glutamate receptor signaling pathway
GO:0042177 P negative regulation of protein catabolic process
GO:0042391 P regulation of membrane potential
GO:0043547 P positive regulation of GTPase activity
GO:0045202 C synapse
GO:0045211 C postsynaptic membrane
GO:0047485 F protein N-terminus binding
GO:0050885 P neuromuscular process controlling balance
GO:0060079 P excitatory postsynaptic potential
GO:0098655 P cation transmembrane transport
FPKM:0.00 TPM:0.00
3622 A_BomoMSG_c13921_g1_i2
329bp
 glutamate_receptor_ionotropic,_NMDA_2B_[Bombyx_mori]
GO:0001964 P startle response
GO:0004872 F signaling receptor activity
GO:0004970 F ionotropic glutamate receptor activity
GO:0004972 F NMDA glutamate receptor activity
GO:0005216 F ion channel activity
GO:0005234 F extracellularly glutamate-gated ion channel activity
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0008344 P adult locomotory behavior
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0017146 C NMDA selective glutamate receptor complex
GO:0030054 C cell junction
GO:0034220 P ion transmembrane transport
GO:0035235 P ionotropic glutamate receptor signaling pathway
GO:0045202 C synapse
GO:0045211 C postsynaptic membrane
GO:0050966 P detection of mechanical stimulus involved in sensory perception of pain
GO:0051930 P regulation of sensory perception of pain
GO:0060079 P excitatory postsynaptic potential
FPKM:1.00 TPM:0.52
3623 A_BomoMSG_c13922_g1_i1
583bp
 sulfite_oxidase_isoform_X2_[Bombyx_mori]
GO:0005739 C mitochondrion
GO:0005758 C mitochondrial intermembrane space
GO:0006790 P sulfur compound metabolic process
GO:0008482 F sulfite oxidase activity
GO:0016491 F oxidoreductase activity
GO:0020037 F heme binding
GO:0030151 F molybdenum ion binding
GO:0042128 P nitrate assimilation
GO:0046872 F metal ion binding
GO:0055114 P obsolete oxidation-reduction process
FPKM:11.07 TPM:5.76
3624 A_BomoMSG_c13923_g1_i1
577bp
 uncharacterized_protein_LOC101740358_isoform_X2_[Bombyx_mori]
GO:0005509 F calcium ion binding
GO:0005576 C extracellular region
GO:0005615 C extracellular space
FPKM:1.68 TPM:0.88
3625 A_BomoMSG_c13924_g1_i1
297bp
FPKM:4.07 TPM:2.12
3626 A_BomoMSG_c13925_g1_i1
283bp
FPKM:2.25 TPM:1.17
3627 A_BomoMSG_c13926_g1_i1
284bp
 hypothetical_protein_L798_11430,_partial_[Zootermopsis_nevadensis]
FPKM:0.00 TPM:0.00
3628 A_BomoMSG_c13927_g1_i1
504bp
 synaptojanin-1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004438 F phosphatidylinositol-3-phosphatase activity
GO:0004439 F phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity
GO:0004445 F inositol-polyphosphate 5-phosphatase activity
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005874 C microtubule
GO:0006661 P phosphatidylinositol biosynthetic process
GO:0006796 P phosphate-containing compound metabolic process
GO:0006836 P neurotransmitter transport
GO:0006897 P endocytosis
GO:0007612 P learning
GO:0016082 P synaptic vesicle priming
GO:0016191 P synaptic vesicle uncoating
GO:0016787 F hydrolase activity
GO:0030117 C membrane coat
GO:0030132 C clathrin coat of coated pit
GO:0034595 F phosphatidylinositol phosphate 5-phosphatase activity
GO:0034596 F phosphatidylinositol phosphate 4-phosphatase activity
GO:0036092 P phosphatidylinositol-3-phosphate biosynthetic process
GO:0042578 F phosphoric ester hydrolase activity
GO:0043647 P inositol phosphate metabolic process
GO:0043812 F phosphatidylinositol-4-phosphate phosphatase activity
GO:0043813 F phosphatidylinositol-3,5-bisphosphate 5-phosphatase activity
GO:0046488 P phosphatidylinositol metabolic process
GO:0046855 P inositol phosphate dephosphorylation
GO:0046856 P phosphatidylinositol dephosphorylation
GO:0048488 P synaptic vesicle endocytosis
GO:0048489 P synaptic vesicle transport
GO:0052629 F phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity
GO:0052658 F inositol-1,4,5-trisphosphate 5-phosphatase activity
GO:0052659 F inositol-1,3,4,5-tetrakisphosphate 5-phosphatase activity
GO:0097060 C synaptic membrane
GO:0098793 C presynapse
GO:1901632 P regulation of synaptic vesicle membrane organization
GO:1903390 P positive regulation of synaptic vesicle uncoating
GO:1904980 P positive regulation of endosome organization
FPKM:0.00 TPM:0.00
3629 A_BomoMSG_c13927_g1_i2
553bp
 synaptojanin-1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004438 F phosphatidylinositol-3-phosphatase activity
GO:0004439 F phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity
GO:0004445 F inositol-polyphosphate 5-phosphatase activity
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005874 C microtubule
GO:0006661 P phosphatidylinositol biosynthetic process
GO:0006796 P phosphate-containing compound metabolic process
GO:0006836 P neurotransmitter transport
GO:0006897 P endocytosis
GO:0007612 P learning
GO:0016082 P synaptic vesicle priming
GO:0016191 P synaptic vesicle uncoating
GO:0016787 F hydrolase activity
GO:0030117 C membrane coat
GO:0030132 C clathrin coat of coated pit
GO:0034595 F phosphatidylinositol phosphate 5-phosphatase activity
GO:0034596 F phosphatidylinositol phosphate 4-phosphatase activity
GO:0036092 P phosphatidylinositol-3-phosphate biosynthetic process
GO:0042578 F phosphoric ester hydrolase activity
GO:0043647 P inositol phosphate metabolic process
GO:0043812 F phosphatidylinositol-4-phosphate phosphatase activity
GO:0043813 F phosphatidylinositol-3,5-bisphosphate 5-phosphatase activity
GO:0046488 P phosphatidylinositol metabolic process
GO:0046855 P inositol phosphate dephosphorylation
GO:0046856 P phosphatidylinositol dephosphorylation
GO:0048488 P synaptic vesicle endocytosis
GO:0048489 P synaptic vesicle transport
GO:0052629 F phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity
GO:0052658 F inositol-1,4,5-trisphosphate 5-phosphatase activity
GO:0052659 F inositol-1,3,4,5-tetrakisphosphate 5-phosphatase activity
GO:0097060 C synaptic membrane
GO:0098793 C presynapse
GO:1901632 P regulation of synaptic vesicle membrane organization
GO:1903390 P positive regulation of synaptic vesicle uncoating
GO:1904980 P positive regulation of endosome organization
FPKM:0.00 TPM:0.00
3630 A_BomoMSG_c13927_g1_i3
613bp
 synaptojanin-1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004438 F phosphatidylinositol-3-phosphatase activity
GO:0004439 F phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity
GO:0004445 F inositol-polyphosphate 5-phosphatase activity
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005874 C microtubule
GO:0006661 P phosphatidylinositol biosynthetic process
GO:0006796 P phosphate-containing compound metabolic process
GO:0006836 P neurotransmitter transport
GO:0006897 P endocytosis
GO:0007612 P learning
GO:0016082 P synaptic vesicle priming
GO:0016191 P synaptic vesicle uncoating
GO:0016787 F hydrolase activity
GO:0030117 C membrane coat
GO:0030132 C clathrin coat of coated pit
GO:0034595 F phosphatidylinositol phosphate 5-phosphatase activity
GO:0034596 F phosphatidylinositol phosphate 4-phosphatase activity
GO:0036092 P phosphatidylinositol-3-phosphate biosynthetic process
GO:0042578 F phosphoric ester hydrolase activity
GO:0043647 P inositol phosphate metabolic process
GO:0043812 F phosphatidylinositol-4-phosphate phosphatase activity
GO:0043813 F phosphatidylinositol-3,5-bisphosphate 5-phosphatase activity
GO:0046488 P phosphatidylinositol metabolic process
GO:0046855 P inositol phosphate dephosphorylation
GO:0046856 P phosphatidylinositol dephosphorylation
GO:0048488 P synaptic vesicle endocytosis
GO:0048489 P synaptic vesicle transport
GO:0052629 F phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity
GO:0052658 F inositol-1,4,5-trisphosphate 5-phosphatase activity
GO:0052659 F inositol-1,3,4,5-tetrakisphosphate 5-phosphatase activity
GO:0097060 C synaptic membrane
GO:0098793 C presynapse
GO:1901632 P regulation of synaptic vesicle membrane organization
GO:1903390 P positive regulation of synaptic vesicle uncoating
GO:1904980 P positive regulation of endosome organization
FPKM:2.72 TPM:1.41
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