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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
3571 A_BomoMSG_c13877_g1_i1
2225bp
 Ef1alpha-like_factor_isoform_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0002184 P cytoplasmic translational termination
GO:0003747 F translation release factor activity
GO:0003924 F GTPase activity
GO:0005525 F GTP binding
GO:0005829 C cytosol
GO:0006412 P translation
GO:0006479 P protein methylation
GO:0018444 C translation release factor complex
GO:0044822 F RNA binding
FPKM:134.52 TPM:69.98
3572 A_BomoMSG_c13877_g1_i2
2027bp
 Ef1alpha-like_factor_isoform_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0002184 P cytoplasmic translational termination
GO:0003747 F translation release factor activity
GO:0003924 F GTPase activity
GO:0005525 F GTP binding
GO:0005829 C cytosol
GO:0006412 P translation
GO:0006479 P protein methylation
GO:0018444 C translation release factor complex
GO:0044822 F RNA binding
FPKM:61.01 TPM:31.74
3573 A_BomoMSG_c13877_g1_i3
2204bp
 Ef1alpha-like_factor_isoform_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0002184 P cytoplasmic translational termination
GO:0003747 F translation release factor activity
GO:0003924 F GTPase activity
GO:0005525 F GTP binding
GO:0005829 C cytosol
GO:0006412 P translation
GO:0006479 P protein methylation
GO:0018444 C translation release factor complex
GO:0044822 F RNA binding
FPKM:7.10 TPM:3.69
3574 A_BomoMSG_c13878_g1_i1
267bp
 probable_ATP-dependent_RNA_helicase_DHX34_[Bombyx_mori]
FPKM:4.08 TPM:2.12
3575 A_BomoMSG_c13879_g1_i1
231bp
FPKM:4.35 TPM:2.26
3576 A_BomoMSG_c1387_g1_i1
232bp
 LOW_QUALITY_PROTEIN:_notch-like_protein_isoform_X1_[Bombyx_mori]
GO:0004871 F obsolete signal transducer activity
GO:0004888 F transmembrane signaling receptor activity
GO:0004930 F G protein-coupled receptor activity
GO:0005509 F calcium ion binding
GO:0005886 C plasma membrane
GO:0007165 P signal transduction
GO:0007166 P cell surface receptor signaling pathway
GO:0007186 P G protein-coupled receptor signaling pathway
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0031410 C cytoplasmic vesicle
GO:0046983 F protein dimerization activity
FPKM:2.87 TPM:1.49
3577 A_BomoMSG_c13880_g1_i1
522bp
 CG10993-like_protein_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000447 P endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000472 P endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000480 P endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0034462 P small-subunit processome assembly
GO:0042254 P ribosome biogenesis
FPKM:0.00 TPM:0.00
3578 A_BomoMSG_c13880_g1_i2
731bp
 CG10993-like_protein_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000447 P endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000472 P endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000480 P endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0034462 P small-subunit processome assembly
GO:0042254 P ribosome biogenesis
FPKM:25.67 TPM:13.35
3579 A_BomoMSG_c13881_g1_i1
346bp
FPKM:6.42 TPM:3.34
3580 A_BomoMSG_c13882_g1_i1
594bp
 PREDICTED:_facilitated_trehalose_transporter_Tret1-like_isoform_X1_[Amyelois_transitella]
GO:0005215 F transporter activity
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0008643 P carbohydrate transport
GO:0015574 F trehalose transmembrane transporter activity
GO:0015767 P lactose transport
GO:0015768 P maltose transport
GO:0015770 P sucrose transport
GO:0015771 P trehalose transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022857 F transmembrane transporter activity
GO:0022891 F transmembrane transporter activity
GO:0055085 P transmembrane transport
FPKM:0.00 TPM:0.00
3581 A_BomoMSG_c13882_g1_i2
768bp
 PREDICTED:_facilitated_trehalose_transporter_Tret1-like_isoform_X1_[Amyelois_transitella]
GO:0005215 F transporter activity
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0008643 P carbohydrate transport
GO:0015574 F trehalose transmembrane transporter activity
GO:0015767 P lactose transport
GO:0015768 P maltose transport
GO:0015770 P sucrose transport
GO:0015771 P trehalose transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022857 F transmembrane transporter activity
GO:0022891 F transmembrane transporter activity
GO:0055085 P transmembrane transport
FPKM:1.26 TPM:0.66
3582 A_BomoMSG_c13883_g1_i1
1268bp
 proteasome_subunit_alpha_type-1_[Bombyx_mori]
GO:0000502 C proteasome complex
GO:0001530 F lipopolysaccharide binding
GO:0002376 P immune system process
GO:0002479 P antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent
GO:0002862 P negative regulation of inflammatory response to antigenic stimulus
GO:0004175 F endopeptidase activity
GO:0004298 F threonine-type endopeptidase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005829 C cytosol
GO:0005839 C proteasome core complex
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0008233 F peptidase activity
GO:0016787 F hydrolase activity
GO:0019773 C proteasome core complex, alpha-subunit complex
GO:0051603 P proteolysis involved in cellular protein catabolic process
GO:0070062 C extracellular exosome
FPKM:30.95 TPM:16.10
3583 A_BomoMSG_c13884_g1_i1
840bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:2.00 TPM:1.04
3584 A_BomoMSG_c13885_g1_i1
378bp
FPKM:2.63 TPM:1.37
3585 A_BomoMSG_c13886_g1_i1
346bp
FPKM:16.21 TPM:8.43
3586 A_BomoMSG_c13888_g1_i1
613bp
FPKM:3.36 TPM:1.75
3587 A_BomoMSG_c13889_g1_i1
2219bp
 putative_leucine-rich_repeat-containing_protein_DDB_G0290503_[Bombyx_mori]
GO:0000137 C Golgi cis cisterna
GO:0000139 C Golgi membrane
GO:0000922 C spindle pole
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005801 C cis-Golgi network
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0006486 P protein glycosylation
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0007020 P microtubule nucleation
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0007092 P positive regulation of ubiquitin protein ligase activity
GO:0008017 F microtubule binding
GO:0008356 P asymmetric cell division
GO:0010507 P negative regulation of autophagy
GO:0016020 C membrane
GO:0019901 F protein kinase binding
GO:0019905 F syntaxin binding
GO:0030134 C COPII-coated ER to Golgi transport vesicle
GO:0032091 P negative regulation of protein binding
GO:0032580 C Golgi cisterna membrane
GO:0033116 C endoplasmic reticulum-Golgi intermediate compartment membrane
GO:0048208 P COPII vesicle coating
GO:0051225 P spindle assembly
GO:0051289 P protein homotetramerization
GO:0051297 P centrosome cycle
GO:0051301 P cell division
GO:0060050 P positive regulation of protein glycosylation
GO:0061676 F importin-alpha family protein binding
GO:0072686 C mitotic spindle
GO:0090161 P Golgi ribbon formation
GO:0090166 P Golgi disassembly
GO:0090306 P meiotic spindle assembly
GO:0090307 P mitotic spindle assembly
FPKM:38.54 TPM:20.05
3588 A_BomoMSG_c13890_g1_i1
336bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_arginine-glutamic_acid_dipeptide_repeats_protein_[Papilio_machaon]
FPKM:0.00 TPM:0.00
3589 A_BomoMSG_c13890_g1_i2
405bp
 atrophin-1-like_[Bombyx_mori]
FPKM:2.82 TPM:1.47
3590 A_BomoMSG_c13890_g1_i3
272bp
 atrophin-1-like_[Bombyx_mori]
FPKM:0.00 TPM:0.00
3591 A_BomoMSG_c13891_g1_i1
255bp
FPKM:2.27 TPM:1.18
3592 A_BomoMSG_c13893_g1_i1
388bp
FPKM:2.52 TPM:1.31
3593 A_BomoMSG_c13894_g1_i1
542bp
FPKM:1.68 TPM:0.87
3594 A_BomoMSG_c13895_g1_i1
217bp
FPKM:2.58 TPM:1.34
3595 A_BomoMSG_c13897_g1_i1
217bp
FPKM:4.31 TPM:2.24
3596 A_BomoMSG_c13898_g1_i1
686bp
 LOW_QUALITY_PROTEIN:_gastrula_zinc_finger_protein_XlCGF49.1_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
FPKM:2.46 TPM:1.28
3597 A_BomoMSG_c13899_g1_i1
324bp
FPKM:5.86 TPM:3.05
3598 A_BomoMSG_c1389_g1_i1
230bp
FPKM:2.20 TPM:1.14
3599 A_BomoMSG_c13900_g1_i1
497bp
 protein_groucho_isoform_X4_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0001106 F transcription corepressor activity
GO:0003677 F DNA binding
GO:0003714 F transcription corepressor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007015 P actin filament organization
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0007541 P sex determination, primary response to X:A ratio
GO:0008134 F transcription factor binding
GO:0016055 P Wnt signaling pathway
GO:0030154 P cell differentiation
GO:0030178 P negative regulation of Wnt signaling pathway
GO:0043234 C protein-containing complex
GO:0045879 P negative regulation of smoothened signaling pathway
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046331 P lateral inhibition
GO:0048813 P dendrite morphogenesis
GO:0070491 F DNA-binding transcription factor binding
GO:0071837 F HMG box domain binding
GO:0071906 F CRD domain binding
GO:0090090 P negative regulation of canonical Wnt signaling pathway
FPKM:3.63 TPM:1.89
3600 A_BomoMSG_c13901_g1_i1
693bp
FPKM:1.88 TPM:0.98
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