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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
3541 A_BomoMSG_c13849_g1_i1
307bp
FPKM:2.67 TPM:1.39
3542 A_BomoMSG_c1384_g1_i1
255bp
FPKM:5.10 TPM:2.65
3543 A_BomoMSG_c13850_g1_i1
578bp
 polyribonucleotide_nucleotidyltransferase_1,_mitochondrial_[Bombyx_mori]
GO:0000175 F 3'-5'-exoribonuclease activity
GO:0000957 P mitochondrial RNA catabolic process
GO:0000958 P mitochondrial mRNA catabolic process
GO:0000962 P positive regulation of mitochondrial RNA catabolic process
GO:0000964 P mitochondrial RNA 5'-end processing
GO:0000965 P mitochondrial RNA 3'-end processing
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0004654 F polyribonucleotide nucleotidyltransferase activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005758 C mitochondrial intermembrane space
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0006401 P RNA catabolic process
GO:0006402 P mRNA catabolic process
GO:0006810 P transport
GO:0008266 F poly(U) RNA binding
GO:0016020 C membrane
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0034046 F poly(G) binding
GO:0034599 P cellular response to oxidative stress
GO:0035198 F miRNA binding
GO:0035458 P cellular response to interferon-beta
GO:0035927 P RNA import into mitochondrion
GO:0035928 P rRNA import into mitochondrion
GO:0043457 P regulation of cellular respiration
GO:0043631 P RNA polyadenylation
GO:0044822 F RNA binding
GO:0045025 C mitochondrial degradosome
GO:0045926 P negative regulation of growth
GO:0051260 P protein homooligomerization
GO:0061014 P positive regulation of mRNA catabolic process
GO:0070207 P protein homotrimerization
GO:0070584 P mitochondrion morphogenesis
GO:0071042 P nuclear polyadenylation-dependent mRNA catabolic process
GO:0071850 P regulation of cell cycle
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
GO:0097222 P mitochondrial mRNA polyadenylation
GO:2000627 P positive regulation of miRNA catabolic process
GO:2000772 P regulation of cellular senescence
FPKM:1.96 TPM:1.02
3544 A_BomoMSG_c13851_g1_i1
292bp
FPKM:3.79 TPM:1.97
3545 A_BomoMSG_c13852_g1_i1
385bp
FPKM:7.91 TPM:4.11
3546 A_BomoMSG_c13854_g1_i1
469bp
FPKM:4.13 TPM:2.15
3547 A_BomoMSG_c13856_g1_i1
261bp
 PREDICTED:_exportin-5-like_[Plutella_xylostella]
FPKM:3.76 TPM:1.96
3548 A_BomoMSG_c13857_g1_i1
313bp
FPKM:2.21 TPM:1.15
3549 A_BomoMSG_c13857_g1_i2
236bp
FPKM:0.00 TPM:0.00
3550 A_BomoMSG_c13858_g1_i1
860bp
 ubiquitin_carboxyl-terminal_hydrolase_34_[Bombyx_mori]
GO:0000124 C SAGA complex
GO:0004197 F cysteine-type endopeptidase activity
GO:0004843 F thiol-dependent deubiquitinase
GO:0006355 P regulation of transcription, DNA-templated
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0016055 P Wnt signaling pathway
GO:0016578 P histone deubiquitination
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0036459 F thiol-dependent deubiquitinase
GO:0071108 P protein K48-linked deubiquitination
GO:0090263 P positive regulation of canonical Wnt signaling pathway
FPKM:2.28 TPM:1.18
3551 A_BomoMSG_c13859_g1_i1
530bp
 DNA_topoisomerase_3-beta-1_[Bombyx_mori]
GO:0000793 C condensed chromosome
GO:0003677 F DNA binding
GO:0003916 F DNA topoisomerase activity
GO:0003917 F DNA topoisomerase type I (single strand cut, ATP-independent) activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006265 P DNA topological change
GO:0007059 P chromosome segregation
GO:0016853 F isomerase activity
GO:0044822 F RNA binding
FPKM:7.25 TPM:3.77
3552 A_BomoMSG_c1385_g1_i1
241bp
FPKM:1.30 TPM:0.68
3553 A_BomoMSG_c13860_g1_i1
793bp
 peroxisomal_membrane_protein_PMP22_isoform_X1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0044351 P macropinocytosis
FPKM:16.57 TPM:8.62
3554 A_BomoMSG_c13860_g1_i2
934bp
 peroxisomal_membrane_protein_PMP22_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0044351 P macropinocytosis
FPKM:28.50 TPM:14.83
3555 A_BomoMSG_c13861_g1_i1
540bp
FPKM:2.16 TPM:1.12
3556 A_BomoMSG_c13861_g2_i1
393bp
FPKM:1.73 TPM:0.90
3557 A_BomoMSG_c13862_g1_i1
490bp
 endonuclease_and_reverse_transcriptase-like_protein_[Bombyx_mori]
FPKM:2.47 TPM:1.28
3558 A_BomoMSG_c13863_g1_i1
2175bp
 exuperantia_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0007275 P multicellular organism development
FPKM:56.25 TPM:29.26
3559 A_BomoMSG_c13864_g1_i1
259bp
 PREDICTED:_uncharacterized_protein_LOC106138248_[Amyelois_transitella]
FPKM:2.73 TPM:1.42
3560 A_BomoMSG_c13865_g1_i1
247bp
FPKM:9.78 TPM:5.09
3561 A_BomoMSG_c13866_g1_i1
374bp
FPKM:2.94 TPM:1.53
3562 A_BomoMSG_c13869_g1_i1
221bp
FPKM:8.18 TPM:4.25
3563 A_BomoMSG_c1386_g1_i1
358bp
 protein_MLP1_isoform_X3_[Bombyx_mori]
GO:0000132 P establishment of mitotic spindle orientation
GO:0000139 C Golgi membrane
GO:0000922 C spindle pole
GO:0005198 F structural molecule activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005819 C spindle
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0005876 C spindle microtubule
GO:0005938 C cell cortex
GO:0006997 P nucleus organization
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0008017 F microtubule binding
GO:0016363 C nuclear matrix
GO:0030425 C dendrite
GO:0043025 C neuronal cell body
GO:0045177 C apical part of cell
GO:0051301 P cell division
GO:0051321 P meiotic cell cycle
GO:0060487 P lung epithelial cell differentiation
GO:0061673 C mitotic spindle astral microtubule
GO:0070062 C extracellular exosome
GO:0072686 C mitotic spindle
GO:0097431 C mitotic spindle pole
FPKM:2.59 TPM:1.35
3564 A_BomoMSG_c13870_g1_i1
671bp
FPKM:294.53 TPM:153.22
3565 A_BomoMSG_c13871_g1_i1
1269bp
FPKM:43.39 TPM:22.57
3566 A_BomoMSG_c13872_g1_i1
1226bp
FPKM:32.05 TPM:16.67
3567 A_BomoMSG_c13873_g1_i1
236bp
FPKM:4.80 TPM:2.50
3568 A_BomoMSG_c13874_g1_i1
442bp
 zinc_finger_protein_91_isoform_X1_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0046872 F metal ion binding
FPKM:1.85 TPM:0.96
3569 A_BomoMSG_c13875_g1_i1
674bp
 ethanolaminephosphotransferase_1_[Bombyx_mori]
GO:0004307 F ethanolaminephosphotransferase activity
GO:0005789 C endoplasmic reticulum membrane
GO:0006629 P lipid metabolic process
GO:0006646 P phosphatidylethanolamine biosynthetic process
GO:0008654 P phospholipid biosynthetic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0016780 F phosphotransferase activity, for other substituted phosphate groups
GO:0046872 F metal ion binding
GO:1903955 P positive regulation of protein targeting to mitochondrion
FPKM:2.06 TPM:1.07
3570 A_BomoMSG_c13876_g1_i1
266bp
 craniofacial_development_protein_2-like_[Helicoverpa_armigera]
FPKM:0.51 TPM:0.27
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