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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
3511 A_BomoMSG_c13822_g1_i1
211bp
FPKM:4.68 TPM:2.43
3512 A_BomoMSG_c13823_g1_i1
211bp
FPKM:0.94 TPM:0.49
3513 A_BomoMSG_c13823_g1_i2
240bp
FPKM:0.00 TPM:0.00
3514 A_BomoMSG_c13824_g1_i1
491bp
FPKM:3.87 TPM:2.01
3515 A_BomoMSG_c13825_g1_i1
534bp
FPKM:5.15 TPM:2.68
3516 A_BomoMSG_c13826_g1_i1
873bp
FPKM:18.97 TPM:9.87
3517 A_BomoMSG_c13827_g1_i1
506bp
FPKM:3.20 TPM:1.66
3518 A_BomoMSG_c13828_g1_i1
668bp
 autophagy_related_protein_Atg8_[Bombyx_mori]
GO:0000045 P autophagosome assembly
GO:0000139 C Golgi membrane
GO:0000226 P microtubule cytoskeleton organization
GO:0000421 C autophagosome membrane
GO:0000422 P autophagy of mitochondrion
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005764 C lysosome
GO:0005776 C autophagosome
GO:0005790 C smooth endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0005875 C microtubule associated complex
GO:0005886 C plasma membrane
GO:0005930 C axoneme
GO:0006810 P transport
GO:0006914 P autophagy
GO:0006915 P apoptotic process
GO:0006995 P cellular response to nitrogen starvation
GO:0008017 F microtubule binding
GO:0008625 P extrinsic apoptotic signaling pathway via death domain receptors
GO:0012505 C endomembrane system
GO:0015031 P protein transport
GO:0015629 C actin cytoskeleton
GO:0016020 C membrane
GO:0031410 C cytoplasmic vesicle
GO:0031625 F ubiquitin protein ligase binding
GO:0044297 C cell body
GO:0048471 C perinuclear region of cytoplasm
GO:0048487 F beta-tubulin binding
GO:0050811 F GABA receptor binding
GO:0097225 C sperm midpiece
FPKM:54.48 TPM:28.34
3519 A_BomoMSG_c13828_g1_i2
816bp
 autophagy_related_protein_Atg8_[Bombyx_mori]
GO:0000045 P autophagosome assembly
GO:0000139 C Golgi membrane
GO:0000226 P microtubule cytoskeleton organization
GO:0000421 C autophagosome membrane
GO:0000422 P autophagy of mitochondrion
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005764 C lysosome
GO:0005776 C autophagosome
GO:0005790 C smooth endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0005875 C microtubule associated complex
GO:0005886 C plasma membrane
GO:0005930 C axoneme
GO:0006810 P transport
GO:0006914 P autophagy
GO:0006915 P apoptotic process
GO:0006995 P cellular response to nitrogen starvation
GO:0008017 F microtubule binding
GO:0008625 P extrinsic apoptotic signaling pathway via death domain receptors
GO:0012505 C endomembrane system
GO:0015031 P protein transport
GO:0015629 C actin cytoskeleton
GO:0016020 C membrane
GO:0031410 C cytoplasmic vesicle
GO:0031625 F ubiquitin protein ligase binding
GO:0044297 C cell body
GO:0048471 C perinuclear region of cytoplasm
GO:0048487 F beta-tubulin binding
GO:0050811 F GABA receptor binding
GO:0097225 C sperm midpiece
FPKM:1866.25 TPM:970.86
3520 A_BomoMSG_c13829_g1_i1
505bp
 LOW_QUALITY_PROTEIN:_protein_son_of_sevenless_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005088 F guanyl-nucleotide exchange factor activity
GO:0005089 F guanyl-nucleotide exchange factor activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0007015 P actin filament organization
GO:0007264 P small GTPase mediated signal transduction
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0007426 P tracheal outgrowth, open tracheal system
GO:0007480 P imaginal disc-derived leg morphogenesis
GO:0008293 P torso signaling pathway
GO:0008360 P regulation of cell shape
GO:0008595 P anterior/posterior axis specification, embryo
GO:0016199 P axon midline choice point recognition
GO:0030154 P cell differentiation
GO:0030676 F guanyl-nucleotide exchange factor activity
GO:0031234 C extrinsic component of cytoplasmic side of plasma membrane
GO:0035022 P positive regulation of Rac protein signal transduction
GO:0035023 P regulation of Rho protein signal transduction
GO:0043547 P positive regulation of GTPase activity
GO:0045500 P sevenless signaling pathway
GO:0046579 P positive regulation of Ras protein signal transduction
GO:0046982 F protein heterodimerization activity
GO:2000134 P negative regulation of G1/S transition of mitotic cell cycle
FPKM:2.87 TPM:1.49
3521 A_BomoMSG_c13830_g1_i1
220bp
 THAP_domain-containing_protein_2-like_[Bombyx_mori]
FPKM:9.11 TPM:4.74
3522 A_BomoMSG_c13831_g1_i1
253bp
FPKM:8.08 TPM:4.20
3523 A_BomoMSG_c13832_g1_i1
433bp
FPKM:32.19 TPM:16.74
3524 A_BomoMSG_c13833_g1_i1
241bp
 sedoheptulokinase_[Bombyx_mori]
FPKM:0.00 TPM:0.00
3525 A_BomoMSG_c13833_g1_i2
311bp
 sedoheptulokinase_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005975 P carbohydrate metabolic process
GO:0009052 P pentose-phosphate shunt, non-oxidative branch
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0016773 F phosphotransferase activity, alcohol group as acceptor
GO:0035963 P cellular response to interleukin-13
GO:0043030 P regulation of macrophage activation
GO:0050277 F sedoheptulokinase activity
GO:0050727 P regulation of inflammatory response
GO:0071222 P cellular response to lipopolysaccharide
GO:0071353 P cellular response to interleukin-4
FPKM:0.42 TPM:0.22
3526 A_BomoMSG_c13833_g1_i3
577bp
 sedoheptulokinase_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005975 P carbohydrate metabolic process
GO:0009052 P pentose-phosphate shunt, non-oxidative branch
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0016773 F phosphotransferase activity, alcohol group as acceptor
GO:0035963 P cellular response to interleukin-13
GO:0043030 P regulation of macrophage activation
GO:0050277 F sedoheptulokinase activity
GO:0050727 P regulation of inflammatory response
GO:0071222 P cellular response to lipopolysaccharide
GO:0071353 P cellular response to interleukin-4
FPKM:3.07 TPM:1.60
3527 A_BomoMSG_c13834_g1_i1
355bp
FPKM:3.22 TPM:1.67
3528 A_BomoMSG_c13835_g1_i1
505bp
FPKM:2.36 TPM:1.23
3529 A_BomoMSG_c13836_g1_i1
377bp
 ubiquitin_carboxyl-terminal_hydrolase_34_[Bombyx_mori]
GO:0000124 C SAGA complex
GO:0004197 F cysteine-type endopeptidase activity
GO:0004843 F thiol-dependent deubiquitinase
GO:0005515 F protein binding
GO:0005829 C cytosol
GO:0006355 P regulation of transcription, DNA-templated
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0016055 P Wnt signaling pathway
GO:0016578 P histone deubiquitination
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0036459 F thiol-dependent deubiquitinase
GO:0071108 P protein K48-linked deubiquitination
GO:0090263 P positive regulation of canonical Wnt signaling pathway
FPKM:2.38 TPM:1.24
3530 A_BomoMSG_c13837_g1_i1
503bp
FPKM:2.55 TPM:1.32
3531 A_BomoMSG_c13838_g1_i1
238bp
FPKM:2.68 TPM:1.40
3532 A_BomoMSG_c13839_g1_i1
1156bp
 LOW_QUALITY_PROTEIN:_regulator_of_nonsense_transcripts_2_[Bombyx_mori]
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0001889 P liver development
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006406 P mRNA export from nucleus
GO:0031100 P animal organ regeneration
GO:0035145 C exon-exon junction complex
GO:0042162 F telomeric DNA binding
GO:0048471 C perinuclear region of cytoplasm
FPKM:17.35 TPM:9.03
3533 A_BomoMSG_c1383_g1_i1
231bp
 PREDICTED:_UPF0183_protein_CG7083_[Papilio_polytes]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
FPKM:2.90 TPM:1.51
3534 A_BomoMSG_c13842_g1_i1
251bp
FPKM:1.76 TPM:0.92
3535 A_BomoMSG_c13843_g1_i1
258bp
FPKM:4.96 TPM:2.58
3536 A_BomoMSG_c13844_g1_i1
389bp
 PREDICTED:_tyrosine-protein_phosphatase_Lar-like_[Amyelois_transitella]
GO:0001700 P embryonic development via the syncytial blastoderm
GO:0004721 F phosphoprotein phosphatase activity
GO:0004725 F protein tyrosine phosphatase activity
GO:0005001 F transmembrane receptor protein tyrosine phosphatase activity
GO:0005515 F protein binding
GO:0005875 C microtubule associated complex
GO:0005886 C plasma membrane
GO:0005925 C focal adhesion
GO:0006470 P protein dephosphorylation
GO:0007155 P cell adhesion
GO:0007283 P spermatogenesis
GO:0007399 P nervous system development
GO:0007411 P axon guidance
GO:0007412 P axon target recognition
GO:0008045 P motor neuron axon guidance
GO:0008201 F heparin binding
GO:0008360 P regulation of cell shape
GO:0008594 P photoreceptor cell morphogenesis
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0016791 F phosphatase activity
GO:0030424 C axon
GO:0031290 P retinal ganglion cell axon guidance
GO:0032093 F SAM domain binding
GO:0035335 P peptidyl-tyrosine dephosphorylation
GO:0045467 P R7 cell development
GO:0048477 P oogenesis
GO:0048675 P axon extension
GO:0048841 P regulation of axon extension involved in axon guidance
GO:0051124 P synaptic assembly at neuromuscular junction
GO:1903386 P negative regulation of homophilic cell adhesion
FPKM:1.25 TPM:0.65
3537 A_BomoMSG_c13845_g1_i1
317bp
FPKM:3.23 TPM:1.68
3538 A_BomoMSG_c13846_g1_i1
1117bp
 uncharacterized_protein_LOC101741178_isoform_X3_[Bombyx_mori]
FPKM:93.00 TPM:48.38
3539 A_BomoMSG_c13846_g1_i2
1222bp
 uncharacterized_protein_LOC101741178_isoform_X1_[Bombyx_mori]
FPKM:20.74 TPM:10.79
3540 A_BomoMSG_c13847_g1_i1
215bp
 THO_complex_subunit_5_homolog_[Bombyx_mori]
FPKM:4.42 TPM:2.30
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