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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
3481 A_BomoMSG_c13793_g1_i1
416bp
FPKM:4.06 TPM:2.11
3482 A_BomoMSG_c13795_g1_i1
1253bp
 isovaleryl_coenzyme_A_dehydrogenase_[Bombyx_mori]
GO:0000062 F fatty-acyl-CoA binding
GO:0003995 F acyl-CoA dehydrogenase activity
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0006551 P leucine metabolic process
GO:0006552 P leucine catabolic process
GO:0008152 P metabolic process
GO:0008470 F isovaleryl-CoA dehydrogenase activity
GO:0009055 F electron transfer activity
GO:0016491 F oxidoreductase activity
GO:0016627 F oxidoreductase activity, acting on the CH-CH group of donors
GO:0031966 C mitochondrial membrane
GO:0033539 P fatty acid beta-oxidation using acyl-CoA dehydrogenase
GO:0050660 F flavin adenine dinucleotide binding
GO:0051260 P protein homooligomerization
GO:0052890 F oxidoreductase activity, acting on the CH-CH group of donors, with a flavin as acceptor
GO:0055088 P lipid homeostasis
GO:0055114 P obsolete oxidation-reduction process
FPKM:19.81 TPM:10.31
3483 A_BomoMSG_c13797_g1_i1
452bp
 helicase_POLQ-like_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000724 P double-strand break repair via homologous recombination
GO:0003676 F nucleic acid binding
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0016787 F hydrolase activity
FPKM:2.38 TPM:1.24
3484 A_BomoMSG_c13798_g1_i1
755bp
 glutamate_receptor_1_[Bombyx_mori]
GO:0001966 P thigmotaxis
GO:0004872 F signaling receptor activity
GO:0004970 F ionotropic glutamate receptor activity
GO:0004971 F AMPA glutamate receptor activity
GO:0005216 F ion channel activity
GO:0005234 F extracellularly glutamate-gated ion channel activity
GO:0005515 F protein binding
GO:0005768 C endosome
GO:0005783 C endoplasmic reticulum
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006972 P hyperosmotic response
GO:0007614 P short-term memory
GO:0007631 P feeding behavior
GO:0008306 P associative learning
GO:0008328 C ionotropic glutamate receptor complex
GO:0008344 P adult locomotory behavior
GO:0009612 P response to mechanical stimulus
GO:0009986 C cell surface
GO:0014069 C postsynaptic density
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0019899 F enzyme binding
GO:0030054 C cell junction
GO:0030425 C dendrite
GO:0032589 C neuron projection membrane
GO:0034220 P ion transmembrane transport
GO:0035235 P ionotropic glutamate receptor signaling pathway
GO:0035249 P synaptic transmission, glutamatergic
GO:0043005 C neuron projection
GO:0043025 C neuronal cell body
GO:0043056 P forward locomotion
GO:0043058 P regulation of backward locomotion
GO:0045202 C synapse
GO:0045211 C postsynaptic membrane
GO:0046959 P habituation
GO:0050913 P sensory perception of bitter taste
GO:0055037 C recycling endosome
GO:0097038 C perinuclear endoplasmic reticulum
FPKM:1.98 TPM:1.03
3485 A_BomoMSG_c13799_g1_i1
226bp
FPKM:9.99 TPM:5.20
3486 A_BomoMSG_c1379_g1_i1
352bp
 transformation/transcription_domain-associated_protein_[Bombyx_mori]
GO:0000125 C SAGA complex
GO:0000812 C Swr1 complex
GO:0003712 F transcription coregulator activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005794 C Golgi apparatus
GO:0006281 P DNA repair
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016568 P chromatin organization
GO:0016573 P histone acetylation
GO:0016578 P histone deubiquitination
GO:0016773 F phosphotransferase activity, alcohol group as acceptor
GO:0030914 C SAGA complex
GO:0033276 C transcription factor TFTC complex
GO:0035267 C NuA4 histone acetyltransferase complex
GO:0043967 P histone H4 acetylation
GO:0043968 P histone H2A acetylation
GO:1904837 P beta-catenin-TCF complex assembly
FPKM:1.78 TPM:0.93
3487 A_BomoMSG_c13800_g1_i1
334bp
FPKM:4.50 TPM:2.34
3488 A_BomoMSG_c13800_g1_i2
668bp
FPKM:2.45 TPM:1.27
3489 A_BomoMSG_c13801_g1_i1
387bp
FPKM:4.30 TPM:2.24
3490 A_BomoMSG_c13802_g1_i1
568bp
 kynurenine_3-monooxygenase_[Bombyx_mori]
GO:0004497 F monooxygenase activity
GO:0004502 F kynurenine 3-monooxygenase activity
GO:0005739 C mitochondrion
GO:0005741 C mitochondrial outer membrane
GO:0006569 P tryptophan catabolic process
GO:0009435 P NAD biosynthetic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016174 F NAD(P)H oxidase H2O2-forming activity
GO:0016491 F oxidoreductase activity
GO:0019363 P pyridine nucleotide biosynthetic process
GO:0019674 P NAD metabolic process
GO:0019805 P quinolinate biosynthetic process
GO:0031966 C mitochondrial membrane
GO:0034354 P 'de novo' NAD biosynthetic process from tryptophan
GO:0043420 P anthranilate metabolic process
GO:0044550 P secondary metabolite biosynthetic process
GO:0050660 F flavin adenine dinucleotide binding
GO:0055114 P obsolete oxidation-reduction process
GO:0070189 P kynurenine metabolic process
GO:0071949 F FAD binding
FPKM:2.58 TPM:1.34
3491 A_BomoMSG_c13803_g1_i1
306bp
FPKM:3.46 TPM:1.80
3492 A_BomoMSG_c13804_g1_i1
418bp
 uncharacterized_protein_LOC105842814,_partial_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0004518 F nuclease activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0008150 P biological_process
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:4.25 TPM:2.21
3493 A_BomoMSG_c13805_g1_i1
2056bp
 AN1-type_zinc_finger_protein_6_isoform_X2_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0008270 F zinc ion binding
GO:0046872 F metal ion binding
FPKM:28.56 TPM:14.86
3494 A_BomoMSG_c13805_g1_i2
2144bp
 AN1-type_zinc_finger_protein_6_isoform_X2_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0008270 F zinc ion binding
GO:0046872 F metal ion binding
FPKM:5.54 TPM:2.88
3495 A_BomoMSG_c13806_g1_i1
840bp
 coronin-6_isoform_X3_[Bombyx_mori]
FPKM:3.12 TPM:1.63
3496 A_BomoMSG_c13807_g1_i1
388bp
FPKM:1.01 TPM:0.52
3497 A_BomoMSG_c13808_g1_i1
363bp
FPKM:7.04 TPM:3.66
3498 A_BomoMSG_c13809_g1_i1
591bp
FPKM:7.20 TPM:3.75
3499 A_BomoMSG_c1380_g1_i1
226bp
 PREDICTED:_40S_ribosomal_protein_S24_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0003735 F structural constituent of ribosome
GO:0005622 C intracellular anatomical structure
GO:0005840 C ribosome
GO:0006412 P translation
GO:0030529 C ribonucleoprotein complex
FPKM:4.61 TPM:2.40
3500 A_BomoMSG_c13811_g1_i1
331bp
 PREDICTED:_neurobeachin_isoform_X5_[Papilio_polytes]
GO:0005737 C cytoplasm
GO:0007528 P neuromuscular junction development
GO:0007614 P short-term memory
GO:0008104 P protein localization
GO:0008355 P olfactory learning
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016319 P mushroom body development
GO:0042462 P eye photoreceptor cell development
GO:0042675 P compound eye cone cell differentiation
GO:0043025 C neuronal cell body
GO:0043204 C perikaryon
GO:0051018 F protein kinase A binding
FPKM:7.62 TPM:3.96
3501 A_BomoMSG_c13812_g1_i1
513bp
 zinc_finger_protein_436_[Bombyx_mori]
FPKM:3.63 TPM:1.89
3502 A_BomoMSG_c13813_g1_i1
557bp
 gastrula_zinc_finger_protein_XlCGF46.1-like_[Bombyx_mori]
GO:0000118 C histone deacetylase complex
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006915 P apoptotic process
GO:0007275 P multicellular organism development
GO:0016235 C aggresome
GO:0016607 C nuclear speck
GO:0018024 F histone-lysine N-methyltransferase activity
GO:0030154 P cell differentiation
GO:0030512 P negative regulation of transforming growth factor beta receptor signaling pathway
GO:0034968 P histone lysine methylation
GO:0042803 F protein homodimerization activity
GO:0043069 P negative regulation of programmed cell death
GO:0043231 C intracellular membrane-bounded organelle
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046329 P negative regulation of JNK cascade
GO:0046872 F metal ion binding
GO:0051726 P regulation of cell cycle
GO:0071425 P hematopoietic stem cell proliferation
FPKM:0.00 TPM:0.00
3503 A_BomoMSG_c13813_g1_i2
830bp
 gastrula_zinc_finger_protein_XlCGF46.1-like_[Bombyx_mori]
GO:0000118 C histone deacetylase complex
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006915 P apoptotic process
GO:0007275 P multicellular organism development
GO:0016235 C aggresome
GO:0016607 C nuclear speck
GO:0018024 F histone-lysine N-methyltransferase activity
GO:0030154 P cell differentiation
GO:0030512 P negative regulation of transforming growth factor beta receptor signaling pathway
GO:0034968 P histone lysine methylation
GO:0042803 F protein homodimerization activity
GO:0043069 P negative regulation of programmed cell death
GO:0043231 C intracellular membrane-bounded organelle
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046329 P negative regulation of JNK cascade
GO:0046872 F metal ion binding
GO:0051726 P regulation of cell cycle
GO:0071425 P hematopoietic stem cell proliferation
FPKM:3.26 TPM:1.70
3504 A_BomoMSG_c13814_g1_i1
684bp
FPKM:5.64 TPM:2.93
3505 A_BomoMSG_c13816_g1_i1
562bp
FPKM:2.18 TPM:1.13
3506 A_BomoMSG_c13817_g1_i1
337bp
FPKM:2.01 TPM:1.04
3507 A_BomoMSG_c13817_g1_i2
731bp
FPKM:2.65 TPM:1.38
3508 A_BomoMSG_c13818_g1_i1
820bp
 small_nuclear_ribonucleoprotein_Sm_D1_[Bombyx_mori]
GO:0000243 C commitment complex
GO:0000245 P spliceosomal complex assembly
GO:0000387 P spliceosomal snRNP assembly
GO:0002230 P positive regulation of defense response to virus by host
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0005682 C U5 snRNP
GO:0005685 C U1 snRNP
GO:0005686 C U2 snRNP
GO:0005687 C U4 snRNP
GO:0005689 C U12-type spliceosomal complex
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0030529 C ribonucleoprotein complex
GO:0034709 C methylosome
GO:0034715 C pICln-Sm protein complex
GO:0034719 C SMN-Sm protein complex
GO:0044822 F RNA binding
GO:0071010 C prespliceosome
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
GO:0097526 C spliceosomal tri-snRNP complex
GO:0098779 P positive regulation of mitophagy in response to mitochondrial depolarization
GO:0098792 P xenophagy
FPKM:61.68 TPM:32.09
3509 A_BomoMSG_c13820_g1_i1
547bp
 LOW_QUALITY_PROTEIN:_peroxisome_assembly_factor_2_[Bombyx_mori]
FPKM:3.62 TPM:1.88
3510 A_BomoMSG_c13821_g1_i1
521bp
 hypothetical_protein_2_-_silkworm_transposon_mag
FPKM:1.78 TPM:0.92
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