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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
3271 A_BomoMSG_c13587_g1_i1
205bp
FPKM:17.37 TPM:9.04
3272 A_BomoMSG_c13588_g1_i1
645bp
 HIG1_domain_family_member_2A,_mitochondrial_[Bombyx_mori]
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0031966 C mitochondrial membrane
GO:0043066 P negative regulation of apoptotic process
GO:0055114 P obsolete oxidation-reduction process
GO:0070469 C respirasome
FPKM:41.75 TPM:21.72
3273 A_BomoMSG_c13589_g1_i1
1263bp
 proteasome_zeta_subunit_[Bombyx_mori]
GO:0000502 C proteasome complex
GO:0002479 P antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent
GO:0004175 F endopeptidase activity
GO:0004298 F threonine-type endopeptidase activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005839 C proteasome core complex
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0008233 F peptidase activity
GO:0016787 F hydrolase activity
GO:0019773 C proteasome core complex, alpha-subunit complex
GO:0051603 P proteolysis involved in cellular protein catabolic process
GO:0070062 C extracellular exosome
FPKM:56.48 TPM:29.38
3274 A_BomoMSG_c13590_g1_i1
1197bp
 eukaryotic_translation_initiation_factor_3_subunit_A_[Bombyx_mori]
FPKM:82.79 TPM:43.07
3275 A_BomoMSG_c13591_g1_i1
521bp
 ethanolaminephosphotransferase_1_[Bombyx_mori]
GO:0004307 F ethanolaminephosphotransferase activity
GO:0005575 C cellular_component
GO:0006629 P lipid metabolic process
GO:0006646 P phosphatidylethanolamine biosynthetic process
GO:0008654 P phospholipid biosynthetic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0016780 F phosphotransferase activity, for other substituted phosphate groups
GO:0046872 F metal ion binding
GO:1903955 P positive regulation of protein targeting to mitochondrion
FPKM:4.52 TPM:2.35
3276 A_BomoMSG_c13591_g1_i2
243bp
 ethanolaminephosphotransferase_1_[Bombyx_mori]
GO:0004307 F ethanolaminephosphotransferase activity
GO:0005575 C cellular_component
GO:0006629 P lipid metabolic process
GO:0006646 P phosphatidylethanolamine biosynthetic process
GO:0008654 P phospholipid biosynthetic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0016780 F phosphotransferase activity, for other substituted phosphate groups
GO:0046872 F metal ion binding
GO:1903955 P positive regulation of protein targeting to mitochondrion
FPKM:0.00 TPM:0.00
3277 A_BomoMSG_c13592_g1_i1
739bp
FPKM:42.50 TPM:22.11
3278 A_BomoMSG_c13593_g1_i1
424bp
 multiple_epidermal_growth_factor-like_domains_protein_8_[Bombyx_mori]
GO:0003143 P embryonic heart tube morphogenesis
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0007368 P determination of left/right symmetry
GO:0010468 P regulation of gene expression
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030326 P embryonic limb morphogenesis
GO:0030509 P BMP signaling pathway
GO:0035108 P limb morphogenesis
GO:0042074 P cell migration involved in gastrulation
GO:0048704 P embryonic skeletal system morphogenesis
GO:0048842 P positive regulation of axon extension involved in axon guidance
GO:0055113 P epiboly involved in gastrulation with mouth forming second
GO:0060971 P embryonic heart tube left/right pattern formation
GO:0060972 P left/right pattern formation
GO:0060976 P coronary vasculature development
GO:0061371 P determination of heart left/right asymmetry
GO:0070062 C extracellular exosome
GO:0071907 P determination of digestive tract left/right asymmetry
GO:0097094 P craniofacial suture morphogenesis
GO:0097155 P fasciculation of sensory neuron axon
FPKM:0.00 TPM:0.00
3279 A_BomoMSG_c13593_g1_i2
940bp
 multiple_epidermal_growth_factor-like_domains_protein_8_[Bombyx_mori]
GO:0003143 P embryonic heart tube morphogenesis
GO:0005509 F calcium ion binding
GO:0005634 C nucleus
GO:0010468 P regulation of gene expression
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030326 P embryonic limb morphogenesis
GO:0030509 P BMP signaling pathway
GO:0048704 P embryonic skeletal system morphogenesis
GO:0048842 P positive regulation of axon extension involved in axon guidance
GO:0060971 P embryonic heart tube left/right pattern formation
GO:0060972 P left/right pattern formation
GO:0061371 P determination of heart left/right asymmetry
GO:0071907 P determination of digestive tract left/right asymmetry
GO:0097155 P fasciculation of sensory neuron axon
FPKM:3.03 TPM:1.58
3280 A_BomoMSG_c13594_g1_i1
1915bp
 vacuolar_ATPase_subunit_C_[Bombyx_mori]
GO:0006810 P transport
GO:0006811 P ion transport
GO:0015078 F proton transmembrane transporter activity
GO:0015991 P proton transmembrane transport
GO:0015992 P proton transmembrane transport
GO:0033180 C proton-transporting V-type ATPase, V1 domain
FPKM:29.47 TPM:15.33
3281 A_BomoMSG_c13596_g1_i1
229bp
FPKM:2.97 TPM:1.54
3282 A_BomoMSG_c13597_g1_i1
381bp
FPKM:0.88 TPM:0.46
3283 A_BomoMSG_c13597_g1_i2
357bp
FPKM:4.24 TPM:2.20
3284 A_BomoMSG_c13599_g1_i1
364bp
 SLIT_and_NTRK-like_protein_4_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005886 C plasma membrane
GO:0009986 C cell surface
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0051965 P positive regulation of synapse assembly
FPKM:1.68 TPM:0.87
3285 A_BomoMSG_c1359_g1_i1
503bp
 integrator_complex_subunit_5_[Bombyx_mori]
FPKM:3.56 TPM:1.85
3286 A_BomoMSG_c13600_g1_i1
1980bp
 DnaJ_(Hsp40)_homolog_2_[Bombyx_mori]
GO:0000151 C ubiquitin ligase complex
GO:0001664 F G protein-coupled receptor binding
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005783 C endoplasmic reticulum
GO:0005829 C cytosol
GO:0006457 P protein folding
GO:0006986 P response to unfolded protein
GO:0007283 P spermatogenesis
GO:0009408 P response to heat
GO:0016020 C membrane
GO:0030317 P flagellated sperm motility
GO:0030521 P androgen receptor signaling pathway
GO:0030544 F Hsp70 protein binding
GO:0031072 F heat shock protein binding
GO:0031397 P negative regulation of protein ubiquitination
GO:0031625 F ubiquitin protein ligase binding
GO:0042769 P obsolete DNA damage response, detection of DNA damage
GO:0043065 P positive regulation of apoptotic process
GO:0043066 P negative regulation of apoptotic process
GO:0043231 C intracellular membrane-bounded organelle
GO:0043508 P negative regulation of JUN kinase activity
GO:0046872 F metal ion binding
GO:0048471 C perinuclear region of cytoplasm
GO:0050750 F low-density lipoprotein particle receptor binding
GO:0051082 F unfolded protein binding
GO:0051087 F chaperone binding
GO:0051223 P regulation of protein transport
GO:0055131 F C3HC4-type RING finger domain binding
GO:0070062 C extracellular exosome
GO:0070585 P protein localization to mitochondrion
GO:0098554 C cytoplasmic side of endoplasmic reticulum membrane
GO:1901998 P toxin transport
FPKM:64.84 TPM:33.73
3287 A_BomoMSG_c13601_g1_i1
752bp
 malignant_T-cell-amplified_sequence_1_homolog_[Bombyx_mori]
GO:0002188 P translation reinitiation
GO:0003723 F RNA binding
GO:0005737 C cytoplasm
GO:0006417 P regulation of translation
GO:0045948 P positive regulation of translational initiation
FPKM:57.50 TPM:29.91
3288 A_BomoMSG_c13602_g1_i1
212bp
 PREDICTED:_60S_ribosomal_protein_L10a_[Amyelois_transitella]
GO:0003723 F RNA binding
GO:0003735 F structural constituent of ribosome
GO:0005840 C ribosome
GO:0006412 P translation
GO:0015934 C large ribosomal subunit
GO:0030529 C ribonucleoprotein complex
FPKM:9.22 TPM:4.80
3289 A_BomoMSG_c13603_g1_i1
349bp
FPKM:4.22 TPM:2.19
3290 A_BomoMSG_c13604_g1_i1
699bp
 zinc_finger_protein_OZF_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
FPKM:3.18 TPM:1.65
3291 A_BomoMSG_c13604_g1_i2
290bp
 zinc_finger_protein_OZF_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0001078 F DNA-binding transcription repressor activity, RNA polymerase II-specific
GO:0001227 F DNA-binding transcription repressor activity, RNA polymerase II-specific
GO:0001649 P osteoblast differentiation
GO:0001707 P mesoderm formation
GO:0001837 P epithelial to mesenchymal transition
GO:0003198 P epithelial to mesenchymal transition involved in endocardial cushion formation
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007275 P multicellular organism development
GO:0007498 P mesoderm development
GO:0010718 P positive regulation of epithelial to mesenchymal transition
GO:0010957 P negative regulation of vitamin D biosynthetic process
GO:0016477 P cell migration
GO:0019900 F kinase binding
GO:0030335 P positive regulation of cell migration
GO:0031069 P hair follicle morphogenesis
GO:0043518 P negative regulation of DNA damage response, signal transduction by p53 class mediator
GO:0043565 F sequence-specific DNA binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0060021 P roof of mouth development
GO:0060536 P cartilage morphogenesis
GO:0060707 P trophoblast giant cell differentiation
GO:0060806 P negative regulation of cell differentiation involved in embryonic placenta development
GO:0060972 P left/right pattern formation
GO:0061314 P Notch signaling involved in heart development
GO:1902230 P negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage
GO:2000810 P regulation of bicellular tight junction assembly
FPKM:1.22 TPM:0.63
3292 A_BomoMSG_c13605_g1_i1
1149bp
 EF-hand_domain-containing_protein_D2_homolog_[Bombyx_mori]
GO:0005509 F calcium ion binding
GO:0005886 C plasma membrane
GO:0005927 C muscle tendon junction
GO:0007498 P mesoderm development
GO:0019233 P sensory perception of pain
GO:0046872 F metal ion binding
FPKM:33.28 TPM:17.31
3293 A_BomoMSG_c13606_g1_i1
219bp
FPKM:1.68 TPM:0.87
3294 A_BomoMSG_c13607_g1_i1
1537bp
 protein_FAM8A1_[Bombyx_mori]
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:25.77 TPM:13.41
3295 A_BomoMSG_c13608_g1_i1
493bp
 phosphorylase_b_kinase_gamma_catalytic_chain,_skeletal_muscle/heart_isoform_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004689 F phosphorylase kinase activity
GO:0005516 F calmodulin binding
GO:0005524 F ATP binding
GO:0005829 C cytosol
GO:0005964 C phosphorylase kinase complex
GO:0005975 P carbohydrate metabolic process
GO:0005977 P glycogen metabolic process
GO:0005978 P glycogen biosynthetic process
GO:0005980 P glycogen catabolic process
GO:0006468 P protein phosphorylation
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0019899 F enzyme binding
GO:0050321 F tau-protein kinase activity
FPKM:3.67 TPM:1.91
3296 A_BomoMSG_c13609_g1_i1
210bp
 protein_AF-10_isoform_X15_[Bombyx_mori]
FPKM:1.90 TPM:0.99
3297 A_BomoMSG_c13609_g1_i2
662bp
 protein_AF-10_isoform_X18_[Bombyx_mori]
FPKM:2.57 TPM:1.34
3298 A_BomoMSG_c13610_g1_i1
899bp
 PREDICTED:_uncharacterized_protein_LOC106720812_[Papilio_machaon]
FPKM:2.16 TPM:1.12
3299 A_BomoMSG_c13611_g1_i1
861bp
 peroxidasin_[Bombyx_mori]
GO:0004601 F peroxidase activity
GO:0005576 C extracellular region
GO:0006979 P response to oxidative stress
GO:0016491 F oxidoreductase activity
GO:0020037 F heme binding
GO:0042744 P hydrogen peroxide catabolic process
GO:0046872 F metal ion binding
GO:0055114 P obsolete oxidation-reduction process
GO:0098869 P cellular oxidant detoxification
FPKM:3.45 TPM:1.80
3300 A_BomoMSG_c13612_g1_i1
704bp
FPKM:4.54 TPM:2.36
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