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Search Assembled RNA-Seq

No.

Name
Length

Chromosome No./Scaffold Id
Scaffold Length

BLAST (vs nr)

Gene ontology

Transcript
Level

3241

A_BomoMSG_c13554_g1_i1

416bp

Bomo_Chr3

chromosome_transmission_fidelity_protein_18_homolog_[Bombyx_mori]

GO:0000166	F	nucleotide binding
GO:0003677	F	DNA binding
GO:0003689	F	DNA clamp loader activity
GO:0005524	F	ATP binding
GO:0005634	C	nucleus
GO:0005663	C	DNA replication factor C complex
GO:0006260	P	DNA replication
GO:0007049	P	cell cycle

FPKM:3.15 TPM:1.64

3242

A_BomoMSG_c13555_g1_i1

496bp

Bomo_Chr1

FPKM:5.89 TPM:3.06

3243

A_BomoMSG_c13556_g1_i1

290bp

Bomo_Chr27

FPKM:3.42 TPM:1.78

3244

A_BomoMSG_c13557_g1_i1

1085bp

Bomo_Chr23

protein_FRG1_homolog_[Bombyx_mori]

GO:0003674	F	molecular_function
GO:0005575	C	cellular_component
GO:0005634	C	nucleus
GO:0005730	C	nucleolus
GO:0005737	C	cytoplasm
GO:0006364	P	rRNA processing
GO:0007517	P	muscle organ development
GO:0015030	C	Cajal body
GO:0030018	C	Z disc
GO:0031936	P	obsolete negative regulation of chromatin silencing
GO:0042254	P	ribosome biogenesis
GO:0051015	F	actin filament binding
GO:0055120	C	striated muscle dense body
GO:0070511	P	negative regulation of histone H4-K20 methylation
GO:0071013	C	catalytic step 2 spliceosome

FPKM:35.48 TPM:18.45

3245

A_BomoMSG_c13558_g1_i1

271bp

Bomo_Chr6

FPKM:8.88 TPM:4.62

3246

A_BomoMSG_c13559_g1_i1

898bp

Bomo_Chr15

peptidyl-prolyl_cis-trans_isomerase_isoform_X1_[Bombyx_mori]

GO:0000413	P	protein peptidyl-prolyl isomerization
GO:0003677	F	DNA binding
GO:0003755	F	peptidyl-prolyl cis-trans isomerase activity
GO:0005634	C	nucleus
GO:0005730	C	nucleolus
GO:0005737	C	cytoplasm
GO:0005819	C	spindle
GO:0005856	C	cytoskeleton
GO:0008152	P	metabolic process
GO:0016853	F	isomerase activity

FPKM:27.94 TPM:14.53

3247

A_BomoMSG_c1355_g1_i1

209bp

Bomo_Chr10

FPKM:3.85 TPM:2.00

3248

A_BomoMSG_c13560_g1_i1

393bp

Bomo_Chr4

FPKM:3.70 TPM:1.92

3249

A_BomoMSG_c13561_g1_i1

348bp

Bomo_Chr4

enhancer_of_mRNA-decapping_protein_4-like_[Bombyx_mori]

GO:0000932	C	P-body
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm

FPKM:33.91 TPM:17.64

3250

A_BomoMSG_c13562_g1_i1

557bp

Bomo_Chr1

FPKM:2.50 TPM:1.30

3251

A_BomoMSG_c13562_g2_i1

239bp

Bomo_Chr1

FPKM:1.33 TPM:0.69

3252

A_BomoMSG_c13563_g1_i1

1460bp

Bomo_Chr2

nascent_polypeptide_associated_complex_protein_alpha_subunit_[Bombyx_mori]

GO:0005515	F	protein binding
GO:0005854	C	nascent polypeptide-associated complex
GO:0006810	P	transport
GO:0007275	P	multicellular organism development
GO:0015031	P	protein transport
GO:0022008	P	neurogenesis
GO:0048477	P	oogenesis

FPKM:170.97 TPM:88.94

3253

A_BomoMSG_c13563_g1_i2

1457bp

Bomo_Chr2

nascent_polypeptide_associated_complex_protein_alpha_subunit_[Bombyx_mori]

GO:0005515	F	protein binding
GO:0005854	C	nascent polypeptide-associated complex
GO:0006810	P	transport
GO:0007275	P	multicellular organism development
GO:0015031	P	protein transport
GO:0022008	P	neurogenesis
GO:0048477	P	oogenesis

FPKM:41.71 TPM:21.70

3254

A_BomoMSG_c13564_g1_i1

451bp

Bomo_Chr14

LOW_QUALITY_PROTEIN:_N-alpha-acetyltransferase_15,_NatA_auxiliary_subunit_[Bombyx_mori]

GO:0001525	P	angiogenesis
GO:0004596	F	peptide alpha-N-acetyltransferase activity
GO:0005515	F	protein binding
GO:0005634	C	nucleus
GO:0005667	C	transcription regulator complex
GO:0005737	C	cytoplasm
GO:0006351	P	transcription, DNA-templated
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006474	P	N-terminal protein amino acid acetylation
GO:0007275	P	multicellular organism development
GO:0008080	F	N-acetyltransferase activity
GO:0016020	C	membrane
GO:0016407	F	acetyltransferase activity
GO:0017196	P	N-terminal peptidyl-methionine acetylation
GO:0030154	P	cell differentiation
GO:0031415	C	NatA complex
GO:0043022	F	ribosome binding
GO:0043066	P	negative regulation of apoptotic process
GO:0044822	F	RNA binding
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0048471	C	perinuclear region of cytoplasm
GO:0050821	P	protein stabilization

FPKM:3.78 TPM:1.97

3255

A_BomoMSG_c13567_g1_i1

304bp

Bomo_Chr16

FPKM:5.45 TPM:2.83

3256

A_BomoMSG_c13568_g1_i1

351bp

Bomo_Chr15

ras_GTPase-activating_protein_nGAP_[Bombyx_mori]

FPKM:3.88 TPM:2.02

3257

A_BomoMSG_c13569_g1_i1

350bp

Bomo_Chr1

LOW_QUALITY_PROTEIN:_mediator_of_RNA_polymerase_II_transcription_subunit_23_[Bombyx_mori]

GO:0005634	C	nucleus
GO:0006351	P	transcription, DNA-templated
GO:0006355	P	regulation of transcription, DNA-templated

FPKM:4.20 TPM:2.18

3258

A_BomoMSG_c1356_g1_i1

206bp

Bomo_Chr1

FPKM:20.13 TPM:10.47

3259

A_BomoMSG_c13570_g1_i1

313bp

Bomo_Chr15

FPKM:5.15 TPM:2.68

3260

A_BomoMSG_c13571_g1_i1

230bp

Bomo_Chr22

interferon-related_developmental_regulator_2_[Bombyx_mori]

GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0007275	P	multicellular organism development
GO:0014706	P	striated muscle tissue development
GO:0030154	P	cell differentiation
GO:0030517	P	negative regulation of axon extension
GO:0042692	P	muscle cell differentiation
GO:0043403	P	skeletal muscle tissue regeneration
GO:0048671	P	negative regulation of collateral sprouting

FPKM:8.80 TPM:4.58

3261

A_BomoMSG_c13573_g1_i1

868bp

Bomo_Chr17

intraflagellar_transport_protein_140_homolog_[Bombyx_mori]

GO:0001750	C	photoreceptor outer segment
GO:0003674	F	molecular_function
GO:0005737	C	cytoplasm
GO:0005813	C	centrosome
GO:0005815	C	microtubule organizing center
GO:0005856	C	cytoskeleton
GO:0005929	C	cilium
GO:0005930	C	axoneme
GO:0007368	P	determination of left/right symmetry
GO:0007507	P	heart development
GO:0008589	P	regulation of smoothened signaling pathway
GO:0021532	P	neural tube patterning
GO:0030030	P	cell projection organization
GO:0030991	C	intraciliary transport particle A
GO:0031513	C	non-motile cilium
GO:0032391	C	photoreceptor connecting cilium
GO:0035108	P	limb morphogenesis
GO:0035721	P	intraciliary retrograde transport
GO:0035845	P	photoreceptor cell outer segment organization
GO:0036064	C	ciliary basal body
GO:0042073	P	intraciliary transport
GO:0042384	P	cilium assembly
GO:0042995	C	cell projection
GO:0048705	P	skeletal system morphogenesis
GO:0060041	P	retina development in camera-type eye
GO:0060271	P	cilium assembly
GO:0061512	P	protein localization to cilium
GO:0072001	P	renal system development
GO:0072372	C	cilium
GO:0097542	C	ciliary tip
GO:1902017	P	regulation of cilium assembly

FPKM:3.59 TPM:1.87

3262

A_BomoMSG_c13574_g1_i1

328bp

Bomo_Chr15

FPKM:2.02 TPM:1.05

3263

A_BomoMSG_c13575_g1_i1

521bp

Bomo_Chr11

FPKM:3.71 TPM:1.93

3264

A_BomoMSG_c13576_g1_i1

1482bp

Bomo_Chr23

PREDICTED:_serum_response_factor_homolog_isoform_X2_[Amyelois_transitella]

GO:0001077	F	DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0002168	P	instar larval development
GO:0003677	F	DNA binding
GO:0005634	C	nucleus
GO:0006351	P	transcription, DNA-templated
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006366	P	transcription by RNA polymerase II
GO:0007275	P	multicellular organism development
GO:0007424	P	open tracheal system development
GO:0007430	P	terminal branching, open tracheal system
GO:0007475	P	apposition of dorsal and ventral imaginal disc-derived wing surfaces
GO:0007476	P	imaginal disc-derived wing morphogenesis
GO:0007614	P	short-term memory
GO:0008586	P	imaginal disc-derived wing vein morphogenesis
GO:0030154	P	cell differentiation
GO:0030431	P	sleep
GO:0033613	F	DNA-binding transcription factor binding
GO:0035154	P	terminal cell fate specification, open tracheal system
GO:0035209	P	pupal development
GO:0035220	P	wing disc development
GO:0045165	P	cell fate commitment
GO:0045944	P	positive regulation of transcription by RNA polymerase II
GO:0046983	F	protein dimerization activity

FPKM:16.36 TPM:8.51

3265

A_BomoMSG_c13577_g1_i1

437bp

Bomo_Chr8

FPKM:2.09 TPM:1.09

3266

A_BomoMSG_c13579_g1_i1

298bp

Bomo_Chr4

calcium_and_integrin_binding_protein_CIB_[Bombyx_mori]

GO:0001525	P	angiogenesis
GO:0005509	F	calcium ion binding
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0005815	C	microtubule organizing center
GO:0005856	C	cytoskeleton
GO:0005886	C	plasma membrane
GO:0006915	P	apoptotic process
GO:0007049	P	cell cycle
GO:0007155	P	cell adhesion
GO:0007229	P	integrin-mediated signaling pathway
GO:0007283	P	spermatogenesis
GO:0016020	C	membrane
GO:0016324	C	apical plasma membrane
GO:0030027	C	lamellipodium
GO:0030154	P	cell differentiation
GO:0030426	C	growth cone
GO:0032433	C	filopodium tip
GO:0032587	C	ruffle membrane
GO:0042383	C	sarcolemma
GO:0042995	C	cell projection
GO:0048471	C	perinuclear region of cytoplasm
GO:0051301	P	cell division

FPKM:5.26 TPM:2.74

3267

A_BomoMSG_c1357_g1_i1

248bp

Bomo_Chr11

fatty_acid_synthase_[Bombyx_mori]

GO:0001649	P	osteoblast differentiation
GO:0003824	F	catalytic activity
GO:0004312	F	fatty acid synthase activity
GO:0004313	F	[acyl-carrier-protein] S-acetyltransferase activity
GO:0004314	F	[acyl-carrier-protein] S-malonyltransferase activity
GO:0004315	F	3-oxoacyl-[acyl-carrier-protein] synthase activity
GO:0004316	F	3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity
GO:0004317	F	3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase activity
GO:0004319	F	enoyl-[acyl-carrier-protein] reductase (NADPH, B-specific) activity
GO:0004320	F	oleoyl-[acyl-carrier-protein] hydrolase activity
GO:0005515	F	protein binding
GO:0005737	C	cytoplasm
GO:0005739	C	mitochondrion
GO:0005794	C	Golgi apparatus
GO:0005829	C	cytosol
GO:0005886	C	plasma membrane
GO:0006084	P	acetyl-CoA metabolic process
GO:0006629	P	lipid metabolic process
GO:0006631	P	fatty acid metabolic process
GO:0006633	P	fatty acid biosynthetic process
GO:0008144	F	obsolete drug binding
GO:0008152	P	metabolic process
GO:0009058	P	biosynthetic process
GO:0015939	P	pantothenate metabolic process
GO:0016020	C	membrane
GO:0016295	F	myristoyl-[acyl-carrier-protein] hydrolase activity
GO:0016296	F	palmitoyl-[acyl-carrier-protein] hydrolase activity
GO:0016297	F	acyl-[acyl-carrier-protein] hydrolase activity
GO:0016491	F	oxidoreductase activity
GO:0016740	F	transferase activity
GO:0016787	F	hydrolase activity
GO:0016788	F	hydrolase activity, acting on ester bonds
GO:0016829	F	lyase activity
GO:0019171	F	3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity
GO:0030879	P	mammary gland development
GO:0031177	F	phosphopantetheine binding
GO:0031325	P	positive regulation of cellular metabolic process
GO:0035338	P	long-chain fatty-acyl-CoA biosynthetic process
GO:0042470	C	melanosome
GO:0042587	C	glycogen granule
GO:0042802	F	identical protein binding
GO:0042803	F	protein homodimerization activity
GO:0044822	F	RNA binding
GO:0047117	F	enoyl-[acyl-carrier-protein] reductase (NADPH, A-specific) activity
GO:0047451	F	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
GO:0055114	P	obsolete oxidation-reduction process
GO:0070062	C	extracellular exosome
GO:0070402	F	NADPH binding
GO:0071353	P	cellular response to interleukin-4