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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
2701 A_BomoMSG_c12980_g1_i1
309bp
FPKM:0.00 TPM:0.00
2702 A_BomoMSG_c12980_g1_i2
230bp
FPKM:0.00 TPM:0.00
2703 A_BomoMSG_c12980_g1_i3
336bp
FPKM:1.93 TPM:1.01
2704 A_BomoMSG_c12981_g1_i1
3316bp
 tudor_staphylococcus/micrococcal_nuclease_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0004518 F nuclease activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0016442 C RISC complex
GO:0031047 P gene silencing by RNA
GO:0042470 C melanosome
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:155.36 TPM:80.82
2705 A_BomoMSG_c12982_g1_i1
866bp
 uncharacterized_protein_LOC101744153_[Bombyx_mori]
FPKM:1.51 TPM:0.78
2706 A_BomoMSG_c12983_g1_i1
464bp
FPKM:8.40 TPM:4.37
2707 A_BomoMSG_c12984_g1_i1
310bp
 transmembrane_and_TPR_repeat-containing_protein_4_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0055074 P calcium ion homeostasis
FPKM:5.24 TPM:2.73
2708 A_BomoMSG_c12985_g1_i1
346bp
 uncharacterized_protein_LOC105842880_[Bombyx_mori]
FPKM:3.67 TPM:1.91
2709 A_BomoMSG_c12986_g1_i1
472bp
 uncharacterized_protein_LOC101738110_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005975 P carbohydrate metabolic process
GO:0006491 P N-glycan processing
GO:0006517 P protein deglycosylation
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0016798 F hydrolase activity, acting on glycosyl bonds
GO:0033925 F mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity
FPKM:1.86 TPM:0.97
2710 A_BomoMSG_c12988_g1_i1
293bp
FPKM:12.14 TPM:6.32
2711 A_BomoMSG_c12989_g1_i1
511bp
FPKM:3.98 TPM:2.07
2712 A_BomoMSG_c12992_g1_i1
369bp
 transcription_termination_factor_3,_mitochondrial_[Bombyx_mori]
FPKM:3.83 TPM:1.99
2713 A_BomoMSG_c12993_g1_i1
394bp
FPKM:5.16 TPM:2.68
2714 A_BomoMSG_c12994_g1_i1
443bp
 uncharacterized_protein_LOC101735330_[Bombyx_mori]
FPKM:2.25 TPM:1.17
2715 A_BomoMSG_c12995_g1_i1
234bp
FPKM:0.70 TPM:0.36
2716 A_BomoMSG_c12995_g2_i1
224bp
FPKM:3.15 TPM:1.64
2717 A_BomoMSG_c12996_g1_i1
278bp
FPKM:6.54 TPM:3.40
2718 A_BomoMSG_c12997_g1_i1
218bp
FPKM:4.25 TPM:2.21
2719 A_BomoMSG_c12997_g2_i1
225bp
FPKM:7.78 TPM:4.05
2720 A_BomoMSG_c12998_g1_i1
1888bp
 probable_ATP-dependent_RNA_helicase_pitchoune_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003724 F RNA helicase activity
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0008283 P cell population proliferation
GO:0010501 P RNA secondary structure unwinding
GO:0016049 P cell growth
GO:0016787 F hydrolase activity
GO:0019233 P sensory perception of pain
FPKM:46.53 TPM:24.21
2721 A_BomoMSG_c12999_g1_i1
743bp
 reverse_transcriptase,_partial_[Bombyx_mandarina]
FPKM:4.44 TPM:2.31
2722 A_BomoMSG_c12999_g1_i2
365bp
 reverse_transcriptase,_partial_[Bombyx_mandarina]
FPKM:0.00 TPM:0.00
2723 A_BomoMSG_c129_g1_i1
382bp
FPKM:2.58 TPM:1.34
2724 A_BomoMSG_c12_g1_i1
279bp
 LOW_QUALITY_PROTEIN:_histone-lysine_N-methyltransferase_SETMAR-like_[Pseudomyrmex_gracilis]
GO:0000014 F single-stranded DNA endodeoxyribonuclease activity
GO:0000729 P DNA double-strand break processing
GO:0000737 P DNA catabolic process, endonucleolytic
GO:0000793 C condensed chromosome
GO:0003677 F DNA binding
GO:0003690 F double-stranded DNA binding
GO:0003697 F single-stranded DNA binding
GO:0003824 F catalytic activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006281 P DNA repair
GO:0006303 P double-strand break repair via nonhomologous end joining
GO:0006974 P cellular response to DNA damage stimulus
GO:0008152 P metabolic process
GO:0008168 F methyltransferase activity
GO:0008270 F zinc ion binding
GO:0008283 P cell population proliferation
GO:0010452 P histone H3-K36 methylation
GO:0015074 P DNA integration
GO:0016568 P chromatin organization
GO:0016740 F transferase activity
GO:0016787 F hydrolase activity
GO:0018024 F histone-lysine N-methyltransferase activity
GO:0031297 P replication fork processing
GO:0032259 P methylation
GO:0034968 P histone lysine methylation
GO:0035861 C site of double-strand break
GO:0042800 F histone methyltransferase activity (H3-K4 specific)
GO:0042803 F protein homodimerization activity
GO:0043566 F DNA binding
GO:0044547 F DNA topoisomerase binding
GO:0044774 P mitotic DNA integrity checkpoint signaling
GO:0046872 F metal ion binding
GO:0046975 F histone methyltransferase activity (H3-K36 specific)
GO:0051568 P histone H3-K4 methylation
GO:0071157 P regulation of cell cycle
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0097676 P histone H3-K36 dimethylation
GO:2000373 P positive regulation of DNA topoisomerase (ATP-hydrolyzing) activity
GO:2001034 P positive regulation of double-strand break repair via nonhomologous end joining
GO:2001251 P negative regulation of chromosome organization
FPKM:2.32 TPM:1.21
2725 A_BomoMSG_c13003_g1_i1
367bp
FPKM:4.97 TPM:2.59
2726 A_BomoMSG_c13004_g1_i1
420bp
 integrin_alpha-PS1_isoform_X1_[Bombyx_mori]
FPKM:10.43 TPM:5.43
2727 A_BomoMSG_c13005_g1_i1
282bp
 serine/threonine-protein_kinase_SMG1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006281 P DNA repair
GO:0006950 P response to stress
GO:0007274 P neuromuscular synaptic transmission
GO:0016246 P RNA interference
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0016773 F phosphotransferase activity, alcohol group as acceptor
GO:0018105 P peptidyl-serine phosphorylation
GO:0035195 P gene silencing by miRNA
GO:0046777 P protein autophosphorylation
GO:0046872 F metal ion binding
GO:0048489 P synaptic vesicle transport
GO:0050808 P synapse organization
FPKM:0.00 TPM:0.00
2728 A_BomoMSG_c13005_g1_i2
304bp
 serine/threonine-protein_kinase_SMG1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006281 P DNA repair
GO:0006950 P response to stress
GO:0007274 P neuromuscular synaptic transmission
GO:0016246 P RNA interference
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0016773 F phosphotransferase activity, alcohol group as acceptor
GO:0018105 P peptidyl-serine phosphorylation
GO:0035195 P gene silencing by miRNA
GO:0046777 P protein autophosphorylation
GO:0046872 F metal ion binding
GO:0048489 P synaptic vesicle transport
GO:0050808 P synapse organization
FPKM:5.45 TPM:2.83
2729 A_BomoMSG_c13006_g1_i1
333bp
FPKM:4.59 TPM:2.39
2730 A_BomoMSG_c13009_g1_i1
424bp
 fasciclin-2_isoform_X4_[Bombyx_mori]
GO:0001746 P Bolwig's organ morphogenesis
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0007155 P cell adhesion
GO:0007156 P homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0007413 P axonal fasciculation
GO:0007528 P neuromuscular junction development
GO:0007611 P learning or memory
GO:0007612 P learning
GO:0007614 P short-term memory
GO:0008038 P neuron recognition
GO:0008045 P motor neuron axon guidance
GO:0008355 P olfactory learning
GO:0008360 P regulation of cell shape
GO:0008582 P regulation of synaptic assembly at neuromuscular junction
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016319 P mushroom body development
GO:0030154 P cell differentiation
GO:0030424 C axon
GO:0031225 C anchored component of membrane
GO:0031594 C neuromuscular junction
GO:0035152 P regulation of tube architecture, open tracheal system
GO:0035158 P regulation of tube diameter, open tracheal system
GO:0035159 P regulation of tube length, open tracheal system
GO:0036062 C presynaptic periactive zone
GO:0042059 P negative regulation of epidermal growth factor receptor signaling pathway
GO:0042734 C presynaptic membrane
GO:0042995 C cell projection
GO:0043005 C neuron projection
GO:0045211 C postsynaptic membrane
GO:0048149 P behavioral response to ethanol
GO:0048667 P cell morphogenesis involved in neuron differentiation
GO:0048786 C presynaptic active zone
GO:0048803 P imaginal disc-derived male genitalia morphogenesis
GO:0050803 P regulation of synapse structure or activity
GO:0050808 P synapse organization
GO:0061174 C type I terminal bouton
GO:0072499 P photoreceptor cell axon guidance
GO:0072553 P terminal button organization
GO:0097482 C muscle cell postsynaptic specialization
GO:1904800 P negative regulation of neuron remodeling
FPKM:2.84 TPM:1.48
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