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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
2731 A_BomoMSG_c1300_g1_i1
233bp
FPKM:0.71 TPM:0.37
2732 A_BomoMSG_c13010_g1_i1
423bp
FPKM:3.73 TPM:1.94
2733 A_BomoMSG_c13013_g1_i1
293bp
FPKM:38.52 TPM:20.04
2734 A_BomoMSG_c13015_g1_i1
290bp
FPKM:2.57 TPM:1.33
2735 A_BomoMSG_c13016_g1_i1
1976bp
 uncharacterized_protein_LOC101736392_[Bombyx_mori]
GO:0008802 F betaine-aldehyde dehydrogenase activity
GO:0008812 F choline dehydrogenase activity
GO:0016491 F oxidoreductase activity
GO:0016614 F oxidoreductase activity, acting on CH-OH group of donors
GO:0019285 P glycine betaine biosynthetic process from choline
GO:0050660 F flavin adenine dinucleotide binding
GO:0055114 P obsolete oxidation-reduction process
FPKM:60.60 TPM:31.52
2736 A_BomoMSG_c13016_g2_i1
914bp
FPKM:32.53 TPM:16.92
2737 A_BomoMSG_c13017_g1_i1
988bp
FPKM:1.36 TPM:0.71
2738 A_BomoMSG_c13018_g1_i1
492bp
FPKM:2.10 TPM:1.09
2739 A_BomoMSG_c13019_g1_i1
329bp
FPKM:2.01 TPM:1.05
2740 A_BomoMSG_c13020_g1_i1
264bp
 uncharacterized_protein_LOC101743721_isoform_X1_[Bombyx_mori]
FPKM:1.57 TPM:0.82
2741 A_BomoMSG_c13022_g1_i1
309bp
 frataxin_homolog,_mitochondrial_[Bombyx_mori]
GO:0004322 F ferroxidase activity
GO:0005739 C mitochondrion
GO:0006783 P heme biosynthetic process
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006879 P cellular iron ion homeostasis
GO:0008199 F ferric iron binding
GO:0010039 P response to iron ion
GO:0016226 P iron-sulfur cluster assembly
GO:0016491 F oxidoreductase activity
GO:0019896 P axonal transport of mitochondrion
GO:0034986 F iron chaperone activity
GO:0035073 P pupariation
GO:0042542 P response to hydrogen peroxide
GO:0045823 P positive regulation of heart contraction
GO:0045998 P positive regulation of ecdysteroid biosynthetic process
GO:0051881 P regulation of mitochondrial membrane potential
GO:0055072 P iron ion homeostasis
GO:0055114 P obsolete oxidation-reduction process
GO:1904115 C axon cytoplasm
FPKM:0.00 TPM:0.00
2742 A_BomoMSG_c13022_g1_i2
656bp
 frataxin_homolog,_mitochondrial_[Bombyx_mori]
GO:0004322 F ferroxidase activity
GO:0005739 C mitochondrion
GO:0006783 P heme biosynthetic process
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006879 P cellular iron ion homeostasis
GO:0008199 F ferric iron binding
GO:0010039 P response to iron ion
GO:0016226 P iron-sulfur cluster assembly
GO:0016491 F oxidoreductase activity
GO:0019896 P axonal transport of mitochondrion
GO:0034986 F iron chaperone activity
GO:0035073 P pupariation
GO:0042542 P response to hydrogen peroxide
GO:0045823 P positive regulation of heart contraction
GO:0045998 P positive regulation of ecdysteroid biosynthetic process
GO:0051881 P regulation of mitochondrial membrane potential
GO:0055072 P iron ion homeostasis
GO:0055114 P obsolete oxidation-reduction process
GO:1904115 C axon cytoplasm
FPKM:18.47 TPM:9.61
2743 A_BomoMSG_c13023_g1_i1
492bp
 zinc_finger_protein_343_isoform_X1_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
FPKM:2.80 TPM:1.46
2744 A_BomoMSG_c13025_g1_i1
2745bp
 RING_finger_protein_10_[Bombyx_mori]
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0008270 F zinc ion binding
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0051865 P protein autoubiquitination
FPKM:142.24 TPM:73.99
2745 A_BomoMSG_c13026_g1_i1
279bp
FPKM:6.03 TPM:3.13
2746 A_BomoMSG_c13028_g1_i1
319bp
 bladder_cancer-associated_protein_[Bombyx_mori]
FPKM:5.67 TPM:2.95
2747 A_BomoMSG_c13029_g1_i1
845bp
 uncharacterized_protein_LOC101739011_[Bombyx_mori]
FPKM:2.24 TPM:1.17
2748 A_BomoMSG_c13030_g1_i1
378bp
 hypothetical_protein_KGM_207299_[Danaus_plexippus_plexippus]
FPKM:4.47 TPM:2.33
2749 A_BomoMSG_c13031_g1_i1
225bp
FPKM:3.11 TPM:1.62
2750 A_BomoMSG_c13033_g1_i1
707bp
 ribonuclease_P_protein_subunit_p29_[Bombyx_mori]
GO:0000171 F ribonuclease MRP activity
GO:0000172 C ribonuclease MRP complex
GO:0003674 F molecular_function
GO:0003723 F RNA binding
GO:0004526 F ribonuclease P activity
GO:0004540 F ribonuclease activity
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0005655 C nucleolar ribonuclease P complex
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0006379 P mRNA cleavage
GO:0008033 P tRNA processing
GO:0008150 P biological_process
GO:0016787 F hydrolase activity
GO:0030677 C ribonuclease P complex
GO:0033204 F ribonuclease P RNA binding
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
FPKM:3.87 TPM:2.01
2751 A_BomoMSG_c13034_g1_i1
519bp
 synembryn_[Bombyx_mori]
GO:0001965 F G-protein alpha-subunit binding
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005096 F GTPase activator activity
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005938 C cell cortex
GO:0007163 P establishment or maintenance of cell polarity
GO:0007186 P G protein-coupled receptor signaling pathway
GO:0007275 P multicellular organism development
GO:0007369 P gastrulation
GO:0008105 P protein localization
GO:0008356 P asymmetric cell division
GO:0010004 P gastrulation involving germ band extension
GO:0040001 P establishment of mitotic spindle localization
GO:0043547 P positive regulation of GTPase activity
GO:0050821 P protein stabilization
GO:0055057 P neuroblast division
FPKM:3.73 TPM:1.94
2752 A_BomoMSG_c13035_g1_i1
678bp
FPKM:2.50 TPM:1.30
2753 A_BomoMSG_c13036_g1_i1
483bp
 biotin--protein_ligase_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000785 C chromatin
GO:0003824 F catalytic activity
GO:0004077 F biotin-[acetyl-CoA-carboxylase] ligase activity
GO:0004078 F biotin-[methylcrotonoyl-CoA-carboxylase] ligase activity
GO:0004079 F biotin-[methylmalonyl-CoA-carboxytransferase] ligase activity
GO:0004080 F biotin-[propionyl-CoA-carboxylase (ATP-hydrolyzing)] ligase activity
GO:0005524 F ATP binding
GO:0005652 C nuclear lamina
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005829 C cytosol
GO:0006464 P cellular protein modification process
GO:0008152 P metabolic process
GO:0008283 P cell population proliferation
GO:0009305 P protein biotinylation
GO:0009374 F biotin binding
GO:0016363 C nuclear matrix
GO:0016570 P histone modification
GO:0016874 F ligase activity
GO:0018271 F biotin-protein ligase activity
GO:0019899 F enzyme binding
GO:0042803 F protein homodimerization activity
GO:0070781 P response to biotin
GO:0071110 P histone biotinylation
FPKM:3.24 TPM:1.68
2754 A_BomoMSG_c13037_g1_i1
718bp
 E3_ubiquitin-protein_ligase_UBR4_[Bombyx_mori]
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005516 F calmodulin binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005856 C cytoskeleton
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016032 P viral process
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0046872 F metal ion binding
FPKM:4.22 TPM:2.19
2755 A_BomoMSG_c13038_g1_i1
459bp
 zinc_finger_protein_484_[Bombyx_mori]
FPKM:1.94 TPM:1.01
2756 A_BomoMSG_c13039_g1_i1
227bp
 HAUS_augmin-like_complex_subunit_3_[Bombyx_mori]
FPKM:0.76 TPM:0.40
2757 A_BomoMSG_c1303_g1_i1
357bp
FPKM:0.87 TPM:0.45
2758 A_BomoMSG_c13040_g1_i1
667bp
 E3_ubiquitin-protein_ligase_SMURF2_isoform_X2_[Bombyx_mori]
GO:0000151 C ubiquitin ligase complex
GO:0001700 P embryonic development via the syncytial blastoderm
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0007179 P transforming growth factor beta receptor signaling pathway
GO:0007275 P multicellular organism development
GO:0007293 P germarium-derived egg chamber formation
GO:0008101 P BMP signaling pathway
GO:0010629 P negative regulation of gene expression
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0030514 P negative regulation of BMP signaling pathway
GO:0040008 P regulation of growth
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0048619 P embryonic hindgut morphogenesis
FPKM:3.24 TPM:1.69
2759 A_BomoMSG_c13041_g1_i1
537bp
FPKM:2.32 TPM:1.21
2760 A_BomoMSG_c13042_g1_i1
817bp
 adenylate_cyclase_type_8_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004016 F adenylate cyclase activity
GO:0005515 F protein binding
GO:0005516 F calmodulin binding
GO:0005524 F ATP binding
GO:0005622 C intracellular anatomical structure
GO:0005886 C plasma membrane
GO:0006171 P cAMP biosynthetic process
GO:0007189 P adenylate cyclase-activating G protein-coupled receptor signaling pathway
GO:0007193 P adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway
GO:0008022 F protein C-terminus binding
GO:0008294 F calcium- and calmodulin-responsive adenylate cyclase activity
GO:0009190 P cyclic nucleotide biosynthetic process
GO:0014070 P response to organic cyclic compound
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016829 F lyase activity
GO:0016849 F phosphorus-oxygen lyase activity
GO:0019933 P cAMP-mediated signaling
GO:0035556 P intracellular signal transduction
GO:0046872 F metal ion binding
GO:0047485 F protein N-terminus binding
GO:0071277 P cellular response to calcium ion
FPKM:2.07 TPM:1.07
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