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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
2671 A_BomoMSG_c12946_g1_i1
263bp
FPKM:2.64 TPM:1.37
2672 A_BomoMSG_c12947_g1_i1
2694bp
 double-time_protein_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006468 P protein phosphorylation
GO:0006897 P endocytosis
GO:0007623 P circadian rhythm
GO:0008360 P regulation of cell shape
GO:0016055 P Wnt signaling pathway
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0018105 P peptidyl-serine phosphorylation
GO:0030177 P positive regulation of Wnt signaling pathway
GO:0030178 P negative regulation of Wnt signaling pathway
GO:0030529 C ribonucleoprotein complex
GO:0032091 P negative regulation of protein binding
GO:0032436 P positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0032922 P circadian regulation of gene expression
GO:0034613 P cellular protein localization
GO:0042752 P regulation of circadian rhythm
GO:0044822 F RNA binding
GO:0048511 P rhythmic process
GO:0090263 P positive regulation of canonical Wnt signaling pathway
GO:1903827 P regulation of protein localization
GO:2000052 P positive regulation of non-canonical Wnt signaling pathway
FPKM:23.72 TPM:12.34
2673 A_BomoMSG_c12948_g1_i1
240bp
FPKM:1.97 TPM:1.02
2674 A_BomoMSG_c12949_g1_i1
238bp
 reverse_transcriptase_[Bombyx_mori]
FPKM:5.36 TPM:2.79
2675 A_BomoMSG_c12950_g1_i1
719bp
 histone_H2A_deubiquitinase_MYSM1_isoform_X4_[Bombyx_mori]
FPKM:2.84 TPM:1.48
2676 A_BomoMSG_c12951_g1_i1
510bp
 suppressor_protein_SRP40-like_[Bombyx_mori]
FPKM:4.66 TPM:2.42
2677 A_BomoMSG_c12952_g1_i1
335bp
 high_affinity_copper_uptake_protein_1-like_[Helicoverpa_armigera]
GO:0005375 F copper ion transmembrane transporter activity
GO:0005737 C cytoplasm
GO:0005770 C late endosome
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006825 P copper ion transport
GO:0006855 P xenobiotic transmembrane transport
GO:0006878 P cellular copper ion homeostasis
GO:0015088 F copper ion transmembrane transporter activity
GO:0015677 P copper ion import
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0035434 P copper ion transmembrane transport
GO:0043025 C neuronal cell body
GO:0055037 C recycling endosome
GO:0072719 P cellular response to cisplatin
GO:1902861 P copper ion import across plasma membrane
FPKM:2.59 TPM:1.35
2678 A_BomoMSG_c12955_g1_i1
499bp
FPKM:10.30 TPM:5.36
2679 A_BomoMSG_c12956_g1_i1
209bp
FPKM:3.85 TPM:2.00
2680 A_BomoMSG_c12957_g1_i1
278bp
FPKM:3.27 TPM:1.70
2681 A_BomoMSG_c12958_g1_i1
444bp
FPKM:3.06 TPM:1.59
2682 A_BomoMSG_c12959_g1_i1
260bp
 eIF-2-alpha_kinase_GCN2_isoform_X2_[Bombyx_mori]
FPKM:5.42 TPM:2.82
2683 A_BomoMSG_c12960_g1_i1
540bp
FPKM:3.23 TPM:1.68
2684 A_BomoMSG_c12962_g1_i1
302bp
FPKM:4.73 TPM:2.46
2685 A_BomoMSG_c12963_g1_i1
344bp
FPKM:4.33 TPM:2.25
2686 A_BomoMSG_c12964_g1_i1
610bp
 UPF0587_protein_GA18326_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
FPKM:32.55 TPM:16.94
2687 A_BomoMSG_c12965_g1_i1
364bp
FPKM:0.56 TPM:0.29
2688 A_BomoMSG_c12966_g1_i1
310bp
 ATP-binding_cassette_sub-family_A_member_3_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005215 F transporter activity
GO:0005319 F lipid transporter activity
GO:0005524 F ATP binding
GO:0005615 C extracellular space
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006869 P lipid transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016887 F ATP hydrolysis activity
GO:0042493 P response to xenobiotic stimulus
GO:0042626 F ATPase-coupled transmembrane transporter activity
GO:0044267 P cellular protein metabolic process
GO:0051384 P response to glucocorticoid
GO:0055085 P transmembrane transport
GO:0097208 C alveolar lamellar body
GO:0097232 C lamellar body membrane
GO:0097233 C alveolar lamellar body membrane
FPKM:1.50 TPM:0.78
2689 A_BomoMSG_c12967_g1_i1
403bp
 uncharacterized_protein_LOC101746239_isoform_X1_[Bombyx_mori]
FPKM:5.92 TPM:3.08
2690 A_BomoMSG_c12968_g1_i1
697bp
 hypothetical_protein_ALC57_15605_[Trachymyrmex_cornetzi]
FPKM:1.59 TPM:0.83
2691 A_BomoMSG_c12968_g1_i2
439bp
 PREDICTED:_uncharacterized_protein_LOC108767572_[Trachymyrmex_cornetzi]
FPKM:0.31 TPM:0.16
2692 A_BomoMSG_c12968_g2_i1
694bp
 PREDICTED:_jerky_protein_homolog-like_[Bemisia_tabaci]
FPKM:2.75 TPM:1.43
2693 A_BomoMSG_c12971_g1_i1
212bp
 ubiquitin_carboxyl-terminal_hydrolase_34_[Bombyx_mori]
GO:0000124 C SAGA complex
GO:0004197 F cysteine-type endopeptidase activity
GO:0004843 F thiol-dependent deubiquitinase
GO:0005515 F protein binding
GO:0005829 C cytosol
GO:0006355 P regulation of transcription, DNA-templated
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0016055 P Wnt signaling pathway
GO:0016578 P histone deubiquitination
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0036459 F thiol-dependent deubiquitinase
GO:0071108 P protein K48-linked deubiquitination
GO:0090263 P positive regulation of canonical Wnt signaling pathway
FPKM:0.92 TPM:0.48
2694 A_BomoMSG_c12971_g2_i1
224bp
 ubiquitin_carboxyl-terminal_hydrolase_34_[Bombyx_mori]
GO:0000124 C SAGA complex
GO:0004197 F cysteine-type endopeptidase activity
GO:0004843 F thiol-dependent deubiquitinase
GO:0005515 F protein binding
GO:0005829 C cytosol
GO:0006355 P regulation of transcription, DNA-templated
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0016055 P Wnt signaling pathway
GO:0016578 P histone deubiquitination
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0036459 F thiol-dependent deubiquitinase
GO:0071108 P protein K48-linked deubiquitination
GO:0090263 P positive regulation of canonical Wnt signaling pathway
FPKM:0.79 TPM:0.41
2695 A_BomoMSG_c12972_g1_i1
262bp
FPKM:2.13 TPM:1.11
2696 A_BomoMSG_c12973_g1_i1
335bp
FPKM:7.13 TPM:3.71
2697 A_BomoMSG_c12974_g1_i1
512bp
FPKM:2.32 TPM:1.21
2698 A_BomoMSG_c12975_g1_i1
343bp
 dual_specificity_testis-specific_protein_kinase_2,_partial_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004712 F protein serine/threonine/tyrosine kinase activity
GO:0004713 F protein tyrosine kinase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006468 P protein phosphorylation
GO:0007283 P spermatogenesis
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0018108 P peptidyl-tyrosine phosphorylation
GO:0030036 P actin cytoskeleton organization
GO:0046872 F metal ion binding
GO:0048041 P focal adhesion assembly
FPKM:1.86 TPM:0.97
2699 A_BomoMSG_c12977_g1_i1
264bp
FPKM:2.09 TPM:1.09
2700 A_BomoMSG_c12978_g1_i1
504bp
 uncharacterized_LOC101745204_[Bombyx_mori]
FPKM:1.35 TPM:0.70
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