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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1741 A_BomoMSG_c11917_g1_i1
315bp
 Gag_protein_[Bombyx_mori]
FPKM:2.54 TPM:1.32
1742 A_BomoMSG_c11918_g1_i1
343bp
 exocyst_complex_component_1_[Bombyx_mori]
FPKM:6.83 TPM:3.55
1743 A_BomoMSG_c11919_g1_i1
269bp
FPKM:0.50 TPM:0.26
1744 A_BomoMSG_c11920_g1_i1
1096bp
 uncharacterized_protein_LOC101741307_[Bombyx_mori]
GO:0005215 F transporter activity
GO:0005622 C intracellular anatomical structure
GO:0005768 C endosome
GO:0005794 C Golgi apparatus
GO:0005802 C trans-Golgi network
GO:0006810 P transport
GO:0007040 P lysosome organization
GO:0008289 F lipid binding
GO:0016020 C membrane
GO:0030136 C clathrin-coated vesicle
GO:0031410 C cytoplasmic vesicle
GO:0031901 C early endosome membrane
GO:0080025 F phosphatidylinositol-3,5-bisphosphate binding
FPKM:2.41 TPM:1.25
1745 A_BomoMSG_c11921_g1_i1
216bp
 uncharacterized_protein_LOC101745326_[Bombyx_mori]
FPKM:0.00 TPM:0.00
1746 A_BomoMSG_c11921_g1_i2
324bp
 uncharacterized_protein_LOC101745326_[Bombyx_mori]
FPKM:2.07 TPM:1.08
1747 A_BomoMSG_c11922_g1_i1
245bp
FPKM:1.87 TPM:0.97
1748 A_BomoMSG_c11924_g1_i1
545bp
 probable_ATP-dependent_RNA_helicase_DDX43_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005622 C intracellular anatomical structure
GO:0010501 P RNA secondary structure unwinding
GO:0016787 F hydrolase activity
FPKM:3.64 TPM:1.89
1749 A_BomoMSG_c11925_g1_i1
211bp
 BTB/POZ_domain-containing_protein_2_[Bombyx_mori]
GO:0000932 C P-body
GO:0005515 F protein binding
GO:0005737 C cytoplasm
FPKM:1.87 TPM:0.97
1750 A_BomoMSG_c11925_g2_i1
342bp
 PREDICTED:_BTB/POZ_domain-containing_protein_2-like_[Amyelois_transitella]
GO:0000932 C P-body
GO:0003674 F molecular_function
GO:0005737 C cytoplasm
GO:0008150 P biological_process
GO:0016567 P protein ubiquitination
GO:0043234 C protein-containing complex
FPKM:3.43 TPM:1.79
1751 A_BomoMSG_c11926_g1_i1
474bp
FPKM:1.85 TPM:0.96
1752 A_BomoMSG_c11928_g1_i1
230bp
FPKM:2.93 TPM:1.53
1753 A_BomoMSG_c11928_g2_i1
425bp
FPKM:1.53 TPM:0.79
1754 A_BomoMSG_c11929_g1_i1
315bp
FPKM:3.27 TPM:1.70
1755 A_BomoMSG_c11930_g1_i1
592bp
 large_neutral_amino_acids_transporter_small_subunit_2_[Bombyx_mori]
GO:0003333 P amino acid transmembrane transport
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006865 P amino acid transport
GO:0015171 F amino acid transmembrane transporter activity
GO:0015179 F L-amino acid transmembrane transporter activity
GO:0015297 F antiporter activity
GO:0015807 P L-amino acid transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016323 C basolateral plasma membrane
GO:1902475 P L-alpha-amino acid transmembrane transport
FPKM:2.58 TPM:1.34
1756 A_BomoMSG_c11932_g1_i1
219bp
FPKM:0.00 TPM:0.00
1757 A_BomoMSG_c11932_g1_i2
219bp
FPKM:17.62 TPM:9.17
1758 A_BomoMSG_c11933_g1_i1
334bp
FPKM:2.80 TPM:1.46
1759 A_BomoMSG_c11934_g1_i1
230bp
 _laccase-like_multicopper_oxidase_2_isoform_B_[Bombyx_mori]
FPKM:3.67 TPM:1.91
1760 A_BomoMSG_c11935_g1_i1
223bp
FPKM:7.97 TPM:4.15
1761 A_BomoMSG_c11937_g1_i1
348bp
 uncharacterized_protein_LOC101745347_isoform_X5_[Bombyx_mori]
FPKM:0.00 TPM:0.00
1762 A_BomoMSG_c11937_g1_i2
321bp
 uncharacterized_protein_LOC101745347_isoform_X5_[Bombyx_mori]
FPKM:2.80 TPM:1.46
1763 A_BomoMSG_c11939_g1_i1
265bp
FPKM:4.15 TPM:2.16
1764 A_BomoMSG_c11940_g1_i1
240bp
FPKM:1.97 TPM:1.02
1765 A_BomoMSG_c11941_g1_i1
761bp
 LOW_QUALITY_PROTEIN:_adenylate_cyclase_type_9_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004016 F adenylate cyclase activity
GO:0005524 F ATP binding
GO:0005622 C intracellular anatomical structure
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006171 P cAMP biosynthetic process
GO:0007189 P adenylate cyclase-activating G protein-coupled receptor signaling pathway
GO:0009190 P cyclic nucleotide biosynthetic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016829 F lyase activity
GO:0016849 F phosphorus-oxygen lyase activity
GO:0035556 P intracellular signal transduction
GO:0046872 F metal ion binding
GO:0071880 P adenylate cyclase-activating adrenergic receptor signaling pathway
FPKM:3.14 TPM:1.63
1766 A_BomoMSG_c11943_g1_i1
468bp
FPKM:11.12 TPM:5.78
1767 A_BomoMSG_c11944_g1_i1
323bp
 DENN_domain-containing_protein_1A_isoform_X4_[Bombyx_mori]
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006897 P endocytosis
GO:0008289 F lipid binding
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0017112 F guanyl-nucleotide exchange factor activity
GO:0017124 F SH3 domain binding
GO:0030054 C cell junction
GO:0030136 C clathrin-coated vesicle
GO:0030425 C dendrite
GO:0030665 C clathrin-coated vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0032266 F phosphatidylinositol-3-phosphate binding
GO:0032456 P endocytic recycling
GO:0032483 P regulation of Rab protein signal transduction
GO:0042734 C presynaptic membrane
GO:0043025 C neuronal cell body
GO:0043547 P positive regulation of GTPase activity
GO:0045202 C synapse
GO:0048488 P synaptic vesicle endocytosis
GO:1901981 F phosphatidylinositol phosphate binding
FPKM:1.73 TPM:0.90
1768 A_BomoMSG_c11945_g1_i1
5057bp
 plasma_membrane_calcium-transporting_ATPase_2_isoform_X8_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000902 P cell morphogenesis
GO:0005388 F P-type calcium transporter activity
GO:0005509 F calcium ion binding
GO:0005516 F calmodulin binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0005929 C cilium
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006816 P calcium ion transport
GO:0006874 P cellular calcium ion homeostasis
GO:0006996 P organelle organization
GO:0007595 P lactation
GO:0007605 P sensory perception of sound
GO:0007626 P locomotory behavior
GO:0008022 F protein C-terminus binding
GO:0008361 P regulation of cell size
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016324 C apical plasma membrane
GO:0016787 F hydrolase activity
GO:0021549 P cerebellum development
GO:0021692 P cerebellar Purkinje cell layer morphogenesis
GO:0021702 P cerebellar Purkinje cell differentiation
GO:0021707 P cerebellar granule cell differentiation
GO:0030054 C cell junction
GO:0030165 F PDZ domain binding
GO:0030182 P neuron differentiation
GO:0030899 F calcium-dependent ATPase activity
GO:0040011 P locomotion
GO:0042428 P serotonin metabolic process
GO:0042472 P inner ear morphogenesis
GO:0043025 C neuronal cell body
GO:0045202 C synapse
GO:0045299 P otolith mineralization
GO:0046068 P cGMP metabolic process
GO:0046872 F metal ion binding
GO:0048167 P regulation of synaptic plasticity
GO:0048839 P inner ear development
GO:0050808 P synapse organization
GO:0050885 P neuromuscular process controlling balance
GO:0050910 P detection of mechanical stimulus involved in sensory perception of sound
GO:0051480 P regulation of cytosolic calcium ion concentration
GO:0051928 P positive regulation of calcium ion transport
GO:0060088 P auditory receptor cell stereocilium organization
GO:0060113 P inner ear receptor cell differentiation
GO:0070062 C extracellular exosome
GO:0070588 P calcium ion transmembrane transport
GO:0090102 P cochlea development
FPKM:64.14 TPM:33.37
1769 A_BomoMSG_c11946_g1_i1
407bp
FPKM:2.33 TPM:1.21
1770 A_BomoMSG_c11948_g1_i1
267bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:5.51 TPM:2.87
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