SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMSG_c11945_g1_i1
Scaffold_idBomo_Chr27
NCBI non-redundant
(nr)		plasma_membrane_calcium-transporting_ATPase_2_isoform_X8_[Bombyx_mori]
Ontology
GO:0000166 F nucleotide binding
GO:0000902 P cell morphogenesis
GO:0005388 F P-type calcium transporter activity
GO:0005509 F calcium ion binding
GO:0005516 F calmodulin binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0005929 C cilium
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006816 P calcium ion transport
GO:0006874 P cellular calcium ion homeostasis
GO:0006996 P organelle organization
GO:0007595 P lactation
GO:0007605 P sensory perception of sound
GO:0007626 P locomotory behavior
GO:0008022 F protein C-terminus binding
GO:0008361 P regulation of cell size
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016324 C apical plasma membrane
GO:0016787 F hydrolase activity
GO:0021549 P cerebellum development
GO:0021692 P cerebellar Purkinje cell layer morphogenesis
GO:0021702 P cerebellar Purkinje cell differentiation
GO:0021707 P cerebellar granule cell differentiation
GO:0030054 C cell junction
GO:0030165 F PDZ domain binding
GO:0030182 P neuron differentiation
GO:0030899 F calcium-dependent ATPase activity
GO:0040011 P locomotion
GO:0042428 P serotonin metabolic process
GO:0042472 P inner ear morphogenesis
GO:0043025 C neuronal cell body
GO:0045202 C synapse
GO:0045299 P otolith mineralization
GO:0046068 P cGMP metabolic process
GO:0046872 F metal ion binding
GO:0048167 P regulation of synaptic plasticity
GO:0048839 P inner ear development
GO:0050808 P synapse organization
GO:0050885 P neuromuscular process controlling balance
GO:0050910 P detection of mechanical stimulus involved in sensory perception of sound
GO:0051480 P regulation of cytosolic calcium ion concentration
GO:0051928 P positive regulation of calcium ion transport
GO:0060088 P auditory receptor cell stereocilium organization
GO:0060113 P inner ear receptor cell differentiation
GO:0070062 C extracellular exosome
GO:0070588 P calcium ion transmembrane transport
GO:0090102 P cochlea development
Transcript
Level		FPKM:64.14 TPM:33.37
ORF EntryO_BomoMSG2823_5prime_partial:A_BomoMSG_c11945_g1_i1
Sequence
(Nucleotide)
CGTGTGCTCTTCCGATCTCGGACACGGTACGTGTGGTCGCGTGATGAGTTGGTGCTCGTA
GTATTTTAAGTTTGACATTTGGCGCGTTTTTCATTTAGGTTTATTAGAAATAATTAACGA
GAAAATCATAGGTTTAAGTTAGTGCAATCTGTGTATTTTCTATTTATTTCAAGTGTTCGA
CTAGTATTTCTGTGAATTCCTTTGACGTCGGCTGTGAAGTGGCAGAACGGGCTCGTGTAC
TTAGCTGTGTTGCCTAAGTTTTTGTGGTTTTTCTTTTCTCTTTTGTTCGTTTTCGGAGGT
ATCCCACAGCTGCCGAACACGACTAAGGTCGTAACCTGCAGCATAATAGGGAGCCATACG
CCGAGGCGGAAAAACGGGTGCGACACGCACTCGTGATCTAGAGGGTTGTCGGGCTTGGTG
CGGGCGGCGGCCGCGGGCCCGGCACCATGGCCACCGTGGAGGGAAGGCCGGCGCAATATG
GCGTCTCCCTTCGGCAGCTGCGCGAGCTGATGGAGACGCGCGGCGCCGAGGGCATGGCCA
AAATCAACGCGCTCGGTGGACCGCAAGAATTATGCAAGAAACTCTACACATCTCCCACAG
ACGGTCTTAGCGGTTCGAAGGCTGACCTGCAGCATCGGCGGGAAGTGTTCGGTTCAAACT
TGATCCCGCCGAAGCCACCCAAGACTTTCCTGACGCTAGTATGGGAGGCTCTGCAGGATG
TCACCCTTATTATCCTAGAAGTTGCTGCTGTTGTTTCATTAGGATTGAGTTTTTACAAGC
CCGCAGATGACCCCAATGATGCGGCACATTTGGACGAAGAGGAGGGCCACTACCAGTGGA
TCGAGGGTCTGGCCATCTTAATATCGGTTATAGTCGTCGTCATAGTAACAGCGTTTAATG
ATTACACGAAAGAAAGGCAATTCAGAGGTCTGCAGTCTCGGATAGAAGGCGAGCACAAGT
TCGCCGTGATCCGCGGCACGGAGGTCAAACAGGTGCCCATCAGCGAGATCGTCGTCGGCG
ACATATGTCAGATCAAGTACGGAGATCTGCTTCCGGCTGACGGTATCCTGCTGCAGAGCA
ACGATCTTAAGATTGACGAGTCATCCCTGACGGGAGAATCGGACCATGTCAAGAAGGGTG
AAACATTTGATCCCATGGTGCTATCCGGTACACACGTTATGGAAGGTTCCGGCAAGATGT
TAGTGACAGCCGTGGGGGTGAACTCCCAGGCCGGCATCATCTTCACGCTGCTCGGTGCCG
CTGTCGACAAGCAGGAGAAGGAAATTAAACAGAAGAAGAAAGGTGAGGAGGAGGGAGTGG
GGGGCGTGGGCGCCAACCACGCGCCGCCCGACGACAACCACGCGCCGCCCGCCGCCGACA
AGCCGCCGCCAGAGCCGCAACACAAGAAGGAGAAGTCCGTGCTGCAGGCCAAACTTACCA
AGCTCGCTATACAGATCGGTTACGCCGGCTCGACGATCGCCGTGCTCACGGTCATAATCC
TGGTCATACAGTTCTGCGTCCGGACGTTCGCCATAGAGGGCAAGCCGTGGAAGGCGACCT
ACATTAACAACCTGGTGAAGCACCTCATCATCGGTGTGACGGTGCTGGTCGTCGCCGTGC
CCGAGGGGCTGCCGCTCGCTGTCACACTCTCGCTTGCTTATTCCGTAAAGAAAATGATGA
AAGACAACAATCTGGTGCGCCACCTGGACGCCTGCGAGACCATGGGCAACGCCACCGCCA
TCTGCTCGGACAAGACCGGCACGCTGACCACCAACCGCATGACGGTCGTGCAGTCGTACA
TCTGCGAGAAGCTGTGCAAGGTGACGCCCAACTACCGCGACATCCCGCCGCCCGTCGCCG
ACCTCATCGTGCAGGGCGTGGCGCTCAACTCCGCCTTCACCTCCAGGATCATGCCATCAC
AAGATCCAACGATGCCATCCATGCAAGTCGGTAACAAAACTGAATGCGCCCTCCTCGGAT
TCGTCCTGGCTCTAGGGCAGAGCTACGAAGCCGTCAGAGAAAGTCATCCCGAAGAGTCGT
TCACCAGGGTGTACACCTTCAACTCGGTGCGGAAGAGCATGTCCACCGTCATACCGCACA
ACGGCGGCTACAGGCTCTACACTAAGGGAGCTTCGGAGATCGTGCTTAAAAAGTGCGCCT
TCATCTACGGGCACGAGGGCCGCCTGGAGAAGTTCACGCGCGACATGCAGGAGCGGCTCG
TGCGCCAGGTCATCGAGCCCATGGCCTGCGACGGGCTGCGGACCATCTCCGTGGCCTACC
GGGACTTCGTGCCCGGGAAGGCGGACATCAACCAGGTGCACGTGGACCAGGAGCCGCACT
GGGACGACGAGGACAACATCGTGAACAACCTGACCTGCCTCTGCGTTGTAGGGATCGAGG
ACCCCGTGAGGCCCGAGGTTCCAGAGGCCATCCGCAAGTGTCAGAAGGCCGGCATCACGG
TGCGCATGGTGACGGGAGACAACGTGAACACCGCGCGCTCCATCGCCATGAAGTGCGGCA
TCCTCAGGCCCACGGACGACTTCCTGGTGCTCGAGGGGAAGGAGTTCAACCAACGCATAC
GGGACGCCAACGGAGAGGTGCAGCAGCAGCTGGTGGACAAGGTGTGGCCCAGCCTGCGCG
TGCTGGCGCGCTCGTCGCCCACGGACAAGTACACGCTCGTCAAAGGCATGATCGAGTCCA
AGGCATTCGACACGCGCGAGGTGGTGGCCGTCACCGGGGACGGGACCAACGACGGACCCG
CGCTCAAGAAGGCCGACGTCGGATTCGCCATGGGCATCGCCGGCACGGACGTGGCTAAGG
AGGCGTCCGACATCATCCTGACGGACGACAACTTCTCGTCGATCGTGAAGGCGGTGATGT
GGGGCCGCAACGTGTACGACTCCATCGCCAAGTTCCTGCAGTTCCAGCTCACCGTCAACG
TGGTGGCCGTCATCGTGGCCTTCATCGGAGCCTGCGCCATCCAGGACAGCCCGCTCAAGG
CGGTCCAGATGCTGTGGGTGAACCTGATCATGGACACGCTGGCGTCCCTGGCGCTGGCCA
CGGAGATGCCGACCCCGGACTTGCTGCAGCGGAAGCCGTACGGACGGACCAAGCCCCTCA
TCTCGCGCACCATGATGAAGAACATCCTCGGACAGGCCATCTATCAGCTCTTCATCATAT
TCATGCTGTTGTTTGTCGGCGACAAGATGCTGAACATCCCGTCGGGCCGGTACCAGCCGC
TGGGCTCGGAGCCGACGCAGCACTTCACCATCATCTTCAACACGTTCGTGATGATGACCC
TCTTCAACGAGATCAACGCCAGGAAGATCCACGGCCAGCGGAACGTGTTCGAGGGACTCT
TCACCAACCCCATCTTCTATTCCATTTGGGTCGGGACTGCGCTGTCGCAGGTGGTCATCA
TCCAGTTCGGCGGCATGGCGTTCAGCACGGCGGGACTCACGATAGATCAGTGGCTGTGGT
GCTTGTTCTTCGGAGCGGGGACCTTGGTTTGGGGCCAGCTCGTCACCACGCTACCCACTA
GGAAAATACCCAAGACCCTCTCGTGGGGTCGCGGGCAGGCCGGCCAGGAGTGCGCCCCCG
CGCCGGACTACGACAACGAGCTCGACAAGAAGCCGCGCGCCGGACAGATCCTCTGGATCC
GCGGACTCACGCGCCTACAGACGCAGCTGCGAGTGGTGCGCGCCTTCAAGTCGACGCTGG
AGGACCTGGAGGAGCGCCTGTCGTCTCATTCGGCGGCGGCAGGGCTCCGCTCGCGGCTCA
GGGCCGCGCCGCAGGACTTCGCGTACATCGACGCGGACGAACCCCGCACTGAGACCACCA
TATTCTGAGCCCCGGAGACCCGTCTCTGTTCTCGTCTTCTCGACCTTGCGAACTTTACTA
CTATAAGTGTTGAAATGTTATAACGTCAGAGCCGCCCGGTCCCGAACAGTGCCTGTCGTG
GCACGCCGCGCGTCCCCCTCCCCTCTCCTCCCCTGTAGGCGACGTGACGCGTGACGCGCG
GGCGTGACGCGGCGCGTGCGTCACGCGGGTAGGCCGCATTCTCGTCAGCCGGCGGCGCGC
TCCGGAGCGGTGACGTTGTGTAAAGTTAGCTCGAGAGACGGACTCCGTTCGGATACAATT
TTACTGTCGTTAAACATTTAGAAAACTTTGAGATTTTACTAAAAGTAAACATTATAATTG
TTATTTTTCATCTAGTAGTCTTTCACGTATGTAGTGGATCACCGTTGCGGCCGGACAATG
AGGCCCACGGGCCCGTCTCGCCGGCAGCCGGCGTGTTTCGTTTCATAATAAATTTTGGGA
CCACTGCCCTTCCTGACGTACTTTTGGAATTATATATATATACATAAATACGTATCCGTA
CAGATTGATAACTTCGATAACTACTCGAATTCGATACATCCCCTCGAATATTGTTACGCG
TTACTTAAATAAGCTTTTCCCTAAAGTTTAGTATGAATGACGACCACACTTGTGCTTCTG
TTATTATTATTATTATTCTTTATTAAAGTTAAAATATTTCTTGTGTAAATTGAAAACGAC
GAAGTAATCTGTTCGTAACGTTCTGAGGAACTAAAAATATTTACATGTTCGAAATAAAGT
TTGAAACAAAAATAGCGTAGCATTTTCTTTCGTTCAAGTTTGTAATTGTTTTGGTGGGGG
CCGCCGATCTTAGAGAAATCGCTCTATTTCAGATGTTGACGGTAAGTTTAGGTCTGACTC
GCATAGGGAGAGTTAATTTGTAAGTATATTGGAGACCTAACGTAGGTAGCGGATGGTAAC
AGTAATGTCGTTAGAGCATGGGACAGTGATGTGTGCACGATCGCCATGGCTGCCACACCC
CCGGCACAGACACCTGTGCCCGGTGACGTCACCAGCCGCCATCTTGTCCGCGCCGCCTCG
ACAAAATGGCGGCTTCGCTTAGTTTGTAAGTACTGAGTATATATTGAACTTAACAAAATA
ATAATTATTAAACAATGTATATTTCTTGTTTTCGAAAAGAAATTTTTTGGTACAAAAGTT
GTTTCTTGTATTGTTTG
(5057 bp)

- SilkBase 1999-2023 -