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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1411 A_BomoMSG_c11533_g1_i2
2260bp
 tumor_protein_D54_isoform_X4_[Bombyx_mori]
FPKM:58.99 TPM:30.69
1412 A_BomoMSG_c11534_g1_i1
292bp
FPKM:1.69 TPM:0.88
1413 A_BomoMSG_c11534_g2_i1
202bp
FPKM:3.21 TPM:1.67
1414 A_BomoMSG_c11537_g1_i1
434bp
 glucose_dehydrogenase_[FAD,_quinone]_[Bombyx_mori]
GO:0004344 F glucose dehydrogenase activity
GO:0005576 C extracellular region
GO:0006006 P glucose metabolic process
GO:0008364 P pupal chitin-based cuticle development
GO:0016491 F oxidoreductase activity
GO:0016614 F oxidoreductase activity, acting on CH-OH group of donors
GO:0019233 P sensory perception of pain
GO:0042335 P cuticle development
GO:0046693 P sperm storage
GO:0050660 F flavin adenine dinucleotide binding
GO:0055114 P obsolete oxidation-reduction process
FPKM:2.95 TPM:1.54
1415 A_BomoMSG_c11539_g1_i1
362bp
 transmembrane_protein_198_[Bombyx_mori]
FPKM:2.83 TPM:1.47
1416 A_BomoMSG_c11542_g1_i1
429bp
 dual_specificity_protein_phosphatase_7_[Bombyx_mori]
GO:0000188 P obsolete inactivation of MAPK activity
GO:0002385 P mucosal immune response
GO:0004721 F phosphoprotein phosphatase activity
GO:0004725 F protein tyrosine phosphatase activity
GO:0005737 C cytoplasm
GO:0006470 P protein dephosphorylation
GO:0007428 P primary branching, open tracheal system
GO:0007474 P imaginal disc-derived wing vein specification
GO:0008138 F protein tyrosine/serine/threonine phosphatase activity
GO:0016311 P dephosphorylation
GO:0016337 P cell-cell adhesion
GO:0016787 F hydrolase activity
GO:0016791 F phosphatase activity
GO:0017017 F MAP kinase tyrosine/serine/threonine phosphatase activity
GO:0035160 P maintenance of epithelial integrity, open tracheal system
GO:0035335 P peptidyl-tyrosine dephosphorylation
GO:0042127 P regulation of cell population proliferation
GO:0043409 P negative regulation of MAPK cascade
FPKM:3.22 TPM:1.68
1417 A_BomoMSG_c11543_g1_i1
295bp
 probable_methyltransferase_TARBP1_[Bombyx_mori]
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006396 P RNA processing
GO:0008168 F methyltransferase activity
GO:0008173 F RNA methyltransferase activity
GO:0016423 F tRNA (guanine) methyltransferase activity
GO:0016740 F transferase activity
GO:0030488 P tRNA methylation
GO:0032259 P methylation
FPKM:4.13 TPM:2.15
1418 A_BomoMSG_c11545_g1_i1
313bp
 anoctamin-4_isoform_X3_[Bombyx_mori]
FPKM:2.57 TPM:1.34
1419 A_BomoMSG_c11546_g1_i1
433bp
 uncharacterized_protein_LOC110386572_[Bombyx_mori]
FPKM:2.54 TPM:1.32
1420 A_BomoMSG_c11547_g1_i1
358bp
FPKM:1.44 TPM:0.75
1421 A_BomoMSG_c11548_g1_i1
674bp
FPKM:2.29 TPM:1.19
1422 A_BomoMSG_c11549_g1_i1
371bp
FPKM:2.71 TPM:1.41
1423 A_BomoMSG_c1154_g1_i1
598bp
 tetratricopeptide_repeat_protein_37_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0035327 C euchromatin
GO:0055087 C Ski complex
FPKM:5.32 TPM:2.77
1424 A_BomoMSG_c1154_g1_i2
697bp
 tetratricopeptide_repeat_protein_37_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0035327 C euchromatin
GO:0055087 C Ski complex
FPKM:15.13 TPM:7.87
1425 A_BomoMSG_c11550_g1_i1
211bp
 endonuclease_and_reverse_transcriptase-like_protein_[Bombyx_mori]
FPKM:0.00 TPM:0.00
1426 A_BomoMSG_c11554_g1_i1
206bp
FPKM:12.08 TPM:6.28
1427 A_BomoMSG_c11556_g1_i1
208bp
 flocculation_protein_FLO11_isoform_X1_[Bombyx_mori]
FPKM:3.91 TPM:2.03
1428 A_BomoMSG_c11557_g1_i1
218bp
FPKM:30.60 TPM:15.92
1429 A_BomoMSG_c11559_g1_i1
1581bp
 phosphoglycerate_kinase_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004618 F phosphoglycerate kinase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0006096 P glycolytic process
GO:0007268 P chemical synaptic transmission
GO:0007520 P myoblast fusion
GO:0007525 P somatic muscle development
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0030018 C Z disc
GO:0031430 C M band
GO:0046716 P muscle cell cellular homeostasis
FPKM:71.92 TPM:37.41
1430 A_BomoMSG_c11560_g1_i1
447bp
 uncharacterized_protein_LOC101745877_isoform_X2_[Bombyx_mori]
FPKM:2.82 TPM:1.47
1431 A_BomoMSG_c11561_g1_i1
329bp
 condensin_complex_subunit_2_[Bombyx_mori]
FPKM:1.00 TPM:0.52
1432 A_BomoMSG_c11561_g1_i2
265bp
 condensin_complex_subunit_2_[Bombyx_mori]
FPKM:0.00 TPM:0.00
1433 A_BomoMSG_c11564_g1_i1
262bp
 LOW_QUALITY_PROTEIN:_collagen_alpha-1(I)_chain_[Bombyx_mori]
GO:0001501 P skeletal system development
GO:0001894 P tissue homeostasis
GO:0002062 P chondrocyte differentiation
GO:0005201 F extracellular matrix structural constituent
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0005581 C collagen trimer
GO:0007605 P sensory perception of sound
GO:0030199 P collagen fibril organization
GO:0046872 F metal ion binding
GO:0048705 P skeletal system morphogenesis
GO:0051216 P cartilage development
GO:0060021 P roof of mouth development
GO:0060023 P soft palate development
FPKM:4.26 TPM:2.22
1434 A_BomoMSG_c11565_g1_i1
316bp
 uncharacterized_protein_LOC101743232_[Bombyx_mori]
FPKM:2.17 TPM:1.13
1435 A_BomoMSG_c11566_g1_i1
446bp
 beclin_1-associated_autophagy-related_key_regulator_[Helicoverpa_armigera]
GO:0000045 P autophagosome assembly
GO:0000421 C autophagosome membrane
GO:0001932 P regulation of protein phosphorylation
GO:0001933 P negative regulation of protein phosphorylation
GO:0001934 P positive regulation of protein phosphorylation
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005776 C autophagosome
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005829 C cytosol
GO:0005930 C axoneme
GO:0006914 P autophagy
GO:0008333 P endosome to lysosome transport
GO:0009267 P cellular response to starvation
GO:0010508 P positive regulation of autophagy
GO:0010608 P posttranscriptional regulation of gene expression
GO:0016020 C membrane
GO:0016236 P macroautophagy
GO:0031410 C cytoplasmic vesicle
GO:0034045 C phagophore assembly site membrane
GO:0035032 C phosphatidylinositol 3-kinase complex, class III
GO:0042149 P cellular response to glucose starvation
GO:0043552 P positive regulation of phosphatidylinositol 3-kinase activity
GO:0044233 C mitochondria-associated endoplasmic reticulum membrane
GO:0045335 C phagocytic vesicle
GO:0061635 P regulation of protein complex stability
GO:0090207 P regulation of triglyceride metabolic process
GO:0097629 C extrinsic component of omegasome membrane
GO:0097632 C extrinsic component of phagophore assembly site membrane
GO:0098779 P positive regulation of mitophagy in response to mitochondrial depolarization
FPKM:6.07 TPM:3.16
1436 A_BomoMSG_c11568_g1_i1
6227bp
 fibrillin-1_[Bombyx_mori]
GO:0001527 C microfibril
GO:0005201 F extracellular matrix structural constituent
GO:0005509 F calcium ion binding
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0009653 P anatomical structure morphogenesis
GO:0090287 P regulation of cellular response to growth factor stimulus
FPKM:120.09 TPM:62.47
1437 A_BomoMSG_c11569_g1_i1
251bp
 PREDICTED:_collagen_alpha-1(IV)_chain_[Papilio_polytes]
FPKM:3.53 TPM:1.84
1438 A_BomoMSG_c11570_g1_i1
2107bp
 cytosolic_non-specific_dipeptidase_[Bombyx_mori]
GO:0004180 F carboxypeptidase activity
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006508 P proteolysis
GO:0008152 P metabolic process
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0016787 F hydrolase activity
GO:0016805 F dipeptidase activity
GO:0034701 F tripeptidase activity
GO:0046872 F metal ion binding
GO:0070062 C extracellular exosome
GO:0102008 F dipeptidase activity
FPKM:118.38 TPM:61.58
1439 A_BomoMSG_c11571_g1_i1
489bp
 Calcium-activated_potassium_channel_slowpoke_[Papilio_xuthus]
GO:0005216 F ion channel activity
GO:0005244 F voltage-gated ion channel activity
GO:0005249 F voltage-gated potassium channel activity
GO:0005267 F potassium channel activity
GO:0005515 F protein binding
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006813 P potassium ion transport
GO:0007623 P circadian rhythm
GO:0008076 C voltage-gated potassium channel complex
GO:0008582 P regulation of synaptic assembly at neuromuscular junction
GO:0015269 F calcium-activated potassium channel activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0034765 P regulation of ion transmembrane transport
GO:0042493 P response to xenobiotic stimulus
GO:0043005 C neuron projection
GO:0043025 C neuronal cell body
GO:0045433 P male courtship behavior, veined wing generated song production
GO:0048512 P circadian behavior
GO:0055085 P transmembrane transport
GO:0060072 F large conductance calcium-activated potassium channel activity
GO:0071805 P potassium ion transmembrane transport
GO:1900074 P negative regulation of neuromuscular synaptic transmission
FPKM:1.41 TPM:0.74
1440 A_BomoMSG_c11572_g1_i1
1601bp
 pinin_[Bombyx_mori]
GO:0000398 P mRNA splicing, via spliceosome
GO:0003677 F DNA binding
GO:0005198 F structural molecule activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005882 C intermediate filament
GO:0005886 C plasma membrane
GO:0005911 C cell-cell junction
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0007155 P cell adhesion
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0016607 C nuclear speck
GO:0030054 C cell junction
GO:0030057 C desmosome
GO:0035145 C exon-exon junction complex
GO:0044822 F RNA binding
GO:0071013 C catalytic step 2 spliceosome
FPKM:25.37 TPM:13.20
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