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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1441 A_BomoMSG_c11573_g1_i1
370bp
FPKM:1.91 TPM:0.99
1442 A_BomoMSG_c11573_g2_i1
399bp
FPKM:2.13 TPM:1.11
1443 A_BomoMSG_c11573_g2_i2
218bp
FPKM:0.12 TPM:0.06
1444 A_BomoMSG_c11574_g1_i1
304bp
 ATP-binding_cassette_sub-family_G_member_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016887 F ATP hydrolysis activity
GO:0042626 F ATPase-coupled transmembrane transporter activity
GO:0055085 P transmembrane transport
FPKM:1.94 TPM:1.01
1445 A_BomoMSG_c11575_g1_i1
1157bp
 pre-mRNA_3'-end-processing_factor_FIP1_isoform_X1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0003723 F RNA binding
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0006397 P mRNA processing
GO:0008150 P biological_process
FPKM:16.50 TPM:8.58
1446 A_BomoMSG_c11576_g1_i1
406bp
FPKM:1.40 TPM:0.73
1447 A_BomoMSG_c11577_g1_i1
518bp
 uncharacterized_protein_LOC101737697_[Bombyx_mori]
FPKM:2.28 TPM:1.19
1448 A_BomoMSG_c11578_g1_i1
463bp
 pol_protein_[Danaus_plexippus_plexippus]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004523 F RNA-DNA hybrid ribonuclease activity
GO:0004533 F exoribonuclease H activity
GO:0005198 F structural molecule activity
GO:0005622 C intracellular anatomical structure
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0006508 P proteolysis
GO:0008152 P metabolic process
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016020 C membrane
GO:0016032 P viral process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0019012 C virion component
GO:0019013 C viral nucleocapsid
GO:0019028 C viral capsid
GO:0019076 P viral release from host cell
GO:0020002 C host cell plasma membrane
GO:0030430 C host cell cytoplasm
GO:0033644 C host cell membrane
GO:0039657 P suppression by virus of host gene expression
GO:0042025 C host cell nucleus
GO:0046718 P viral entry into host cell
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:0075713 P establishment of integrated proviral latency
GO:0075732 P viral penetration into host nucleus
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
FPKM:3.64 TPM:1.89
1449 A_BomoMSG_c11579_g1_i1
270bp
FPKM:5.47 TPM:2.85
1450 A_BomoMSG_c1157_g1_i1
228bp
FPKM:3.00 TPM:1.56
1451 A_BomoMSG_c11580_g1_i1
773bp
FPKM:2.98 TPM:1.55
1452 A_BomoMSG_c11582_g1_i1
1056bp
 uncharacterized_protein_LOC110374467_[Helicoverpa_armigera]
FPKM:17.65 TPM:9.18
1453 A_BomoMSG_c11583_g1_i1
273bp
 WW_domain-binding_protein_11_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0006364 P rRNA processing
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0045292 P mRNA cis splicing, via spliceosome
FPKM:6.31 TPM:3.28
1454 A_BomoMSG_c11584_g1_i1
2660bp
 protein_TRC8_homolog_[Bombyx_mori]
GO:0000209 P protein polyubiquitination
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0007418 P ventral midline development
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016567 P protein ubiquitination
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0045926 P negative regulation of growth
GO:0046872 F metal ion binding
GO:0061630 F ubiquitin protein ligase activity
FPKM:31.92 TPM:16.61
1455 A_BomoMSG_c11585_g1_i1
242bp
 uncharacterized_protein_LOC110384916,_partial_[Bombyx_mori]
FPKM:1.93 TPM:1.00
1456 A_BomoMSG_c11586_g1_i1
293bp
FPKM:5.86 TPM:3.05
1457 A_BomoMSG_c11587_g1_i1
628bp
 uncharacterized_protein_LOC101736981_isoform_X1_[Bombyx_mori]
FPKM:1.50 TPM:0.78
1458 A_BomoMSG_c11589_g1_i1
458bp
FPKM:3.11 TPM:1.62
1459 A_BomoMSG_c1158_g1_i1
354bp
FPKM:3.53 TPM:1.83
1460 A_BomoMSG_c11590_g1_i1
857bp
 testis-expressed_protein_10_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0031965 C nuclear membrane
GO:0071339 C MLL1 complex
FPKM:17.70 TPM:9.21
1461 A_BomoMSG_c11591_g1_i1
970bp
 probable_ribosome_production_factor_1_[Bombyx_mori]
GO:0000027 P ribosomal large subunit assembly
GO:0000460 P maturation of 5.8S rRNA
GO:0000470 P maturation of LSU-rRNA
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0019843 F rRNA binding
GO:0030687 C preribosome, large subunit precursor
GO:0042134 F rRNA primary transcript binding
GO:0042254 P ribosome biogenesis
FPKM:18.77 TPM:9.76
1462 A_BomoMSG_c11593_g1_i1
340bp
 uncharacterized_protein_LOC110385512,_partial_[Bombyx_mori]
FPKM:4.10 TPM:2.13
1463 A_BomoMSG_c11594_g1_i1
369bp
FPKM:5.20 TPM:2.71
1464 A_BomoMSG_c11596_g1_i1
314bp
 ubiquitin_and_ribosomal_protein_S27a_[Bombyx_mori]
GO:0003735 F structural constituent of ribosome
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005840 C ribosome
GO:0006412 P translation
GO:0030529 C ribonucleoprotein complex
GO:0046872 F metal ion binding
FPKM:2.19 TPM:1.14
1465 A_BomoMSG_c11596_g2_i1
587bp
 ubiquitin_and_ribosomal_protein_S27a_[Bombyx_mori]
GO:0003735 F structural constituent of ribosome
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005840 C ribosome
GO:0006412 P translation
GO:0030529 C ribonucleoprotein complex
GO:0046872 F metal ion binding
FPKM:2662.04 TPM:1384.84
1466 A_BomoMSG_c11596_g3_i1
677bp
FPKM:33.07 TPM:17.21
1467 A_BomoMSG_c11599_g1_i1
237bp
FPKM:2.71 TPM:1.41
1468 A_BomoMSG_c115_g1_i1
358bp
FPKM:3.75 TPM:1.95
1469 A_BomoMSG_c11600_g1_i1
283bp
 acetyl-CoA_carboxylase_isoform_X3_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003824 F catalytic activity
GO:0003989 F acetyl-CoA carboxylase activity
GO:0004075 F biotin carboxylase activity
GO:0005524 F ATP binding
GO:0005623 C obsolete cell
GO:0005737 C cytoplasm
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006633 P fatty acid biosynthetic process
GO:0008152 P metabolic process
GO:0016874 F ligase activity
GO:0046872 F metal ion binding
GO:2001295 P malonyl-CoA biosynthetic process
FPKM:5.48 TPM:2.85
1470 A_BomoMSG_c11601_g1_i1
1579bp
 programmed_cell_death_protein_4-like_[Bombyx_mori]
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0007569 P cell aging
GO:0043508 P negative regulation of JUN kinase activity
GO:0045892 P negative regulation of transcription, DNA-templated
FPKM:37.99 TPM:19.76
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