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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1171 A_BomoMSG_c11289_g1_i1
632bp
 protein_kinase_C_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0002376 P immune system process
GO:0003785 F actin monomer binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004697 F protein kinase C activity
GO:0004699 F calcium-independent protein kinase C activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0006468 P protein phosphorylation
GO:0007049 P cell cycle
GO:0007155 P cell adhesion
GO:0010634 P positive regulation of epithelial cell migration
GO:0010763 P positive regulation of fibroblast migration
GO:0016020 C membrane
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0030838 P positive regulation of actin filament polymerization
GO:0031663 P lipopolysaccharide-mediated signaling pathway
GO:0032467 P positive regulation of cytokinesis
GO:0035556 P intracellular signal transduction
GO:0035669 P TRAM-dependent toll-like receptor 4 signaling pathway
GO:0046872 F metal ion binding
GO:0048471 C perinuclear region of cytoplasm
GO:0051301 P cell division
GO:0071944 C cell periphery
GO:0090303 P positive regulation of wound healing
FPKM:2.86 TPM:1.49
1172 A_BomoMSG_c1128_g1_i1
226bp
FPKM:2.31 TPM:1.20
1173 A_BomoMSG_c11290_g1_i1
827bp
 nuclear_orphan_receptor_isoform_X1_[Bombyx_mori]
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003707 F steroid hormone receptor activity
GO:0004879 F nuclear receptor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007424 P open tracheal system development
GO:0008270 F zinc ion binding
GO:0022008 P neurogenesis
GO:0030522 P intracellular receptor signaling pathway
GO:0035002 P liquid clearance, open tracheal system
GO:0035071 P salivary gland cell autophagic cell death
GO:0043401 P steroid hormone mediated signaling pathway
GO:0043565 F sequence-specific DNA binding
GO:0045089 P positive regulation of innate immune response
GO:0046872 F metal ion binding
GO:0048102 P autophagic cell death
GO:0050829 P defense response to Gram-negative bacterium
FPKM:3.98 TPM:2.07
1174 A_BomoMSG_c11291_g1_i1
436bp
FPKM:3.14 TPM:1.64
1175 A_BomoMSG_c11292_g1_i1
251bp
 hypothetical_protein_WH47_04097_[Habropoda_laboriosa]
FPKM:3.53 TPM:1.84
1176 A_BomoMSG_c11294_g1_i1
506bp
FPKM:1.51 TPM:0.79
1177 A_BomoMSG_c11295_g1_i1
533bp
 poly(A)_RNA_polymerase_gld-2_homolog_A_isoform_X1_[Bombyx_mori]
FPKM:2.66 TPM:1.38
1178 A_BomoMSG_c11296_g1_i1
429bp
 LOW_QUALITY_PROTEIN:_chondroitin_sulfate_proteoglycan_4_[Bombyx_mori]
GO:0001525 P angiogenesis
GO:0004871 F obsolete signal transducer activity
GO:0005518 F collagen binding
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006954 P inflammatory response
GO:0007165 P signal transduction
GO:0007275 P multicellular organism development
GO:0009986 C cell surface
GO:0010226 P response to lithium ion
GO:0010977 P negative regulation of neuron projection development
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016322 P neuron remodeling
GO:0016324 C apical plasma membrane
GO:0016477 P cell migration
GO:0030154 P cell differentiation
GO:0031258 C lamellipodium membrane
GO:0042995 C cell projection
GO:0048771 P tissue remodeling
FPKM:3.01 TPM:1.56
1179 A_BomoMSG_c11297_g1_i1
243bp
FPKM:8.27 TPM:4.30
1180 A_BomoMSG_c11298_g1_i1
322bp
 titin-like_[Helicoverpa_armigera]
FPKM:4.18 TPM:2.18
1181 A_BomoMSG_c11299_g1_i1
212bp
FPKM:5.53 TPM:2.88
1182 A_BomoMSG_c112_g1_i1
499bp
 LOW_QUALITY_PROTEIN:_neuroblastoma-amplified_sequence_[Bombyx_mori]
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000956 P nuclear-transcribed mRNA catabolic process
GO:0005783 C endoplasmic reticulum
GO:0006810 P transport
GO:0006890 P retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
GO:0015031 P protein transport
GO:0043009 P chordate embryonic development
GO:2000623 P negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
FPKM:2.75 TPM:1.43
1183 A_BomoMSG_c11300_g1_i1
242bp
FPKM:6.43 TPM:3.35
1184 A_BomoMSG_c11301_g1_i1
234bp
FPKM:4.20 TPM:2.19
1185 A_BomoMSG_c11302_g1_i1
241bp
FPKM:2.60 TPM:1.35
1186 A_BomoMSG_c11303_g1_i1
1772bp
 aspartate--tRNA_ligase,_cytoplasmic_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0004812 F aminoacyl-tRNA ligase activity
GO:0004815 F aspartate-tRNA ligase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0006412 P translation
GO:0006418 P tRNA aminoacylation for protein translation
GO:0006422 P aspartyl-tRNA aminoacylation
GO:0016874 F ligase activity
FPKM:5.66 TPM:2.94
1187 A_BomoMSG_c11303_g1_i2
1925bp
 aspartate--tRNA_ligase,_cytoplasmic_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0004812 F aminoacyl-tRNA ligase activity
GO:0004815 F aspartate-tRNA ligase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0006412 P translation
GO:0006418 P tRNA aminoacylation for protein translation
GO:0006422 P aspartyl-tRNA aminoacylation
GO:0016874 F ligase activity
FPKM:31.80 TPM:16.54
1188 A_BomoMSG_c11304_g1_i1
233bp
FPKM:2.83 TPM:1.47
1189 A_BomoMSG_c11305_g1_i1
401bp
FPKM:4.06 TPM:2.11
1190 A_BomoMSG_c11306_g1_i1
386bp
 putative_uncharacterized_protein_DDB_G0282499_[Bombyx_mori]
FPKM:3.30 TPM:1.72
1191 A_BomoMSG_c11308_g1_i1
1353bp
 unknown_unsecreted_protein_[Papilio_xuthus]
GO:0000398 P mRNA splicing, via spliceosome
GO:0000993 F RNA polymerase II complex binding
GO:0003729 F mRNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005849 C mRNA cleavage factor complex
GO:0006369 P termination of RNA polymerase II transcription
GO:0006378 P mRNA polyadenylation
GO:0006379 P mRNA cleavage
GO:0006397 P mRNA processing
GO:0031124 P mRNA 3'-end processing
FPKM:25.48 TPM:13.26
1192 A_BomoMSG_c11309_g1_i1
543bp
 uncharacterized_protein_LOC105842300_[Bombyx_mori]
FPKM:3.66 TPM:1.90
1193 A_BomoMSG_c11310_g1_i1
215bp
 zinc_finger_protein_436_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
FPKM:17.70 TPM:9.21
1194 A_BomoMSG_c11310_g1_i2
294bp
 zinc_finger_protein_436_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
FPKM:1.86 TPM:0.97
1195 A_BomoMSG_c11310_g1_i3
227bp
 zinc_finger_protein_436_[Bombyx_mori]
FPKM:4.96 TPM:2.58
1196 A_BomoMSG_c11311_g1_i1
281bp
FPKM:11.41 TPM:5.94
1197 A_BomoMSG_c11312_g1_i1
729bp
FPKM:32.81 TPM:17.07
1198 A_BomoMSG_c11313_g1_i1
459bp
FPKM:6.59 TPM:3.43
1199 A_BomoMSG_c11314_g1_i1
244bp
FPKM:10.09 TPM:5.25
1200 A_BomoMSG_c11315_g1_i1
922bp
 cell_division_cycle_25_isoform_X1_[Bombyx_mori]
GO:0000086 P G2/M transition of mitotic cell cycle
GO:0000278 P mitotic cell cycle
GO:0004721 F phosphoprotein phosphatase activity
GO:0004725 F protein tyrosine phosphatase activity
GO:0004726 F non-membrane spanning protein tyrosine phosphatase activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006470 P protein dephosphorylation
GO:0007030 P Golgi organization
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0007088 P regulation of mitotic nuclear division
GO:0007099 P centriole replication
GO:0007346 P regulation of mitotic cell cycle
GO:0007369 P gastrulation
GO:0007422 P peripheral nervous system development
GO:0007424 P open tracheal system development
GO:0007488 P histoblast morphogenesis
GO:0007498 P mesoderm development
GO:0008138 F protein tyrosine/serine/threonine phosphatase activity
GO:0008283 P cell population proliferation
GO:0008284 P positive regulation of cell population proliferation
GO:0016787 F hydrolase activity
GO:0035335 P peptidyl-tyrosine dephosphorylation
GO:0045792 P negative regulation of cell size
GO:0045930 P negative regulation of mitotic cell cycle
GO:0045931 P positive regulation of mitotic cell cycle
GO:0045977 P positive regulation of mitotic cell cycle, embryonic
GO:0046331 P lateral inhibition
GO:0051301 P cell division
GO:0060305 P regulation of cell diameter
FPKM:2.71 TPM:1.41
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