SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search Assembled RNA-Seq

previous next from show/47701
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1201 A_BomoMSG_c11316_g1_i1
514bp
FPKM:2.30 TPM:1.20
1202 A_BomoMSG_c11316_g1_i2
284bp
FPKM:0.00 TPM:0.00
1203 A_BomoMSG_c11316_g2_i1
371bp
FPKM:2.98 TPM:1.55
1204 A_BomoMSG_c11317_g1_i1
459bp
FPKM:4.07 TPM:2.12
1205 A_BomoMSG_c11318_g1_i1
370bp
 trypsin_inhibitor-like_[Bombyx_mori]
GO:0004867 F serine-type endopeptidase inhibitor activity
GO:0007275 P multicellular organism development
GO:0010466 P negative regulation of peptidase activity
GO:0010951 P negative regulation of endopeptidase activity
GO:0030414 F peptidase inhibitor activity
FPKM:48.53 TPM:25.25
1206 A_BomoMSG_c11318_g1_i2
583bp
 trypsin_inhibitor-like_[Bombyx_mori]
GO:0004867 F serine-type endopeptidase inhibitor activity
GO:0007275 P multicellular organism development
GO:0010466 P negative regulation of peptidase activity
GO:0010951 P negative regulation of endopeptidase activity
GO:0030414 F peptidase inhibitor activity
FPKM:301.31 TPM:156.75
1207 A_BomoMSG_c11319_g1_i1
747bp
 3'(2'),5'-bisphosphate_nucleotidase_1_isoform_X1_[Bombyx_mori]
GO:0000287 F magnesium ion binding
GO:0004441 F inositol-1,4-bisphosphate 1-phosphatase activity
GO:0005575 C cellular_component
GO:0005737 C cytoplasm
GO:0006139 P nucleobase-containing compound metabolic process
GO:0008150 P biological_process
GO:0008441 F 3'(2'),5'-bisphosphate nucleotidase activity
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0046854 P phosphatidylinositol phosphate biosynthetic process
GO:0046872 F metal ion binding
FPKM:1.78 TPM:0.93
1208 A_BomoMSG_c11319_g1_i2
1211bp
 3'(2'),5'-bisphosphate_nucleotidase_1_isoform_X2_[Bombyx_mori]
GO:0000287 F magnesium ion binding
GO:0004441 F inositol-1,4-bisphosphate 1-phosphatase activity
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006139 P nucleobase-containing compound metabolic process
GO:0007399 P nervous system development
GO:0008441 F 3'(2'),5'-bisphosphate nucleotidase activity
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0046854 P phosphatidylinositol phosphate biosynthetic process
GO:0046872 F metal ion binding
GO:0050427 P 3'-phosphoadenosine 5'-phosphosulfate metabolic process
GO:0070062 C extracellular exosome
FPKM:25.20 TPM:13.11
1209 A_BomoMSG_c11320_g1_i1
1271bp
 cytoplasmic_dynein_1_light_intermediate_chain_2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000226 P microtubule cytoskeleton organization
GO:0003774 F cytoskeletal motor activity
GO:0003777 F microtubule motor activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005868 C cytoplasmic dynein complex
GO:0005874 C microtubule
GO:0006810 P transport
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0007018 P microtubule-based movement
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0019886 P antigen processing and presentation of exogenous peptide antigen via MHC class II
GO:0030286 C dynein complex
GO:0051642 P centrosome localization
FPKM:25.25 TPM:13.14
1210 A_BomoMSG_c11321_g1_i1
207bp
 sulfite_oxidase_isoform_X2_[Bombyx_mori]
FPKM:10.91 TPM:5.67
1211 A_BomoMSG_c11323_g1_i1
621bp
 PREDICTED:_uncharacterized_protein_LOC100569746_[Acyrthosiphon_pisum]
FPKM:7.63 TPM:3.97
1212 A_BomoMSG_c11324_g1_i1
512bp
 transmembrane_protein_131-like,_partial_[Bombyx_mori]
FPKM:4.30 TPM:2.24
1213 A_BomoMSG_c11325_g1_i1
494bp
FPKM:4.88 TPM:2.54
1214 A_BomoMSG_c11326_g1_i1
510bp
 uncharacterized_protein_LOC101743059_[Bombyx_mori]
FPKM:3.99 TPM:2.08
1215 A_BomoMSG_c11328_g1_i1
403bp
FPKM:2.61 TPM:1.36
1216 A_BomoMSG_c11329_g1_i1
822bp
 facilitated_trehalose_transporter_Tret1_isoform_X1_[Bombyx_mori]
GO:0005215 F transporter activity
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0008643 P carbohydrate transport
GO:0015574 F trehalose transmembrane transporter activity
GO:0015767 P lactose transport
GO:0015768 P maltose transport
GO:0015770 P sucrose transport
GO:0015771 P trehalose transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022857 F transmembrane transporter activity
GO:0022891 F transmembrane transporter activity
GO:0055085 P transmembrane transport
FPKM:2.58 TPM:1.34
1217 A_BomoMSG_c1132_g1_i1
227bp
 Membrane-bound_transcription_factor_site-1_protease_[Papilio_xuthus]
GO:0000139 C Golgi membrane
GO:0004175 F endopeptidase activity
GO:0004252 F serine-type endopeptidase activity
GO:0005783 C endoplasmic reticulum
GO:0005788 C endoplasmic reticulum lumen
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0005795 C Golgi stack
GO:0006508 P proteolysis
GO:0006629 P lipid metabolic process
GO:0007040 P lysosome organization
GO:0008202 P steroid metabolic process
GO:0008203 P cholesterol metabolic process
GO:0008233 F peptidase activity
GO:0008236 F serine-type peptidase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0031293 P membrane protein intracellular domain proteolysis
GO:0034976 P response to endoplasmic reticulum stress
GO:0036500 P ATF6-mediated unfolded protein response
GO:0042990 P obsolete regulation of transcription factor import into nucleus
FPKM:5.32 TPM:2.77
1218 A_BomoMSG_c11330_g1_i1
1872bp
 rab11_family-interacting_protein_4A_isoform_X3_[Bombyx_mori]
GO:0000910 P cytokinesis
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0006810 P transport
GO:0007049 P cell cycle
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
GO:0017137 F small GTPase binding
GO:0030306 F small GTPase binding
GO:0030496 C midbody
GO:0032154 C cleavage furrow
GO:0032456 P endocytic recycling
GO:0042803 F protein homodimerization activity
GO:0043231 C intracellular membrane-bounded organelle
GO:0045171 C intercellular bridge
GO:0046872 F metal ion binding
GO:0051301 P cell division
GO:0051959 F dynein light intermediate chain binding
GO:0055037 C recycling endosome
GO:0055038 C recycling endosome membrane
GO:0061512 P protein localization to cilium
GO:0070164 P negative regulation of adiponectin secretion
FPKM:27.51 TPM:14.31
1219 A_BomoMSG_c11330_g1_i2
1920bp
 rab11_family-interacting_protein_4A_isoform_X1_[Bombyx_mori]
GO:0000910 P cytokinesis
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0006810 P transport
GO:0007049 P cell cycle
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
GO:0017137 F small GTPase binding
GO:0030306 F small GTPase binding
GO:0030496 C midbody
GO:0032154 C cleavage furrow
GO:0032456 P endocytic recycling
GO:0042803 F protein homodimerization activity
GO:0043231 C intracellular membrane-bounded organelle
GO:0045171 C intercellular bridge
GO:0046872 F metal ion binding
GO:0051301 P cell division
GO:0051959 F dynein light intermediate chain binding
GO:0055037 C recycling endosome
GO:0055038 C recycling endosome membrane
GO:0061512 P protein localization to cilium
GO:0070164 P negative regulation of adiponectin secretion
FPKM:4.56 TPM:2.37
1220 A_BomoMSG_c11331_g1_i1
443bp
FPKM:2.66 TPM:1.38
1221 A_BomoMSG_c11333_g1_i1
704bp
FPKM:2.81 TPM:1.46
1222 A_BomoMSG_c11335_g1_i1
398bp
FPKM:7.73 TPM:4.02
1223 A_BomoMSG_c11336_g1_i1
392bp
 uncharacterized_protein_LOC101744180_[Bombyx_mori]
FPKM:0.80 TPM:0.42
1224 A_BomoMSG_c11336_g1_i2
412bp
 uncharacterized_protein_LOC101744180_[Bombyx_mori]
FPKM:1.78 TPM:0.92
1225 A_BomoMSG_c11337_g1_i1
1226bp
FPKM:23.09 TPM:12.01
1226 A_BomoMSG_c11338_g1_i1
597bp
FPKM:4.29 TPM:2.23
1227 A_BomoMSG_c11339_g1_i1
334bp
FPKM:7.82 TPM:4.07
1228 A_BomoMSG_c11340_g1_i1
244bp
FPKM:8.82 TPM:4.59
1229 A_BomoMSG_c11341_g1_i1
997bp
 cyclin-T_[Bombyx_mori]
GO:0000278 P mitotic cell cycle
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0005703 C polytene chromosome puff
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006468 P protein phosphorylation
GO:0007015 P actin filament organization
GO:0007419 P ventral cord development
GO:0008023 C transcription elongation factor complex
GO:0008024 C cyclin/CDK positive transcription elongation factor complex
GO:0008353 F RNA polymerase II CTD heptapeptide repeat kinase activity
GO:0008360 P regulation of cell shape
GO:0009408 P response to heat
GO:0016538 F cyclin-dependent protein serine/threonine kinase regulator activity
GO:0019901 F protein kinase binding
GO:0032783 C super elongation complex
GO:0045737 P positive regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:1901409 P positive regulation of phosphorylation of RNA polymerase II C-terminal domain
FPKM:3.68 TPM:1.91
1230 A_BomoMSG_c11342_g1_i1
558bp
FPKM:3.96 TPM:2.06
previous next from show/47701

- SilkBase 1999-2023 -