SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search Assembled RNA-Seq

previous next from show/47701
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1141 A_BomoMSG_c11255_g1_i1
344bp
FPKM:1.55 TPM:0.80
1142 A_BomoMSG_c11256_g1_i1
868bp
FPKM:3.50 TPM:1.82
1143 A_BomoMSG_c11257_g1_i1
519bp
FPKM:6.98 TPM:3.63
1144 A_BomoMSG_c11259_g1_i1
232bp
FPKM:0.00 TPM:0.00
1145 A_BomoMSG_c11259_g1_i2
293bp
FPKM:2.09 TPM:1.09
1146 A_BomoMSG_c1125_g1_i1
252bp
 microtubule-actin_cross-linking_factor_1,_isoforms_1/2/3/5_[Bombyx_mori]
FPKM:6.41 TPM:3.33
1147 A_BomoMSG_c11260_g1_i1
482bp
FPKM:6.50 TPM:3.38
1148 A_BomoMSG_c11261_g1_i1
310bp
FPKM:3.74 TPM:1.95
1149 A_BomoMSG_c11263_g1_i1
4488bp
 multidrug_resistance-associated_protein_4_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0006810 P transport
GO:0007275 P multicellular organism development
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016887 F ATP hydrolysis activity
GO:0042626 F ATPase-coupled transmembrane transporter activity
GO:0055085 P transmembrane transport
FPKM:32.35 TPM:16.83
1150 A_BomoMSG_c11265_g1_i1
571bp
FPKM:4.98 TPM:2.59
1151 A_BomoMSG_c11266_g1_i1
474bp
 magnesium_transporter_NIPA2_[Bombyx_mori]
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0015095 F magnesium ion transmembrane transporter activity
GO:0015693 P magnesium ion transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:1903830 P magnesium ion transmembrane transport
FPKM:7.40 TPM:3.85
1152 A_BomoMSG_c11267_g1_i1
885bp
 E3_ubiquitin-protein_ligase_TRIM33_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0003677 F DNA binding
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0017015 P regulation of transforming growth factor beta receptor signaling pathway
GO:0030514 P negative regulation of BMP signaling pathway
GO:0043231 C intracellular membrane-bounded organelle
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0070410 F co-SMAD binding
GO:0070412 F R-SMAD binding
FPKM:3.18 TPM:1.65
1153 A_BomoMSG_c11269_g1_i1
314bp
 transferrin_precursor_[Bombyx_mori]
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0006810 P transport
GO:0006811 P ion transport
GO:0046872 F metal ion binding
GO:0055072 P iron ion homeostasis
FPKM:1.10 TPM:0.57
1154 A_BomoMSG_c1126_g1_i1
402bp
 uncharacterized_protein_LOC101740603_[Bombyx_mori]
GO:0005576 C extracellular region
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005911 C cell-cell junction
GO:0007155 P cell adhesion
FPKM:1.90 TPM:0.99
1155 A_BomoMSG_c11270_g1_i1
418bp
 papilin-like_[Helicoverpa_armigera]
GO:0004222 F metalloendopeptidase activity
GO:0004867 F serine-type endopeptidase inhibitor activity
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0005604 C basement membrane
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0008270 F zinc ion binding
GO:0010466 P negative regulation of peptidase activity
GO:0010951 P negative regulation of endopeptidase activity
GO:0030414 F peptidase inhibitor activity
GO:0031012 C extracellular matrix
FPKM:0.00 TPM:0.00
1156 A_BomoMSG_c11270_g1_i2
795bp
 papilin-like_[Helicoverpa_armigera]
GO:0004222 F metalloendopeptidase activity
GO:0004867 F serine-type endopeptidase inhibitor activity
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0005604 C basement membrane
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0008270 F zinc ion binding
GO:0010466 P negative regulation of peptidase activity
GO:0010951 P negative regulation of endopeptidase activity
GO:0030414 F peptidase inhibitor activity
GO:0031012 C extracellular matrix
FPKM:2.41 TPM:1.26
1157 A_BomoMSG_c11271_g1_i1
367bp
FPKM:2.21 TPM:1.15
1158 A_BomoMSG_c11274_g1_i1
472bp
FPKM:2.98 TPM:1.55
1159 A_BomoMSG_c11275_g1_i1
606bp
FPKM:1.84 TPM:0.96
1160 A_BomoMSG_c11277_g1_i1
577bp
FPKM:2.67 TPM:1.39
1161 A_BomoMSG_c11278_g1_i1
660bp
FPKM:1.76 TPM:0.92
1162 A_BomoMSG_c11279_g1_i1
327bp
FPKM:3.39 TPM:1.76
1163 A_BomoMSG_c11280_g1_i1
509bp
FPKM:5.01 TPM:2.60
1164 A_BomoMSG_c11281_g1_i1
325bp
FPKM:2.40 TPM:1.25
1165 A_BomoMSG_c11282_g1_i1
234bp
FPKM:2.80 TPM:1.46
1166 A_BomoMSG_c11283_g1_i1
936bp
 dual_oxidase_maturation_factor_1_[Bombyx_mori]
GO:0005789 C endoplasmic reticulum membrane
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0042743 P hydrogen peroxide metabolic process
GO:0045666 P positive regulation of neuron differentiation
GO:0050727 P regulation of inflammatory response
GO:2000379 P positive regulation of reactive oxygen species metabolic process
GO:2000609 P regulation of thyroid hormone generation
FPKM:1.98 TPM:1.03
1167 A_BomoMSG_c11284_g1_i1
745bp
 protein_ECT2_isoform_X3_[Bombyx_mori]
FPKM:2.01 TPM:1.05
1168 A_BomoMSG_c11285_g1_i1
290bp
 uncharacterized_protein_LOC101737353_[Bombyx_mori]
FPKM:1.28 TPM:0.67
1169 A_BomoMSG_c11286_g1_i1
1697bp
FPKM:136.11 TPM:70.81
1170 A_BomoMSG_c11288_g1_i1
2110bp
 glycosyl-phosphatidyl-inositol-anchored_protein_[Bombyx_mori]
GO:0000932 C P-body
GO:0003723 F RNA binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0010494 C cytoplasmic stress granule
GO:0017148 P negative regulation of translation
GO:0030154 P cell differentiation
GO:0030425 C dendrite
GO:0042995 C cell projection
GO:0050775 P positive regulation of dendrite morphogenesis
GO:0061003 P positive regulation of dendritic spine morphogenesis
FPKM:28.47 TPM:14.81
previous next from show/47701

- SilkBase 1999-2023 -