SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMSG_c11267_g1_i1
Scaffold_idBomo_Chr14
NCBI non-redundant
(nr)		E3_ubiquitin-protein_ligase_TRIM33_[Bombyx_mori]
Ontology
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0003677 F DNA binding
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0017015 P regulation of transforming growth factor beta receptor signaling pathway
GO:0030514 P negative regulation of BMP signaling pathway
GO:0043231 C intracellular membrane-bounded organelle
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0070410 F co-SMAD binding
GO:0070412 F R-SMAD binding
Transcript
Level		FPKM:3.18 TPM:1.65
ORF EntryO_BomoMSG2529_5prime_partial:A_BomoMSG_c11267_g1_i1
Sequence
(Nucleotide)
GGCACATCCCACAACACAATTCACACAACGGTGAGTGCGGACCGGAGCTGGCGGCGGGAG
GCGGCGCGCCCCCCAGCGGCGGCTCGGAGTACAAGATCACGCTGTCCCGGCCGCGCCCGC
AGCCCGCCGTCGTCACCTCCACCAACCCCAAGACGCCCAGCCCCAGCCTCAACGGCGGCG
CCAGCGAGCTGGACGCCGTGTGCGCCGAGTCCGTGCAGGACCTCATGGCCACCATCGCCA
AGCTGGACTCCAACGGCGTGCAGGTGCTGCCCGAGCACTCCCCCGCGCCGCTCGTGCACT
CCTCCACCGACCCCGACCCCGCCCCAGGTAAGAGCTTGGCCACGAATGCGGCGGGCGCAG
CGGGCACGAGCGGCAGCGGAGGCGGAGGCGGGAGCGGGGATCCCAACGAGGACTGGTGCG
CCGTGTGCATGGACGGGGGCGAGCTGATGTGCTGCGACAAGTGCCCTAAAGTGTTCCACC
AGTACTGCCACATACCCACCATAGAAAAACTACCCGACGAGACTGAGAGCTGGCAGTGCC
TTCTGTGCGTGAACTTCGCGGAGGTGGGGGAGGACGCGGCGCCCGGGGGCTCCGGCGCGG
GCCCGGGGCTGGGCCCCCGCATGCAGCGCCTCGTGGAGCGGATCACGCTGGAGTTGTACT
GCCAGTACGAACTCAGCCTGCACTTCAGGGAGCCCGTGCCGGCCGAGAACCTGCACTACC
ACTCCAAGATCGCTCGGCCCATGTGCCTGGACGCCATCCGCATGAAGCTGCAGCCGGGGT
CGGCGTCCCGCTACGCACACGTGGAGCGCTTCCTGGCCGACGTGCGCCTGCTCTTCCGCA
ACGCCTACGCCTACAACCCGCCGGACTCGCAGGTGTACAAGGACG
(885 bp)

- SilkBase 1999-2023 -